Wall clock time and date at job start Tue Mar 31 2020 05:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46959 * 2 1 4 4 H 1.09004 * 109.47376 * 310.31456 * 3 2 1 5 5 C 1.50700 * 109.47235 * 190.30904 * 3 2 1 6 6 H 1.07997 * 120.00636 * 245.34116 * 5 3 2 7 7 C 1.37877 * 119.99631 * 65.33882 * 5 3 2 8 8 N 1.31513 * 120.00334 * 202.82075 * 7 5 3 9 9 Si 1.86810 * 119.99972 * 22.82121 * 7 5 3 10 10 H 1.48500 * 109.47039 * 85.54928 * 9 7 5 11 11 H 1.48498 * 109.47113 * 205.54812 * 9 7 5 12 12 H 1.48499 * 109.46678 * 325.54654 * 9 7 5 13 13 N 1.46902 * 109.47110 * 70.31377 * 3 2 1 14 14 C 1.46899 * 111.00004 * 42.69671 * 13 3 2 15 15 C 1.46898 * 111.00041 * 278.74175 * 13 3 2 16 16 C 1.50708 * 109.47039 * 204.37341 * 15 13 3 17 17 C 1.33640 * 122.74718 * 95.02351 * 16 15 13 18 18 S 1.76198 * 107.91960 * 179.97438 * 17 16 15 19 19 C 1.70970 * 90.28545 * 359.97438 * 18 17 16 20 20 C 1.50706 * 124.92029 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.46918 * 300.03000 * 20 19 18 22 22 C 1.53001 * 109.46746 * 60.02606 * 20 19 18 23 23 N 1.29032 * 110.16720 * 359.97438 * 19 18 17 24 24 H 1.09001 * 109.47196 * 42.56699 * 1 2 3 25 25 H 1.08997 * 109.47027 * 162.56806 * 1 2 3 26 26 H 1.08999 * 109.47618 * 282.56881 * 1 2 3 27 27 H 1.08996 * 109.47387 * 239.99997 * 2 1 3 28 28 H 1.08998 * 109.47084 * 119.99824 * 2 1 3 29 29 H 0.97002 * 120.00272 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.47188 * 296.04290 * 14 13 3 31 31 H 1.08995 * 109.47373 * 56.04652 * 14 13 3 32 32 H 1.09006 * 109.47228 * 176.04807 * 14 13 3 33 33 H 1.08996 * 109.47244 * 84.37160 * 15 13 3 34 34 H 1.09000 * 109.47340 * 324.36929 * 15 13 3 35 35 H 1.07991 * 126.04288 * 359.97381 * 17 16 15 36 36 H 1.08998 * 109.47591 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.47344 * 299.99293 * 21 20 19 38 38 H 1.08998 * 109.47279 * 59.99454 * 21 20 19 39 39 H 1.09001 * 109.47325 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.47314 * 60.00038 * 22 20 19 41 41 H 1.08999 * 109.47295 * 180.02562 * 22 20 19 42 42 H 1.09007 * 109.47228 * 300.00045 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5342 2.0067 -0.7836 5 6 3.5253 1.4502 -0.2543 6 1 4.2030 1.7918 0.5141 7 6 4.0191 1.0211 -1.4680 8 7 5.2614 0.5996 -1.5605 9 14 2.9236 1.0386 -2.9810 10 1 2.9711 2.3825 -3.6110 11 1 3.4019 0.0203 -3.9502 12 1 1.5269 0.7268 -2.5843 13 7 1.7633 2.0597 1.3041 14 6 2.0662 1.1308 2.4010 15 6 0.3733 2.5288 1.3802 16 6 0.2713 3.6344 2.3992 17 6 0.3373 4.9282 2.0711 18 16 0.1752 5.8716 3.5504 19 6 0.0342 4.4326 4.4628 20 6 -0.1496 4.3732 5.9574 21 6 1.0388 5.0488 6.6445 22 6 -1.4407 5.0987 6.3416 23 7 0.1078 3.4046 3.6864 24 1 -0.3633 0.7569 -0.6952 25 1 -0.3633 -0.9804 -0.3079 26 1 -0.3634 0.2236 1.0030 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.6090 0.2980 -2.4145 30 1 1.4024 0.2683 2.3405 31 1 3.1014 0.7990 2.3207 32 1 1.9196 1.6358 3.3558 33 1 -0.2735 1.7024 1.6748 34 1 0.0624 2.9037 0.4050 35 1 0.4670 5.3254 1.0753 36 1 -0.2093 3.3323 6.2752 37 1 1.9587 4.5320 6.3709 38 1 1.0986 6.0897 6.3268 39 1 0.9058 5.0063 7.7256 40 1 -2.2873 4.6175 5.8521 41 1 -1.5735 5.0562 7.4227 42 1 -1.3809 6.1397 6.0239 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:17 Heat of formation + Delta-G solvation = 46.555367 kcal Electronic energy + Delta-G solvation = -20553.896581 eV Core-core repulsion = 17661.001035 eV Total energy + Delta-G solvation = -2892.895546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.84818 -37.67387 -35.66155 -32.68769 -31.42996 -30.04559 -27.88883 -27.41227 -26.69386 -25.11750 -23.46057 -22.21274 -20.70160 -19.50089 -19.14996 -17.36143 -16.65494 -15.73297 -15.55261 -14.71490 -14.48694 -14.21893 -14.12799 -13.81998 -13.37426 -12.96895 -12.88348 -12.62472 -12.39932 -12.15258 -12.01974 -11.80031 -11.61101 -11.42289 -11.37672 -11.14074 -11.04688 -10.91470 -10.71826 -10.62242 -10.19175 -9.77246 -9.62005 -9.44050 -9.30572 -9.17949 -8.50449 -8.25295 -7.23153 -6.10018 -3.96683 0.93498 1.55092 1.93374 3.03263 3.29968 3.38860 3.41411 4.04051 4.44984 4.68479 4.87464 4.92599 5.11440 5.16977 5.35788 5.39286 5.40913 5.52615 5.55880 5.62521 5.75863 5.82518 5.87460 5.95001 5.98225 6.01649 6.05889 6.13993 6.29066 6.35593 6.42478 6.59366 6.61865 6.80956 6.87988 7.00334 7.28456 7.69395 7.96898 8.01747 8.15525 8.69509 9.08598 9.59704 11.03094 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027200 B = 0.004235 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.183509 B = 6609.260791 C = 6681.654214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.157 4.157 3 C 0.194 3.806 4 H 0.031 0.969 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.079 3.921 8 N -0.885 5.885 9 Si 0.855 3.145 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.260 1.260 13 N -0.517 5.517 14 C 0.035 3.965 15 C 0.117 3.883 16 C 0.090 3.910 17 C -0.241 4.241 18 S 0.090 5.910 19 C 0.051 3.949 20 C -0.019 4.019 21 C -0.147 4.147 22 C -0.145 4.145 23 N -0.462 5.462 24 H 0.046 0.954 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.263 0.737 30 H 0.021 0.979 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.175 0.825 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.452 8.698 12.941 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.196 4.196 3 C 0.086 3.914 4 H 0.048 0.952 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.522 5.522 9 Si 0.681 3.319 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.184 1.184 13 N -0.239 5.239 14 C -0.113 4.113 15 C -0.014 4.014 16 C -0.042 4.042 17 C -0.380 4.380 18 S 0.344 5.656 19 C -0.227 4.227 20 C -0.041 4.041 21 C -0.205 4.205 22 C -0.204 4.204 23 N -0.176 5.176 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.193 0.807 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.028 9.562 13.309 20.936 hybrid contribution -0.818 -1.377 -1.852 2.448 sum -13.847 8.185 11.457 19.748 Atomic orbital electron populations 1.22146 0.98590 1.00367 1.00566 1.22607 0.92786 1.02041 1.02166 1.19782 0.97368 0.88404 0.85807 0.95163 1.20809 0.89507 1.43342 1.00881 0.90365 1.24821 0.94761 0.94057 0.98699 1.70048 1.16343 1.40468 1.25336 0.87261 0.82519 0.78031 0.84042 1.20406 1.21562 1.18396 1.62090 1.17600 1.39722 1.04532 1.22325 1.01414 0.93969 0.93594 1.20903 0.92538 0.93406 0.94555 1.20389 0.99298 0.94134 0.90343 1.26795 1.12725 0.96039 1.02483 1.83643 1.68604 1.13478 0.99878 1.26968 1.04030 0.91080 1.00666 1.19771 0.96339 1.02491 0.85468 1.21917 0.97509 1.00636 1.00445 1.21911 0.96288 1.00313 1.01857 1.66101 1.15244 1.32589 1.03659 0.93488 0.94105 0.93144 0.92307 0.91770 0.92735 0.96082 0.90950 0.92869 0.92772 0.90221 0.80740 0.88319 0.91808 0.92266 0.91422 0.92130 0.91414 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 8.63 37.16 0.32 -2.54 16 2 C -0.16 -3.38 4.31 -26.73 -0.12 -3.50 16 3 C 0.19 4.53 1.45 -68.86 -0.10 4.43 16 4 H 0.03 0.72 5.77 -51.93 -0.30 0.42 16 5 C -0.51 -14.16 8.55 -34.44 -0.29 -14.46 16 6 H 0.08 2.42 7.93 -52.49 -0.42 2.01 16 7 C 0.08 2.25 5.16 -17.82 -0.09 2.16 16 8 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 9 Si 0.86 20.97 26.02 -169.99 -4.42 16.54 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.01 6.10 56.52 0.34 -5.67 16 13 N -0.52 -10.94 4.51 -237.72 -1.07 -12.01 16 14 C 0.04 0.71 8.19 60.06 0.49 1.20 16 15 C 0.12 2.11 4.29 -4.97 -0.02 2.09 16 16 C 0.09 1.52 5.98 -84.22 -0.50 1.01 16 17 C -0.24 -3.63 11.11 29.12 0.32 -3.31 16 18 S 0.09 1.12 22.53 -107.50 -2.42 -1.30 16 19 C 0.05 0.69 6.03 -13.45 -0.08 0.61 16 20 C -0.02 -0.19 3.35 -91.77 -0.31 -0.50 16 21 C -0.15 -1.29 9.09 37.16 0.34 -0.95 16 22 C -0.15 -1.16 9.09 37.16 0.34 -0.82 16 23 N -0.46 -7.56 9.80 -8.05 -0.08 -7.64 16 24 H 0.05 0.83 7.86 -51.93 -0.41 0.42 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.85 5.16 -51.93 -0.27 0.58 16 27 H 0.06 1.36 5.81 -51.93 -0.30 1.06 16 28 H 0.06 1.38 5.76 -51.93 -0.30 1.08 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.02 0.40 5.61 -51.93 -0.29 0.11 16 31 H 0.07 1.59 7.52 -51.93 -0.39 1.20 16 32 H 0.05 1.03 7.18 -51.93 -0.37 0.66 16 33 H 0.05 0.96 5.29 -51.93 -0.27 0.68 16 34 H 0.08 1.37 7.44 -51.93 -0.39 0.99 16 35 H 0.18 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.45 7.93 -51.93 -0.41 0.04 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -30.48 334.77 -8.56 -39.05 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.68 Total: 0.84 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 0.30 Total: -14.57 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.38 Total: -45.60 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.42 Total: 16.54 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.42 Total: -1.30 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.48 -8.56 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.604 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds