Wall clock time and date at job start Tue Mar 31 2020 05:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48502 * 109.47001 * 239.99808 * 3 2 1 5 5 H 1.48499 * 109.47145 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47177 * 120.00048 * 3 2 1 7 7 C 1.38810 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99935 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.85132 * 25.32863 * 10 9 7 12 12 C 1.53781 * 113.61711 * 156.52601 * 10 9 7 13 13 C 1.53777 * 87.08336 * 140.06028 * 12 10 9 14 14 H 1.09003 * 113.60961 * 89.20081 * 13 12 10 15 15 C 1.53002 * 113.61665 * 220.01809 * 13 12 10 16 16 N 1.46496 * 109.47074 * 185.00090 * 15 13 12 17 17 C 1.34775 * 119.99865 * 179.97438 * 16 15 13 18 18 O 1.21280 * 120.00276 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00150 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47359 * 180.02562 * 19 17 16 21 21 O 1.42900 * 112.84644 * 55.33549 * 20 19 17 22 22 C 1.53782 * 113.61517 * 284.13610 * 20 19 17 23 23 C 1.53954 * 87.02109 * 220.04932 * 22 20 19 24 24 C 1.53780 * 113.61542 * 186.52911 * 20 19 17 25 25 C 1.53775 * 87.07992 * 334.56762 * 13 12 10 26 26 H 0.96998 * 120.00051 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00212 * 359.97438 * 9 7 2 28 28 H 1.08997 * 113.61673 * 254.61577 * 12 10 9 29 29 H 1.09005 * 113.61396 * 25.51405 * 12 10 9 30 30 H 1.09003 * 109.47196 * 305.00417 * 15 13 12 31 31 H 1.09000 * 109.46667 * 65.00012 * 15 13 12 32 32 H 0.96994 * 120.00245 * 0.02562 * 16 15 13 33 33 H 1.09003 * 109.47174 * 300.00353 * 19 17 16 34 34 H 1.09008 * 109.47283 * 60.00027 * 19 17 16 35 35 H 0.96696 * 114.00018 * 309.65955 * 21 20 19 36 36 H 1.09001 * 113.61204 * 334.56936 * 22 20 19 37 37 H 1.09003 * 113.61206 * 105.46779 * 22 20 19 38 38 H 1.09004 * 113.53677 * 270.81437 * 23 22 20 39 39 H 1.08992 * 113.74189 * 139.94428 * 23 22 20 40 40 H 1.09001 * 113.61661 * 254.53190 * 24 20 19 41 41 H 1.09007 * 113.61595 * 25.43228 * 24 20 19 42 42 H 1.08993 * 113.61636 * 270.87622 * 25 13 12 43 43 H 1.09008 * 113.61006 * 139.97865 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0558 -3.5691 0.4321 12 6 1.2466 -4.8363 0.5628 13 6 1.8628 -5.6911 -0.5571 14 1 2.8063 -6.1608 -0.2789 15 6 0.8757 -6.6718 -1.1933 16 7 1.5816 -7.5176 -2.1590 17 6 0.9088 -8.4623 -2.8456 18 8 -0.2810 -8.6119 -2.6643 19 6 1.6349 -9.3327 -3.8386 20 6 0.6478 -10.3134 -4.4749 21 8 -0.4731 -9.6612 -5.0752 22 6 0.2599 -11.4819 -3.5535 23 6 0.3370 -12.3840 -4.7987 24 6 1.3161 -11.3549 -5.3878 25 6 2.0332 -4.3858 -1.3521 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 1.5533 -5.1406 1.5635 29 1 0.1681 -4.7074 0.4705 30 1 0.4337 -7.2971 -0.4175 31 1 0.0893 -6.1158 -1.7038 32 1 2.5332 -7.3982 -2.3038 33 1 2.0769 -8.7078 -4.6146 34 1 2.4214 -9.8884 -3.3278 35 1 -0.9119 -9.0219 -4.4975 36 1 1.0131 -11.7124 -2.8000 37 1 -0.7438 -11.3952 -3.1374 38 1 -0.6039 -12.4537 -5.3446 39 1 0.7889 -13.3573 -4.6081 40 1 1.1639 -11.1659 -6.4504 41 1 2.3587 -11.5507 -5.1368 42 1 1.1699 -4.1338 -1.9679 43 1 2.9752 -4.3265 -1.8974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316616141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:14 Heat of formation + Delta-G solvation = -44.169573 kcal Electronic energy + Delta-G solvation = -21828.793249 eV Core-core repulsion = 18489.210703 eV Total energy + Delta-G solvation = -3339.582546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64799 -39.14701 -38.27070 -34.93911 -34.47258 -33.33699 -31.03986 -30.07560 -27.21025 -25.99624 -25.13716 -24.10233 -23.36557 -21.11589 -20.69671 -19.85320 -19.09306 -17.28730 -17.00915 -16.87525 -16.08580 -15.88766 -15.29201 -15.11165 -14.77185 -14.74244 -14.02943 -13.73981 -13.60029 -13.17739 -13.01473 -12.75178 -12.53509 -11.96058 -11.87043 -11.80558 -11.45012 -11.41874 -11.26852 -11.11713 -10.84734 -10.71594 -10.55973 -10.29855 -10.18935 -9.87965 -9.85452 -9.83294 -9.51500 -9.13378 -8.88921 -6.99066 -5.80307 -3.09491 2.41959 3.01963 3.41537 3.45999 3.47255 3.86887 4.25372 4.32257 4.39812 4.56164 4.56882 4.82329 4.91109 4.98810 5.00004 5.15701 5.18427 5.34410 5.37764 5.43524 5.45620 5.47701 5.64374 5.76497 5.78981 5.84130 5.88429 5.98417 6.05789 6.08410 6.19253 6.26189 6.31188 6.38319 6.54897 6.78282 7.07411 7.32365 7.59892 7.66208 8.06217 8.38202 9.49123 10.07148 10.41279 11.41969 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041724 B = 0.002486 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.916814 B =11262.294059 C =11377.971262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.074 0.926 12 C -0.142 4.142 13 C -0.128 4.128 14 H 0.088 0.912 15 C 0.130 3.870 16 N -0.722 5.722 17 C 0.513 3.487 18 O -0.547 6.547 19 C -0.165 4.165 20 C 0.129 3.871 21 O -0.548 6.548 22 C -0.161 4.161 23 C -0.136 4.136 24 C -0.129 4.129 25 C -0.161 4.161 26 H 0.257 0.743 27 H 0.385 0.615 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.401 0.599 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.390 0.610 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 -23.514 -6.994 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.092 0.908 12 C -0.181 4.181 13 C -0.147 4.147 14 H 0.106 0.894 15 C 0.007 3.993 16 N -0.372 5.372 17 C 0.300 3.700 18 O -0.426 6.426 19 C -0.206 4.206 20 C 0.087 3.913 21 O -0.360 6.360 22 C -0.199 4.199 23 C -0.173 4.173 24 C -0.166 4.166 25 C -0.202 4.202 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.235 0.765 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.245 0.755 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.911 -23.757 -7.318 25.339 hybrid contribution 0.542 1.395 0.428 1.556 sum 5.453 -22.362 -6.890 24.027 Atomic orbital electron populations 1.69648 1.05146 1.25912 1.57294 1.24777 0.95532 0.97815 1.02775 0.86261 0.78537 0.83484 0.77847 1.21235 1.21661 1.21227 1.19248 0.91025 0.84245 1.43159 0.91161 1.42403 1.05758 0.99868 1.87053 1.21512 0.95232 0.85080 0.92814 0.90761 1.23432 1.00930 0.97057 0.96729 1.22645 0.98429 0.94496 0.99134 0.89402 1.21476 0.95075 0.91858 0.90889 1.46103 1.12968 1.35788 1.42319 1.20651 0.87741 0.80486 0.81145 1.90583 1.15447 1.69951 1.66630 1.22374 1.00270 0.99100 0.98807 1.21782 0.86505 0.89534 0.93505 1.86332 1.44507 1.60300 1.44868 1.23596 1.02958 0.96454 0.96875 1.22778 0.99945 0.97173 0.97407 1.23062 0.98765 0.94604 1.00177 1.23953 1.01296 0.94802 1.00160 0.93361 0.78058 0.91982 0.90081 0.91697 0.91091 0.76454 0.87993 0.87820 0.75522 0.89926 0.90508 0.89836 0.91438 0.90464 0.88920 0.90335 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.74 9.97 -15.06 -0.15 -6.89 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -17.61 5.41 -52.64 -0.28 -17.90 16 10 C 0.17 3.13 4.47 -67.12 -0.30 2.83 16 11 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 12 C -0.14 -2.19 7.39 -25.92 -0.19 -2.38 16 13 C -0.13 -1.62 3.75 -89.81 -0.34 -1.95 16 14 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 15 C 0.13 1.60 5.51 -4.04 -0.02 1.57 16 16 N -0.72 -7.25 5.56 -60.30 -0.33 -7.59 16 17 C 0.51 5.63 7.57 -10.99 -0.08 5.55 16 18 O -0.55 -7.81 13.63 -13.59 -0.19 -8.00 16 19 C -0.17 -1.31 5.33 -27.88 -0.15 -1.46 16 20 C 0.13 1.24 1.09 -89.81 -0.10 1.14 16 21 O -0.55 -6.83 13.40 -54.38 -0.73 -7.56 16 22 C -0.16 -1.47 7.07 -25.83 -0.18 -1.66 16 23 C -0.14 -1.08 8.02 -25.83 -0.21 -1.29 16 24 C -0.13 -0.98 7.47 -25.92 -0.19 -1.18 16 25 C -0.16 -2.57 7.43 -25.92 -0.19 -2.77 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.39 10.16 7.91 -40.82 -0.32 9.84 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.01 7.84 -51.93 -0.41 0.60 16 32 H 0.40 3.03 8.47 -40.82 -0.35 2.68 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.57 8.09 -51.92 -0.42 0.15 16 35 H 0.39 4.99 6.33 45.56 0.29 5.28 16 36 H 0.08 0.64 8.06 -51.93 -0.42 0.23 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.50 8.10 -51.92 -0.42 0.08 16 42 H 0.08 1.40 7.90 -51.93 -0.41 0.99 16 43 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -31.84 350.80 -9.40 -41.24 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -6.65 Total: 13.64 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.20 Total: -8.95 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.10 Total: -52.82 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.91 Total: -15.56 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.84 -9.40 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316616141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.934 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds