Wall clock time and date at job start Tue Mar 31 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48507 * 109.47224 * 239.99920 * 3 2 1 5 5 H 1.48498 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47107 * 119.99820 * 3 2 1 7 7 C 1.38814 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00081 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64824 * 345.75509 * 9 7 2 11 11 C 1.54907 * 104.83139 * 204.17457 * 10 9 7 12 12 C 1.55149 * 101.58451 * 322.99377 * 11 10 9 13 13 C 1.47017 * 125.64561 * 165.81443 * 9 7 2 14 14 H 1.09002 * 110.01240 * 59.40444 * 13 9 7 15 15 C 1.52996 * 109.88241 * 298.30608 * 13 9 7 16 16 N 1.46501 * 109.47510 * 176.74237 * 15 13 9 17 17 C 1.34771 * 120.00419 * 174.97477 * 16 15 13 18 18 O 1.21284 * 119.99941 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00314 * 179.72612 * 17 16 15 20 20 C 1.52997 * 109.47308 * 180.02562 * 19 17 16 21 21 H 1.08991 * 110.46129 * 54.29914 * 20 19 17 22 22 C 1.54507 * 110.51065 * 176.90634 * 20 19 17 23 23 C 1.54478 * 104.06801 * 118.63925 * 22 20 19 24 24 O 1.44425 * 104.79872 * 23.97847 * 23 22 20 25 25 C 1.44642 * 105.37191 * 319.56552 * 24 23 22 26 26 H 0.97006 * 119.99962 * 0.02562 * 1 2 3 27 27 H 1.09000 * 110.36341 * 85.33862 * 10 9 7 28 28 H 1.08996 * 110.46263 * 323.06784 * 10 9 7 29 29 H 1.09000 * 111.00652 * 204.91704 * 11 10 9 30 30 H 1.09001 * 111.03567 * 81.08336 * 11 10 9 31 31 H 1.09004 * 110.72370 * 277.14086 * 12 11 10 32 32 H 1.08996 * 110.72514 * 153.86228 * 12 11 10 33 33 H 1.09011 * 109.47315 * 56.74334 * 15 13 9 34 34 H 1.09000 * 109.47537 * 296.74968 * 15 13 9 35 35 H 0.96998 * 119.99708 * 354.97209 * 16 15 13 36 36 H 1.09001 * 109.46735 * 300.00198 * 19 17 16 37 37 H 1.09000 * 109.46948 * 59.99906 * 19 17 16 38 38 H 1.09000 * 110.51218 * 237.28622 * 22 20 19 39 39 H 1.09002 * 110.51251 * 359.97438 * 22 20 19 40 40 H 1.09000 * 110.37128 * 142.80771 * 23 22 20 41 41 H 1.08998 * 110.37159 * 265.03854 * 23 22 20 42 42 H 1.08999 * 110.34063 * 281.59534 * 25 24 23 43 43 H 1.09002 * 110.51156 * 159.18346 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1097 -2.5515 0.2948 11 6 -0.2519 -4.0181 0.7728 12 6 0.7659 -4.7451 -0.1451 13 6 1.9005 -3.7093 -0.2917 14 1 2.7000 -3.9328 0.4146 15 6 2.4466 -3.7346 -1.7207 16 7 3.0860 -5.0276 -1.9763 17 6 3.5519 -5.3174 -3.2073 18 8 3.4421 -4.5075 -4.1034 19 6 4.2152 -6.6451 -3.4688 20 6 4.6494 -6.7185 -4.9340 21 1 5.2739 -5.8627 -5.1897 22 6 5.4018 -8.0395 -5.2101 23 6 4.5338 -8.7513 -6.2714 24 8 3.8018 -7.6896 -6.9218 25 6 3.4157 -6.7848 -5.8615 26 1 -0.4850 0.8401 -0.0004 27 1 -0.7025 -2.3866 -0.6049 28 1 -0.4178 -1.8641 1.0825 29 1 -1.2635 -4.3876 0.6043 30 1 0.0280 -4.1167 1.8217 31 1 0.3201 -4.9685 -1.1144 32 1 1.1331 -5.6545 0.3304 33 1 3.1788 -2.9364 -1.8440 34 1 1.6279 -3.5884 -2.4253 35 1 3.1742 -5.6752 -1.2596 36 1 5.0892 -6.7474 -2.8256 37 1 3.5119 -7.4505 -3.2570 38 1 6.3975 -7.8366 -5.6046 39 1 5.4649 -8.6400 -4.3026 40 1 5.1655 -9.2725 -6.9907 41 1 3.8475 -9.4503 -5.7936 42 1 2.5554 -7.1796 -5.3209 43 1 3.1909 -5.7974 -6.2649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317511513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:57 Heat of formation + Delta-G solvation = -93.463717 kcal Electronic energy + Delta-G solvation = -22542.879312 eV Core-core repulsion = 19201.159211 eV Total energy + Delta-G solvation = -3341.720101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14237 -39.98291 -39.15637 -35.72789 -34.50739 -34.38541 -31.51996 -30.94523 -30.22059 -27.96333 -26.64689 -25.31528 -23.77649 -22.10938 -21.71964 -21.27637 -20.83280 -18.89428 -18.10269 -17.38709 -17.13417 -16.80241 -16.65778 -16.36026 -15.96812 -15.68715 -15.57733 -14.96061 -14.54861 -14.26606 -13.98999 -13.70501 -13.64713 -13.45557 -13.06875 -12.93060 -12.86295 -12.65709 -12.52436 -12.11688 -12.07253 -11.92044 -11.82853 -11.70751 -11.50868 -11.48365 -11.39893 -10.81751 -10.74628 -10.68657 -10.02223 -8.87246 -7.89807 -5.27371 1.42715 1.46333 1.51815 1.71911 2.22702 2.49487 3.07444 3.29808 3.54975 3.73467 3.80638 3.88974 3.95049 3.99910 4.09810 4.25213 4.26996 4.35529 4.46267 4.49956 4.57190 4.62058 4.73080 4.79429 4.88889 4.90022 4.96176 4.98011 5.01173 5.15265 5.17175 5.22952 5.27516 5.41279 5.46004 5.59966 5.65873 5.77210 5.87937 6.21990 6.67075 7.07695 7.37352 7.75431 8.40933 9.20828 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023582 B = 0.003526 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.061514 B = 7939.321020 C = 8608.683101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.972 3.028 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.612 5.612 10 C 0.173 3.827 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.148 3.852 14 H 0.053 0.947 15 C 0.129 3.871 16 N -0.709 5.709 17 C 0.497 3.503 18 O -0.594 6.594 19 C -0.118 4.118 20 C -0.106 4.106 21 H 0.067 0.933 22 C -0.141 4.141 23 C 0.034 3.966 24 O -0.409 6.409 25 C 0.052 3.948 26 H 0.248 0.752 27 H -0.011 1.011 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.028 0.972 34 H 0.031 0.969 35 H 0.417 0.583 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.833 -22.057 -3.096 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.800 3.200 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.337 5.337 10 C 0.048 3.952 11 C -0.172 4.172 12 C -0.149 4.149 13 C 0.040 3.960 14 H 0.071 0.929 15 C 0.003 3.997 16 N -0.362 5.362 17 C 0.285 3.715 18 O -0.475 6.475 19 C -0.158 4.158 20 C -0.126 4.126 21 H 0.085 0.915 22 C -0.179 4.179 23 C -0.042 4.042 24 O -0.329 6.329 25 C -0.024 4.024 26 H 0.057 0.943 27 H 0.007 0.993 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.255 0.745 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.648 -21.230 -3.917 23.256 hybrid contribution 0.071 1.669 0.135 1.676 sum 8.718 -19.560 -3.782 21.747 Atomic orbital electron populations 1.70139 1.06304 1.25458 1.57510 1.25691 0.96518 1.01048 1.02164 0.85258 0.77339 0.79205 0.78193 1.20961 1.21938 1.19761 1.19270 0.90749 0.83687 1.43348 0.90556 1.44751 1.06565 1.02125 1.80238 1.21270 0.84083 0.93662 0.96221 1.22871 0.99672 0.95207 0.99481 1.22594 0.95020 0.97431 0.99829 1.21355 0.96072 0.86578 0.91956 0.92894 1.21609 0.95268 0.84524 0.98347 1.45885 1.59715 1.18363 1.12189 1.21610 0.77909 0.90209 0.81736 1.90710 1.58940 1.52244 1.45565 1.21816 1.03296 0.93355 0.97304 1.22237 0.96780 0.99435 0.94102 0.91472 1.23010 0.99369 0.94573 1.00899 1.23682 0.94482 0.90180 0.95862 1.89131 1.74637 1.37166 1.31936 1.23481 0.96884 0.93413 0.88645 0.94319 0.99334 0.94558 0.90002 0.91013 0.91825 0.87355 0.95334 0.95040 0.74545 0.85175 0.85503 0.90038 0.87071 0.87988 0.90749 0.91805 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.55 10.56 21.65 0.23 -57.33 16 2 C -0.06 -3.49 5.47 84.86 0.46 -3.02 16 3 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.24 -13.51 9.75 84.03 0.82 -12.69 16 8 H 0.08 4.13 7.83 -2.92 -0.02 4.11 16 9 N -0.61 -30.67 3.13 -668.27 -2.09 -32.76 16 10 C 0.17 8.39 5.42 86.85 0.47 8.87 16 11 C -0.13 -4.52 7.08 31.98 0.23 -4.30 16 12 C -0.11 -3.21 6.14 31.78 0.20 -3.02 16 13 C 0.15 5.50 3.21 45.34 0.15 5.64 16 14 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 15 C 0.13 4.91 5.08 86.38 0.44 5.35 16 16 N -0.71 -18.38 5.34 -463.06 -2.47 -20.85 16 17 C 0.50 13.46 7.63 87.66 0.67 14.13 16 18 O -0.59 -22.88 14.92 -3.04 -0.05 -22.93 16 19 C -0.12 -1.76 4.91 29.85 0.15 -1.62 16 20 C -0.11 -2.00 2.71 -9.78 -0.03 -2.03 16 21 H 0.07 1.60 7.96 -2.39 -0.02 1.58 16 22 C -0.14 -1.66 6.74 31.61 0.21 -1.44 16 23 C 0.03 0.49 7.64 72.48 0.55 1.04 16 24 O -0.41 -9.99 11.65 -148.98 -1.74 -11.73 16 25 C 0.05 1.26 6.31 72.49 0.46 1.72 16 26 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 27 H -0.01 -0.62 8.07 -2.39 -0.02 -0.64 16 28 H 0.04 1.99 6.90 -2.39 -0.02 1.98 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.06 1.87 7.80 -2.38 -0.02 1.85 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 1.28 7.90 -2.38 -0.02 1.26 16 34 H 0.03 1.40 8.06 -2.39 -0.02 1.38 16 35 H 0.42 7.11 8.36 -92.71 -0.78 6.34 16 36 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.13 1.14 8.02 -2.39 -0.02 1.12 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.11 0.63 7.73 -2.39 -0.02 0.61 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 1.40 7.78 -2.39 -0.02 1.38 16 43 H 0.07 2.05 7.71 -2.39 -0.02 2.04 16 Total: -1.00 -77.54 342.11 0.90 -76.65 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.21 Total: 11.61 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 4.77 Total: 8.64 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -4.33 Total: -110.93 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -1.78 Total: -34.65 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -77.54 0.90 -76.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317511513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.817 kcal (2) G-P(sol) polarization free energy of solvation -77.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds