Wall clock time and date at job start Tue Mar 31 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99698 * 2 1 4 4 H 1.48501 * 109.47314 * 240.00278 * 3 2 1 5 5 H 1.48498 * 109.46950 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46749 * 120.00390 * 3 2 1 7 7 C 1.38951 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99525 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99999 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00000 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00202 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00267 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47455 * 179.97438 * 12 10 9 14 14 C 1.46899 * 111.00230 * 179.97438 * 13 12 10 15 15 H 1.08992 * 109.61208 * 34.77816 * 14 13 12 16 16 C 1.53250 * 109.54156 * 274.55623 * 14 13 12 17 17 C 1.53088 * 109.11467 * 183.76262 * 16 14 13 18 18 O 1.42908 * 109.50939 * 57.94128 * 17 16 14 19 19 C 1.42975 * 114.05950 * 298.53529 * 18 17 16 20 20 C 1.52715 * 109.42590 * 60.47644 * 19 18 17 21 21 C 1.53942 * 109.87657 * 182.27167 * 20 19 18 22 22 C 1.54964 * 104.12081 * 263.97571 * 21 20 19 23 23 C 1.54917 * 102.79449 * 322.34828 * 22 21 20 24 24 C 1.53559 * 110.03990 * 64.78849 * 20 19 18 25 25 H 0.96995 * 120.00350 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00083 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.46907 * 59.99648 * 12 10 9 28 28 H 1.09000 * 109.46905 * 300.00091 * 12 10 9 29 29 H 1.00906 * 110.99739 * 303.95450 * 13 12 10 30 30 H 1.09001 * 109.53045 * 63.86916 * 16 14 13 31 31 H 1.09001 * 109.59232 * 303.68890 * 16 14 13 32 32 H 1.09005 * 109.46365 * 297.93425 * 17 16 14 33 33 H 1.08996 * 109.45934 * 177.95290 * 17 16 14 34 34 H 1.09005 * 109.47809 * 300.49871 * 19 18 17 35 35 H 1.08992 * 109.48404 * 180.46967 * 19 18 17 36 36 H 1.09000 * 110.49719 * 145.31888 * 21 20 19 37 37 H 1.09000 * 110.49884 * 22.63500 * 21 20 19 38 38 H 1.09003 * 110.74767 * 204.01740 * 22 21 20 39 39 H 1.09009 * 110.74716 * 80.67185 * 22 21 20 40 40 H 1.08999 * 110.48299 * 156.44379 * 23 22 21 41 41 H 1.08996 * 110.48443 * 279.08120 * 23 22 21 42 42 H 1.09005 * 110.05612 * 0.15914 * 24 20 19 43 43 H 1.08995 * 110.10383 * 238.69235 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8630 -0.0011 13 7 2.1985 -5.9795 -0.0016 14 6 1.4983 -7.2708 -0.0016 15 1 0.5824 -7.1904 -0.5869 16 6 1.1536 -7.6670 1.4381 17 6 0.5092 -9.0556 1.4353 18 8 1.4044 -9.9960 0.8382 19 6 1.7266 -9.7094 -0.5250 20 6 2.4017 -8.3422 -0.6106 21 6 2.7021 -7.9979 -2.0807 22 6 4.1775 -8.4294 -2.2761 23 6 4.8299 -8.0428 -0.9253 24 6 3.7489 -8.3735 0.1256 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3906 -0.0005 27 1 0.6176 -4.9205 -0.8914 28 1 0.6169 -4.9209 0.8886 29 1 2.8334 -5.9120 -0.7830 30 1 0.4561 -6.9424 1.8584 31 1 2.0628 -7.6884 2.0390 32 1 -0.4187 -9.0243 0.8642 33 1 0.2948 -9.3585 2.4602 34 1 0.8137 -9.7018 -1.1205 35 1 2.4035 -10.4735 -0.9069 36 1 2.5916 -6.9272 -2.2522 37 1 2.0481 -8.5617 -2.7460 38 1 4.6353 -7.8786 -3.0978 39 1 4.2464 -9.5042 -2.4446 40 1 5.7264 -8.6375 -0.7506 41 1 5.0671 -6.9791 -0.9069 42 1 3.9241 -9.3653 0.5426 43 1 3.7592 -7.6273 0.9200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308163741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:55 Heat of formation + Delta-G solvation = -94.688683 kcal Electronic energy + Delta-G solvation = -23253.182514 eV Core-core repulsion = 19911.409295 eV Total energy + Delta-G solvation = -3341.773219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65833 -38.16956 -37.03373 -35.17801 -33.85204 -31.42828 -31.08680 -30.51327 -28.71112 -26.86214 -25.00110 -24.46314 -22.96964 -21.72338 -20.54369 -19.31367 -18.43560 -17.88596 -16.81883 -16.30281 -15.68545 -15.54320 -15.38257 -14.82243 -14.51865 -14.29621 -14.01393 -13.71075 -13.47918 -13.20407 -13.10394 -12.72303 -12.23679 -11.99822 -11.74051 -11.53479 -11.40460 -11.28215 -11.10599 -11.04932 -10.93888 -10.84621 -10.44253 -10.41919 -10.35735 -10.21860 -10.11926 -9.51920 -9.49511 -8.42303 -8.03119 -7.94931 -6.41306 -3.82131 3.20295 3.25855 3.30341 3.76342 3.91721 4.08012 4.28202 4.48644 4.54371 4.62467 4.92382 4.99349 5.11261 5.15038 5.20237 5.25190 5.27534 5.40905 5.44654 5.53318 5.55757 5.61934 5.65819 5.75778 5.80118 5.81636 5.93164 5.97851 5.99166 6.07511 6.15597 6.20124 6.25815 6.33430 6.47748 6.55905 7.09789 7.28716 7.55261 7.72241 8.06716 8.61915 9.18265 9.54874 10.06515 10.76439 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.003825 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.110806 B = 7317.595504 C = 7940.287953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.660 5.660 14 C 0.098 3.902 15 H 0.040 0.960 16 C -0.146 4.146 17 C 0.061 3.939 18 O -0.381 6.381 19 C 0.078 3.922 20 C -0.097 4.097 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.106 4.106 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.352 0.648 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.026 -18.508 -2.047 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.466 6.466 12 C -0.083 4.083 13 N -0.294 5.294 14 C -0.013 4.013 15 H 0.058 0.942 16 C -0.184 4.184 17 C -0.016 4.016 18 O -0.299 6.299 19 C 0.001 3.999 20 C -0.098 4.098 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.164 4.164 24 C -0.144 4.144 25 H 0.082 0.918 26 H 0.225 0.775 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.174 0.826 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.875 -18.464 -1.274 18.528 hybrid contribution -0.819 1.218 -1.065 1.814 sum 0.056 -17.246 -2.339 17.404 Atomic orbital electron populations 1.69602 1.05939 1.28246 1.50620 1.25254 0.95620 0.99695 0.97322 0.85921 0.78765 0.80479 0.79077 1.19927 1.20979 1.19879 1.19652 0.93336 0.82262 1.47663 0.87996 1.41858 1.09171 1.04605 1.64445 1.19810 0.88394 0.84695 0.84431 1.90520 1.13730 1.87065 1.55331 1.21728 0.94464 0.91135 1.00973 1.60134 1.18471 0.99220 1.51585 1.21439 0.94822 0.89408 0.95584 0.94166 1.22272 1.02399 0.96304 0.97419 1.22597 0.91618 0.88902 0.98458 1.87926 1.66136 1.49871 1.26001 1.22589 0.98441 0.95640 0.83218 1.21744 0.97020 0.95310 0.95679 1.22442 0.97076 1.01539 0.94779 1.22493 0.95060 1.00519 0.97957 1.22418 0.97765 1.01928 0.94278 1.22104 0.91691 1.02112 0.98445 0.91837 0.77501 0.94131 0.89739 0.82593 0.90953 0.89902 0.93568 0.88894 0.93542 0.88859 0.91179 0.91638 0.91638 0.91819 0.92109 0.90895 0.91929 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 9 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 10 C 0.44 10.47 7.82 -10.98 -0.09 10.39 16 11 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 12 C 0.05 0.89 5.97 -4.98 -0.03 0.86 16 13 N -0.66 -10.68 5.00 -107.97 -0.54 -11.22 16 14 C 0.10 1.25 1.62 -67.69 -0.11 1.14 16 15 H 0.04 0.51 7.80 -51.93 -0.41 0.11 16 16 C -0.15 -1.76 5.38 -26.56 -0.14 -1.90 16 17 C 0.06 0.64 6.83 37.20 0.25 0.89 16 18 O -0.38 -4.46 10.44 -35.23 -0.37 -4.83 16 19 C 0.08 0.80 5.16 37.01 0.19 0.99 16 20 C -0.10 -1.09 0.41 -153.98 -0.06 -1.15 16 21 C -0.12 -1.29 5.55 -25.20 -0.14 -1.43 16 22 C -0.12 -1.24 6.91 -24.68 -0.17 -1.41 16 23 C -0.13 -1.45 6.84 -25.02 -0.17 -1.62 16 24 C -0.11 -1.28 5.03 -25.74 -0.13 -1.41 16 25 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 27 H 0.04 0.66 8.06 -51.93 -0.42 0.25 16 28 H 0.08 1.40 7.55 -51.93 -0.39 1.01 16 29 H 0.35 5.98 6.05 -39.29 -0.24 5.74 16 30 H 0.07 0.87 7.59 -51.93 -0.39 0.48 16 31 H 0.08 1.11 6.89 -51.93 -0.36 0.75 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.86 6.29 -51.93 -0.33 0.54 16 37 H 0.06 0.61 7.81 -51.93 -0.41 0.20 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.74 7.56 -51.93 -0.39 0.34 16 43 H 0.08 1.22 6.18 -51.93 -0.32 0.90 16 LS Contribution 333.40 15.07 5.02 5.02 Total: -1.00 -30.44 333.40 -7.86 -38.29 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -6.86 Total: 13.43 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.84 Total: -2.69 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.13 Total: -49.59 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.28 Total: -20.59 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.44 -7.86 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308163741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.397 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds