Wall clock time and date at job start Tue Mar 31 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48507 * 109.47224 * 239.99920 * 3 2 1 5 5 H 1.48498 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47107 * 119.99820 * 3 2 1 7 7 C 1.38814 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00081 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64824 * 345.75509 * 9 7 2 11 11 C 1.54907 * 104.83139 * 204.17457 * 10 9 7 12 12 C 1.55149 * 101.58451 * 322.99377 * 11 10 9 13 13 C 1.47017 * 125.64561 * 165.81443 * 9 7 2 14 14 H 1.09002 * 110.01240 * 59.40444 * 13 9 7 15 15 C 1.52996 * 109.88241 * 298.30608 * 13 9 7 16 16 N 1.46501 * 109.47510 * 176.74237 * 15 13 9 17 17 C 1.34771 * 120.00419 * 174.97477 * 16 15 13 18 18 O 1.21284 * 119.99941 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00314 * 179.72612 * 17 16 15 20 20 C 1.52997 * 109.47308 * 180.02562 * 19 17 16 21 21 H 1.08991 * 110.46129 * 54.29914 * 20 19 17 22 22 C 1.54507 * 110.51065 * 176.90634 * 20 19 17 23 23 C 1.54478 * 104.06801 * 118.63925 * 22 20 19 24 24 O 1.44425 * 104.79872 * 23.97847 * 23 22 20 25 25 C 1.44642 * 105.37191 * 319.56552 * 24 23 22 26 26 H 0.97006 * 119.99962 * 0.02562 * 1 2 3 27 27 H 1.09000 * 110.36341 * 85.33862 * 10 9 7 28 28 H 1.08996 * 110.46263 * 323.06784 * 10 9 7 29 29 H 1.09000 * 111.00652 * 204.91704 * 11 10 9 30 30 H 1.09001 * 111.03567 * 81.08336 * 11 10 9 31 31 H 1.09004 * 110.72370 * 277.14086 * 12 11 10 32 32 H 1.08996 * 110.72514 * 153.86228 * 12 11 10 33 33 H 1.09011 * 109.47315 * 56.74334 * 15 13 9 34 34 H 1.09000 * 109.47537 * 296.74968 * 15 13 9 35 35 H 0.96998 * 119.99708 * 354.97209 * 16 15 13 36 36 H 1.09001 * 109.46735 * 300.00198 * 19 17 16 37 37 H 1.09000 * 109.46948 * 59.99906 * 19 17 16 38 38 H 1.09000 * 110.51218 * 237.28622 * 22 20 19 39 39 H 1.09002 * 110.51251 * 359.97438 * 22 20 19 40 40 H 1.09000 * 110.37128 * 142.80771 * 23 22 20 41 41 H 1.08998 * 110.37159 * 265.03854 * 23 22 20 42 42 H 1.08999 * 110.34063 * 281.59534 * 25 24 23 43 43 H 1.09002 * 110.51156 * 159.18346 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1097 -2.5515 0.2948 11 6 -0.2519 -4.0181 0.7728 12 6 0.7659 -4.7451 -0.1451 13 6 1.9005 -3.7093 -0.2917 14 1 2.7000 -3.9328 0.4146 15 6 2.4466 -3.7346 -1.7207 16 7 3.0860 -5.0276 -1.9763 17 6 3.5519 -5.3174 -3.2073 18 8 3.4421 -4.5075 -4.1034 19 6 4.2152 -6.6451 -3.4688 20 6 4.6494 -6.7185 -4.9340 21 1 5.2739 -5.8627 -5.1897 22 6 5.4018 -8.0395 -5.2101 23 6 4.5338 -8.7513 -6.2714 24 8 3.8018 -7.6896 -6.9218 25 6 3.4157 -6.7848 -5.8615 26 1 -0.4850 0.8401 -0.0004 27 1 -0.7025 -2.3866 -0.6049 28 1 -0.4178 -1.8641 1.0825 29 1 -1.2635 -4.3876 0.6043 30 1 0.0280 -4.1167 1.8217 31 1 0.3201 -4.9685 -1.1144 32 1 1.1331 -5.6545 0.3304 33 1 3.1788 -2.9364 -1.8440 34 1 1.6279 -3.5884 -2.4253 35 1 3.1742 -5.6752 -1.2596 36 1 5.0892 -6.7474 -2.8256 37 1 3.5119 -7.4505 -3.2570 38 1 6.3975 -7.8366 -5.6046 39 1 5.4649 -8.6400 -4.3026 40 1 5.1655 -9.2725 -6.9907 41 1 3.8475 -9.4503 -5.7936 42 1 2.5554 -7.1796 -5.3209 43 1 3.1909 -5.7974 -6.2649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317511513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:57 Heat of formation + Delta-G solvation = -70.257713 kcal Electronic energy + Delta-G solvation = -22541.873024 eV Core-core repulsion = 19201.159211 eV Total energy + Delta-G solvation = -3340.713813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10308 -38.89845 -37.60619 -34.28296 -33.61180 -32.49694 -30.20836 -29.62758 -28.80789 -26.91243 -24.81662 -23.75327 -22.98484 -20.88894 -20.32207 -20.00923 -19.43717 -17.39282 -16.68103 -16.19733 -16.03846 -15.72396 -15.49157 -14.93378 -14.70747 -14.19919 -13.99652 -13.76500 -13.27450 -13.17433 -12.80056 -12.37051 -12.08071 -11.90514 -11.81231 -11.69258 -11.43007 -11.33364 -11.02443 -10.95551 -10.80449 -10.78781 -10.26758 -10.14649 -9.97577 -9.92843 -9.86674 -9.74613 -9.54943 -8.68639 -8.58721 -6.86496 -5.78378 -3.15287 2.84401 3.36997 3.41934 3.44592 3.45874 3.84675 4.36223 4.47524 4.55162 4.66879 4.86627 4.90193 5.12634 5.22738 5.31598 5.34350 5.38213 5.42617 5.47758 5.51683 5.60178 5.60563 5.71332 5.78407 5.89933 6.03553 6.08159 6.11319 6.21397 6.43206 6.52187 6.60289 6.64621 6.68941 6.79534 7.03677 7.49411 7.58388 7.76862 7.77359 8.23626 8.47257 9.15442 9.76087 10.43139 11.33410 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023582 B = 0.003526 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.061514 B = 7939.321020 C = 8608.683101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.036 0.964 15 C 0.109 3.891 16 N -0.724 5.724 17 C 0.503 3.497 18 O -0.541 6.541 19 C -0.134 4.134 20 C -0.105 4.105 21 H 0.092 0.908 22 C -0.153 4.153 23 C 0.043 3.957 24 O -0.380 6.380 25 C 0.054 3.946 26 H 0.255 0.745 27 H 0.025 0.975 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.185 -18.395 -4.365 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.188 4.188 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.017 4.017 16 N -0.375 5.375 17 C 0.288 3.712 18 O -0.419 6.419 19 C -0.174 4.174 20 C -0.124 4.124 21 H 0.111 0.889 22 C -0.190 4.190 23 C -0.034 4.034 24 O -0.299 6.299 25 C -0.022 4.022 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.228 0.772 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.964 -17.494 -5.212 19.537 hybrid contribution 0.552 0.581 0.594 0.997 sum 7.515 -16.913 -4.619 19.075 Atomic orbital electron populations 1.69928 1.05028 1.25463 1.55736 1.24912 0.95684 0.97882 1.01321 0.86221 0.78602 0.83045 0.78030 1.20937 1.21526 1.21058 1.18934 0.90359 0.82208 1.44902 0.90717 1.44471 1.06115 1.00878 1.79856 1.21458 0.84736 0.90218 0.98861 1.23007 0.97524 0.99632 0.98591 1.22603 0.97114 0.96944 0.99710 1.21122 0.94438 0.88063 0.92030 0.94595 1.22230 0.97188 0.82952 0.99286 1.46170 1.60319 1.19867 1.11136 1.20598 0.78912 0.88848 0.82801 1.90712 1.57120 1.50087 1.43955 1.21782 1.01788 0.96176 0.97643 1.22276 0.97728 0.98629 0.93799 0.88936 1.23036 0.99966 0.96223 0.99812 1.23383 0.94040 0.90812 0.95143 1.89164 1.73877 1.35961 1.30850 1.23562 0.95505 0.94831 0.88304 0.93518 0.95658 0.90872 0.92347 0.92308 0.91865 0.92443 0.91592 0.91665 0.77189 0.88658 0.88930 0.90485 0.90305 0.89359 0.92447 0.92536 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.56 55.49 0.59 -26.01 16 2 C 0.00 -0.02 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.43 9.75 -15.06 -0.15 -6.58 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -14.50 3.13 -162.58 -0.51 -15.00 16 10 C 0.17 4.07 5.42 -2.53 -0.01 4.06 16 11 C -0.15 -2.68 7.08 -24.59 -0.17 -2.86 16 12 C -0.13 -2.04 6.14 -24.90 -0.15 -2.19 16 13 C 0.15 2.93 3.21 -66.95 -0.21 2.72 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 15 C 0.11 2.05 5.08 -4.04 -0.02 2.03 16 16 N -0.72 -10.18 5.34 -60.29 -0.32 -10.50 16 17 C 0.50 7.18 7.63 -10.99 -0.08 7.10 16 18 O -0.54 -10.14 14.92 5.55 0.08 -10.05 16 19 C -0.13 -1.26 4.91 -27.88 -0.14 -1.39 16 20 C -0.11 -1.09 2.71 -89.05 -0.24 -1.33 16 21 H 0.09 1.11 7.96 -51.93 -0.41 0.70 16 22 C -0.15 -1.18 6.74 -25.16 -0.17 -1.35 16 23 C 0.04 0.37 7.64 37.93 0.29 0.66 16 24 O -0.38 -4.76 11.65 -35.23 -0.41 -5.17 16 25 C 0.05 0.66 6.31 37.94 0.24 0.90 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 28 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.02 7.80 -51.93 -0.40 0.62 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.43 7.90 -51.92 -0.41 1.02 16 34 H 0.06 1.39 8.06 -51.93 -0.42 0.98 16 35 H 0.40 4.25 8.36 -40.82 -0.34 3.91 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.69 8.02 -51.93 -0.42 0.27 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.46 7.73 -51.93 -0.40 0.06 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.65 7.78 -51.93 -0.40 0.25 16 43 H 0.10 1.43 7.71 -51.93 -0.40 1.03 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -32.26 342.11 -8.68 -40.94 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.32 Total: 1.97 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -0.92 Total: 1.65 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.24 Total: -51.52 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.33 Total: -15.23 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.26 -8.68 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317511513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.322 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds