Wall clock time and date at job start Tue Mar 31 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00493 * 2 1 4 4 H 1.48497 * 109.47006 * 269.99968 * 3 2 1 5 5 H 1.48499 * 109.46919 * 29.99988 * 3 2 1 6 6 H 1.48503 * 109.47280 * 149.99727 * 3 2 1 7 7 C 1.37877 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00197 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00236 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47291 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47294 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00399 * 180.02562 * 11 10 9 13 13 O 1.21595 * 119.99617 * 354.91130 * 12 11 10 14 14 N 1.34769 * 120.00149 * 174.91759 * 12 11 10 15 15 C 1.46898 * 120.58034 * 4.73891 * 14 12 11 16 16 C 1.52766 * 109.14419 * 233.20300 * 15 14 12 17 17 C 1.53011 * 109.26947 * 305.78752 * 16 15 14 18 18 H 1.09007 * 109.45016 * 301.63691 * 17 16 15 19 19 O 1.42817 * 109.78470 * 181.54156 * 17 16 15 20 20 C 1.42945 * 114.00273 * 178.70744 * 19 17 16 21 21 C 1.53068 * 109.50926 * 61.04085 * 20 19 17 22 22 C 1.53270 * 109.53232 * 302.77955 * 21 20 19 23 23 C 1.53102 * 108.92398 * 56.33395 * 22 21 20 24 24 H 1.08999 * 109.56958 * 63.56255 * 23 22 21 25 25 C 1.46976 * 120.58088 * 185.01308 * 14 12 11 26 26 H 0.97001 * 119.99616 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47193 * 299.99971 * 9 7 2 28 28 H 1.08999 * 109.47233 * 59.99908 * 9 7 2 29 29 H 1.09003 * 109.47248 * 299.99714 * 10 9 7 30 30 H 1.08999 * 109.47244 * 59.99685 * 10 9 7 31 31 H 0.97006 * 119.99591 * 359.97438 * 11 10 9 32 32 H 1.08999 * 109.57002 * 353.07834 * 15 14 12 33 33 H 1.09005 * 109.57242 * 113.43768 * 15 14 12 34 34 H 1.09004 * 109.59601 * 185.77419 * 16 15 14 35 35 H 1.09006 * 109.41260 * 65.68271 * 16 15 14 36 36 H 1.08995 * 109.46541 * 181.05371 * 20 19 17 37 37 H 1.08998 * 109.46722 * 301.03233 * 20 19 17 38 38 H 1.09003 * 109.50913 * 62.50690 * 21 20 19 39 39 H 1.08998 * 109.51417 * 182.60412 * 21 20 19 40 40 H 1.08998 * 109.27350 * 296.67583 * 22 21 20 41 41 H 1.09009 * 109.86887 * 176.34641 * 22 21 20 42 42 H 1.08994 * 109.61327 * 246.20522 * 25 14 12 43 43 H 1.08999 * 109.61263 * 6.72303 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0018 11 7 1.5125 -4.9309 0.0012 12 6 2.1862 -6.0981 0.0027 13 8 3.3987 -6.1003 -0.0889 14 7 1.5161 -7.2629 0.1055 15 6 0.0473 -7.2819 0.1124 16 6 -0.4380 -8.0503 1.3403 17 6 0.2124 -9.4352 1.3590 18 1 -0.0404 -9.9674 0.4419 19 8 -0.2614 -10.1767 2.4839 20 6 0.2691 -11.5010 2.5726 21 6 1.7919 -11.4334 2.7125 22 6 2.3820 -10.6656 1.5244 23 6 1.7330 -9.2806 1.4564 24 1 1.9858 -8.7146 2.3530 25 6 2.2422 -8.5358 0.2187 26 1 -0.4849 0.8401 -0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 2.8724 -3.6049 -0.8877 30 1 2.8710 -3.6040 0.8922 31 1 0.5424 -4.9308 0.0005 32 1 -0.3309 -6.2603 0.1499 33 1 -0.3158 -7.7746 -0.7897 34 1 -1.5220 -8.1576 1.2996 35 1 -0.1597 -7.5051 2.2422 36 1 -0.1535 -12.0041 3.4423 37 1 0.0116 -12.0567 1.6710 38 1 2.0499 -10.9167 3.6369 39 1 2.2008 -12.4435 2.7337 40 1 2.1741 -11.2116 0.6042 41 1 3.4593 -10.5580 1.6511 42 1 2.0633 -9.1394 -0.6710 43 1 3.3094 -8.3402 0.3227 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254565000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:25 Heat of formation + Delta-G solvation = -89.071646 kcal Electronic energy + Delta-G solvation = -22644.963440 eV Core-core repulsion = 19303.433794 eV Total energy + Delta-G solvation = -3341.529646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68517 -39.27442 -36.49870 -34.92315 -34.20243 -32.88253 -32.04274 -30.71794 -29.39230 -26.16116 -25.05217 -24.38211 -23.00892 -21.81782 -20.98212 -20.48868 -19.40904 -17.95489 -16.71195 -16.33389 -16.06664 -15.74251 -15.57162 -15.14776 -14.60318 -14.47112 -14.08729 -14.06576 -13.63758 -13.51442 -13.15569 -12.86577 -12.60821 -12.36080 -12.26970 -11.78034 -11.73636 -11.28344 -11.20150 -11.12078 -11.01797 -10.88060 -10.61688 -10.50270 -10.30789 -9.88917 -9.62516 -9.52431 -9.24871 -8.75646 -8.45207 -8.19043 -6.07996 -4.10469 2.85493 3.30780 3.36826 3.37933 3.41394 3.61228 4.17738 4.38767 4.44039 4.45409 4.47911 4.60662 4.82475 4.85226 4.93169 5.11245 5.14154 5.19459 5.29213 5.30211 5.37037 5.44045 5.47848 5.60957 5.66335 5.73908 5.77049 5.85921 5.92430 6.12312 6.28025 6.41462 6.57316 6.78726 6.96886 7.00827 7.16164 7.56875 7.64514 7.91175 8.25609 8.37593 8.93053 8.98542 9.54214 11.03737 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036880 B = 0.003027 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.041675 B = 9249.331435 C = 9637.044384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.738 5.738 12 C 0.703 3.297 13 O -0.596 6.596 14 N -0.637 5.637 15 C 0.115 3.885 16 C -0.128 4.128 17 C 0.098 3.902 18 H 0.059 0.941 19 O -0.379 6.379 20 C 0.062 3.938 21 C -0.156 4.156 22 C -0.115 4.115 23 C -0.133 4.133 24 H 0.084 0.916 25 C 0.139 3.861 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.392 0.608 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 -24.205 2.791 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.394 5.394 12 C 0.405 3.595 13 O -0.474 6.474 14 N -0.375 5.375 15 C -0.009 4.009 16 C -0.166 4.166 17 C 0.041 3.959 18 H 0.077 0.923 19 O -0.298 6.298 20 C -0.015 4.015 21 C -0.193 4.193 22 C -0.153 4.153 23 C -0.153 4.153 24 H 0.103 0.897 25 C 0.015 3.985 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.228 0.772 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.435 -23.940 2.861 24.153 hybrid contribution 0.049 0.759 -0.122 0.770 sum -1.386 -23.181 2.739 23.383 Atomic orbital electron populations 1.69956 1.06085 1.26841 1.50474 1.24994 0.94896 0.99397 0.95018 0.86509 0.79847 0.82995 0.78187 1.20569 1.21187 1.19721 1.21052 0.93273 0.90348 1.51220 0.92220 1.19321 0.94251 0.91090 0.97768 1.21606 0.95676 0.80447 1.00653 1.45719 1.09910 1.05328 1.78448 1.15957 0.85312 0.80384 0.77860 1.90875 1.12037 1.86178 1.58342 1.47295 1.05783 1.05646 1.78805 1.21478 0.80367 1.01442 0.97578 1.21837 1.01106 0.94080 0.99605 1.22038 0.92467 0.92571 0.88869 0.92341 1.87929 1.68367 1.25951 1.47530 1.22542 0.93099 0.84201 1.01638 1.22186 0.96547 1.01073 0.99541 1.21578 1.00562 0.94722 0.98458 1.22208 0.96014 0.96802 1.00276 0.89738 1.21375 0.98224 0.82891 0.95962 0.92869 0.95998 0.95991 0.92695 0.92855 0.77190 0.89322 0.91242 0.89698 0.90362 0.88953 0.93313 0.91010 0.90812 0.91642 0.90880 0.91962 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.04 5.62 -4.04 -0.02 3.02 16 11 N -0.74 -13.53 5.47 -65.22 -0.36 -13.88 16 12 C 0.70 12.81 8.29 -86.93 -0.72 12.09 16 13 O -0.60 -13.07 15.78 5.28 0.08 -12.98 16 14 N -0.64 -8.72 2.98 -178.76 -0.53 -9.26 16 15 C 0.12 1.21 6.40 -3.95 -0.03 1.19 16 16 C -0.13 -1.26 5.73 -26.85 -0.15 -1.41 16 17 C 0.10 0.95 2.47 -26.65 -0.07 0.89 16 18 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 19 O -0.38 -3.98 10.43 -35.23 -0.37 -4.34 16 20 C 0.06 0.47 6.85 37.19 0.25 0.73 16 21 C -0.16 -1.11 6.12 -26.56 -0.16 -1.27 16 22 C -0.12 -0.91 5.35 -26.54 -0.14 -1.05 16 23 C -0.13 -1.34 2.32 -90.40 -0.21 -1.55 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 25 C 0.14 1.63 5.71 -3.70 -0.02 1.61 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.39 6.25 5.93 -40.82 -0.24 6.00 16 32 H 0.09 0.93 5.56 -51.93 -0.29 0.64 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.10 1.31 7.03 -51.93 -0.37 0.94 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -32.63 338.17 -9.39 -42.01 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.20 Total: 1.23 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.82 Total: 1.12 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.15 Total: -48.61 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.28 Total: -17.32 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.63 -9.39 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254565000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.057 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds