Wall clock time and date at job start Tue Mar 31 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99713 * 2 1 4 4 H 1.48501 * 109.46832 * 240.00103 * 3 2 1 5 5 H 1.48497 * 109.46950 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46824 * 120.00404 * 3 2 1 7 7 C 1.38815 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99958 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99872 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99953 * 180.02562 * 9 7 2 11 11 H 1.09006 * 112.90434 * 23.75252 * 10 9 7 12 12 C 1.53780 * 113.61625 * 155.00092 * 10 9 7 13 13 C 1.53776 * 87.08464 * 139.98340 * 12 10 9 14 14 H 1.09004 * 113.61411 * 89.20036 * 13 12 10 15 15 C 1.52998 * 113.61852 * 220.02006 * 13 12 10 16 16 N 1.46493 * 109.47412 * 184.99836 * 15 13 12 17 17 C 1.34779 * 120.00103 * 179.97438 * 16 15 13 18 18 O 1.21287 * 119.99972 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00141 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47090 * 180.02562 * 19 17 16 21 21 H 1.09003 * 111.01967 * 302.23403 * 20 19 17 22 22 C 1.55566 * 111.22545 * 177.93149 * 20 19 17 23 23 C 1.54383 * 102.27674 * 207.98163 * 22 20 19 24 24 O 1.43235 * 107.58532 * 21.35887 * 23 22 20 25 25 C 1.43645 * 109.97529 * 1.70714 * 24 23 22 26 26 C 1.53784 * 113.61762 * 252.50092 * 10 9 7 27 27 H 0.96991 * 120.00136 * 359.97438 * 1 2 3 28 28 H 0.97006 * 120.00114 * 0.02562 * 9 7 2 29 29 H 1.09003 * 113.61571 * 25.43460 * 12 10 9 30 30 H 1.09000 * 113.69210 * 254.54089 * 12 10 9 31 31 H 1.09004 * 109.46922 * 64.99283 * 15 13 12 32 32 H 1.09002 * 109.46999 * 305.00229 * 15 13 12 33 33 H 0.96999 * 119.99877 * 359.97438 * 16 15 13 34 34 H 1.09001 * 109.46652 * 60.00683 * 19 17 16 35 35 H 1.09000 * 109.47190 * 300.00368 * 19 17 16 36 36 H 1.09007 * 110.84061 * 89.78331 * 22 20 19 37 37 H 1.09002 * 111.01266 * 326.26329 * 22 20 19 38 38 H 1.08995 * 109.83335 * 261.84022 * 23 22 20 39 39 H 1.08997 * 109.90193 * 140.90890 * 23 22 20 40 40 H 1.09002 * 110.30923 * 94.49115 * 25 24 23 41 41 H 1.09000 * 110.31166 * 216.56243 * 25 24 23 42 42 H 1.08990 * 113.61473 * 105.47022 * 26 10 9 43 43 H 1.09001 * 113.61047 * 334.56599 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0662 -3.5646 0.4039 12 6 1.2603 -4.8288 0.5949 13 6 1.8481 -5.6976 -0.5295 14 1 2.7980 -6.1646 -0.2692 15 6 0.8452 -6.6852 -1.1290 16 7 1.5264 -7.5432 -2.1016 17 6 0.8363 -8.4957 -2.7598 18 8 -0.3487 -8.6422 -2.5471 19 6 1.5370 -9.3779 -3.7607 20 6 0.5339 -10.3656 -4.3601 21 1 0.0663 -10.9686 -3.5818 22 6 1.2042 -11.2639 -5.4389 23 6 0.0176 -11.6039 -6.3662 24 8 -0.9895 -10.6057 -6.1641 25 6 -0.5309 -9.6315 -5.2133 26 6 1.9993 -4.4021 -1.3444 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 0.1799 -4.7003 0.5279 30 1 1.5907 -5.1221 1.5914 31 1 0.0464 -6.1350 -1.6265 32 1 0.4223 -7.3007 -0.3349 33 1 2.4740 -7.4258 -2.2719 34 1 2.3361 -9.9278 -3.2636 35 1 1.9590 -8.7622 -4.5550 36 1 1.6166 -12.1674 -4.9896 37 1 1.9750 -10.7155 -5.9804 38 1 -0.3797 -12.5868 -6.1131 39 1 0.3446 -11.5940 -7.4060 40 1 -0.0829 -8.7818 -5.7284 41 1 -1.3565 -9.2992 -4.5840 42 1 2.9273 -4.3501 -1.9135 43 1 1.1210 -4.1569 -1.9415 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316613644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:59 Heat of formation + Delta-G solvation = -65.359417 kcal Electronic energy + Delta-G solvation = -21608.959353 eV Core-core repulsion = 18268.457946 eV Total energy + Delta-G solvation = -3340.501407 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.32846 -39.23892 -38.38942 -34.75412 -33.81573 -33.29422 -30.53254 -30.12429 -28.22151 -26.34959 -25.11357 -23.85497 -22.74284 -21.47157 -21.04408 -20.31121 -19.07031 -17.46574 -17.06128 -16.69441 -16.39250 -15.83964 -15.58596 -15.03370 -14.80411 -14.59324 -14.03415 -13.89604 -13.64323 -13.45835 -13.06513 -12.94126 -12.36858 -12.00357 -11.91184 -11.82848 -11.69281 -11.41951 -11.27306 -11.14527 -11.09269 -10.83961 -10.55453 -10.27654 -10.18325 -9.86830 -9.85036 -9.72875 -9.49986 -9.06613 -8.88180 -6.98306 -5.79671 -3.08797 2.52215 3.04885 3.41872 3.46288 3.47620 3.65900 4.06199 4.36920 4.54715 4.56757 4.61777 4.78896 4.92240 4.93739 4.96378 5.08141 5.19854 5.21164 5.28010 5.37303 5.44289 5.44868 5.48107 5.55573 5.79653 5.81240 5.84827 5.90002 5.91502 6.07021 6.22765 6.28901 6.33407 6.42295 6.56531 6.75868 6.80137 7.08710 7.40750 7.66700 8.12248 8.38837 9.49709 10.07934 10.42043 11.42613 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033162 B = 0.002448 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.137457 B =11434.845547 C =11722.593763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.143 4.143 13 C -0.127 4.127 14 H 0.088 0.912 15 C 0.131 3.869 16 N -0.725 5.725 17 C 0.507 3.493 18 O -0.541 6.541 19 C -0.131 4.131 20 C -0.105 4.105 21 H 0.095 0.905 22 C -0.154 4.154 23 C 0.050 3.950 24 O -0.387 6.387 25 C 0.057 3.943 26 C -0.161 4.161 27 H 0.257 0.743 28 H 0.385 0.615 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.400 0.600 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.038 -23.434 -8.525 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.147 4.147 14 H 0.106 0.894 15 C 0.008 3.992 16 N -0.376 5.376 17 C 0.293 3.707 18 O -0.418 6.418 19 C -0.171 4.171 20 C -0.124 4.124 21 H 0.113 0.887 22 C -0.191 4.191 23 C -0.026 4.026 24 O -0.306 6.306 25 C -0.019 4.019 26 C -0.202 4.202 27 H 0.066 0.934 28 H 0.220 0.780 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.234 0.766 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.075 -23.321 -8.446 25.317 hybrid contribution 0.941 0.976 -0.007 1.356 sum 6.016 -22.344 -8.453 24.636 Atomic orbital electron populations 1.69648 1.05141 1.25908 1.57301 1.24780 0.95530 0.97811 1.02793 0.86261 0.78534 0.83498 0.77840 1.21242 1.21664 1.21231 1.19253 0.91023 0.84258 1.43144 0.91161 1.42408 1.05768 0.99875 1.87002 1.21515 0.95299 0.85060 0.92754 0.90693 1.23451 1.01065 0.97037 0.96689 1.22641 0.98355 0.94423 0.99242 0.89426 1.21444 0.95320 0.91575 0.90854 1.46083 1.13296 1.35356 1.42901 1.20621 0.87571 0.80842 0.81675 1.90712 1.15481 1.70087 1.65515 1.21617 0.99197 0.97668 0.98661 1.22635 0.95621 0.96300 0.97886 0.88694 1.23253 0.98432 1.00603 0.96836 1.23083 0.88084 0.92456 0.99022 1.88421 1.40553 1.38292 1.63335 1.23520 0.98174 0.90827 0.89391 1.23952 1.01322 0.94950 0.99976 0.93363 0.78050 0.90112 0.92018 0.91207 0.91798 0.76599 0.88401 0.88523 0.89886 0.90292 0.91406 0.91563 0.92535 0.88265 0.92811 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.75 9.97 -15.06 -0.15 -6.90 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -17.65 5.40 -52.64 -0.28 -17.94 16 10 C 0.17 3.15 4.48 -67.12 -0.30 2.85 16 11 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 12 C -0.14 -2.22 7.39 -25.92 -0.19 -2.41 16 13 C -0.13 -1.63 3.75 -89.81 -0.34 -1.96 16 14 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 15 C 0.13 1.64 5.51 -4.05 -0.02 1.62 16 16 N -0.73 -7.35 5.56 -60.30 -0.33 -7.68 16 17 C 0.51 5.57 7.63 -10.98 -0.08 5.49 16 18 O -0.54 -8.13 14.60 5.55 0.08 -8.04 16 19 C -0.13 -0.93 5.24 -27.88 -0.15 -1.07 16 20 C -0.11 -0.88 2.68 -88.23 -0.24 -1.11 16 21 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 22 C -0.15 -0.94 6.51 -24.64 -0.16 -1.10 16 23 C 0.05 0.40 7.80 37.88 0.30 0.69 16 24 O -0.39 -4.52 11.36 -35.23 -0.40 -4.92 16 25 C 0.06 0.61 6.54 38.18 0.25 0.86 16 26 C -0.16 -2.58 7.43 -25.91 -0.19 -2.77 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.39 10.20 7.92 -40.82 -0.32 9.87 16 29 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.40 2.99 8.47 -40.82 -0.35 2.64 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.55 8.10 -51.93 -0.42 0.12 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.40 8.04 -51.93 -0.42 -0.02 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.57 8.00 -51.93 -0.42 0.16 16 41 H 0.10 1.26 7.14 -51.93 -0.37 0.89 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.40 7.90 -51.93 -0.41 0.99 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -32.75 350.22 -8.63 -41.38 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.30 Total: 8.44 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.37 Total: -6.30 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.11 Total: -53.02 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.32 Total: -12.96 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.75 -8.63 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316613644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.981 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds