Wall clock time and date at job start Tue Mar 31 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86794 * 120.00154 * 2 1 4 4 H 1.48497 * 109.47246 * 274.98369 * 3 2 1 5 5 H 1.48504 * 109.46875 * 34.98304 * 3 2 1 6 6 H 1.48504 * 109.47190 * 154.97791 * 3 2 1 7 7 C 1.40053 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99745 * 186.15319 * 7 2 1 9 9 C 1.46378 * 120.00212 * 6.15518 * 7 2 1 10 10 O 1.21690 * 119.99529 * 353.94025 * 9 7 2 11 11 N 1.34771 * 120.00209 * 173.93672 * 9 7 2 12 12 C 1.46499 * 120.00381 * 179.97438 * 11 9 7 13 13 C 1.53110 * 109.52473 * 154.99932 * 12 11 9 14 14 C 1.53042 * 109.27838 * 177.55983 * 13 12 11 15 15 N 1.46845 * 109.52282 * 300.82158 * 14 13 12 16 16 C 1.46897 * 111.00106 * 185.83801 * 15 14 13 17 17 C 1.53004 * 109.47369 * 170.00190 * 16 15 14 18 18 H 1.08999 * 109.86716 * 59.29765 * 17 16 15 19 19 C 1.54101 * 109.87754 * 180.30813 * 17 16 15 20 20 C 1.54808 * 104.18582 * 121.45532 * 19 17 16 21 21 C 1.54990 * 102.09391 * 20.87563 * 20 19 17 22 22 O 1.43741 * 109.87784 * 298.29278 * 17 16 15 23 23 C 1.46852 * 111.19691 * 61.74204 * 15 14 13 24 24 C 1.53040 * 109.52482 * 298.25503 * 23 15 14 25 25 H 0.96996 * 120.00249 * 0.02562 * 1 2 3 26 26 H 0.97008 * 119.99590 * 0.02562 * 11 9 7 27 27 H 1.09003 * 109.51984 * 34.87226 * 12 11 9 28 28 H 1.09005 * 109.50711 * 57.62147 * 13 12 11 29 29 H 1.08997 * 109.54016 * 297.52313 * 13 12 11 30 30 H 1.09001 * 109.46020 * 180.80916 * 14 13 12 31 31 H 1.08999 * 109.45348 * 60.83242 * 14 13 12 32 32 H 1.09001 * 109.47017 * 290.00169 * 16 15 14 33 33 H 1.09000 * 109.47235 * 50.00173 * 16 15 14 34 34 H 1.09005 * 110.48511 * 240.12573 * 19 17 16 35 35 H 1.09000 * 110.49045 * 2.77272 * 19 17 16 36 36 H 1.09007 * 110.90765 * 139.07935 * 20 19 17 37 37 H 1.09002 * 110.90543 * 262.67780 * 20 19 17 38 38 H 1.08998 * 110.61847 * 81.48171 * 21 20 19 39 39 H 1.09002 * 110.61986 * 204.31513 * 21 20 19 40 40 H 1.08994 * 109.45966 * 58.27437 * 23 15 14 41 41 H 1.08998 * 109.46003 * 178.24130 * 23 15 14 42 42 H 1.09007 * 109.50102 * 299.24328 * 24 23 15 43 43 H 1.08992 * 109.50371 * 179.12074 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4948 2.6199 0.8027 6 1 3.5870 1.4120 0.5922 7 6 2.0070 -1.2129 0.0005 8 1 3.0823 -1.2155 0.1008 9 6 1.2814 -2.4770 -0.1348 10 8 0.0645 -2.4828 -0.1369 11 7 1.9611 -3.6343 -0.2572 12 6 1.2350 -4.8995 -0.3921 13 6 2.1177 -5.9218 -1.1133 14 6 1.3775 -7.2586 -1.1972 15 7 1.0591 -7.7291 0.1569 16 6 0.4716 -9.0750 0.1221 17 6 0.3844 -9.6304 1.5451 18 1 -0.2299 -8.9744 2.1619 19 6 -0.2239 -11.0460 1.5186 20 6 0.8623 -11.9380 2.1676 21 6 1.6978 -10.9041 2.9646 22 8 1.7021 -9.7388 2.1090 23 6 0.1736 -6.7861 0.8521 24 6 0.8779 -5.4352 0.9972 25 1 -0.4850 0.8400 -0.0004 26 1 2.9311 -3.6296 -0.2552 27 1 0.3228 -4.7366 -0.9662 28 1 3.0473 -6.0547 -0.5599 29 1 2.3408 -5.5656 -2.1190 30 1 2.0091 -7.9927 -1.6975 31 1 0.4548 -7.1279 -1.7625 32 1 -0.5279 -9.0240 -0.3098 33 1 1.0971 -9.7289 -0.4855 34 1 -1.1430 -11.0773 2.1039 35 1 -0.4132 -11.3609 0.4924 36 1 0.4137 -12.6735 2.8355 37 1 1.4708 -12.4260 1.4063 38 1 1.2195 -10.6765 3.9173 39 1 2.7119 -11.2708 3.1237 40 1 -0.7434 -6.6578 0.2771 41 1 -0.0692 -7.1770 1.8402 42 1 1.7880 -5.5604 1.5839 43 1 0.2145 -4.7310 1.4993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320681544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:30 Heat of formation + Delta-G solvation = -89.165672 kcal Electronic energy + Delta-G solvation = -22604.858150 eV Core-core repulsion = 19263.324427 eV Total energy + Delta-G solvation = -3341.533723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.82306 -38.64105 -36.85865 -34.09398 -32.42567 -32.24749 -31.18872 -30.52076 -29.14173 -26.35192 -25.00045 -23.09330 -22.67997 -21.79450 -20.77000 -19.67093 -19.31138 -17.07301 -16.76230 -16.08909 -15.58547 -15.51661 -15.27236 -14.62660 -14.34046 -14.03070 -13.91645 -13.80936 -13.41776 -12.93635 -12.48728 -12.28179 -12.20353 -12.06494 -11.87868 -11.79218 -11.36345 -11.29216 -11.12330 -11.02430 -10.91238 -10.85759 -10.61986 -10.39420 -10.19468 -10.12407 -9.88939 -9.65509 -8.80297 -8.12875 -7.53450 -7.39995 -6.14196 -4.57849 3.16998 3.24095 3.27887 3.67716 4.02710 4.14991 4.32657 4.53984 4.63421 4.67690 4.83504 4.85353 5.03067 5.17721 5.19726 5.27789 5.40331 5.42666 5.48253 5.48793 5.52747 5.64206 5.67422 5.72186 5.78005 5.87796 5.90731 5.96418 6.05854 6.13447 6.17256 6.38880 6.52468 6.75847 6.83033 6.95894 7.26008 7.30377 7.48793 8.01928 8.20893 8.41246 9.08041 9.63033 10.65787 10.85457 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041334 B = 0.003028 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.251716 B = 9243.484648 C = 9313.731839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.582 6.582 11 N -0.762 5.762 12 C 0.157 3.843 13 C -0.121 4.121 14 C 0.063 3.937 15 N -0.529 5.529 16 C 0.058 3.942 17 C 0.080 3.920 18 H 0.068 0.932 19 C -0.153 4.153 20 C -0.154 4.154 21 C 0.041 3.959 22 O -0.350 6.350 23 C 0.058 3.942 24 C -0.122 4.122 25 H 0.267 0.733 26 H 0.380 0.620 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -21.818 1.950 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.465 6.465 11 N -0.416 5.416 12 C 0.050 3.950 13 C -0.159 4.159 14 C -0.066 4.066 15 N -0.253 5.253 16 C -0.071 4.071 17 C 0.021 3.979 18 H 0.086 0.914 19 C -0.191 4.191 20 C -0.192 4.192 21 C -0.036 4.036 22 O -0.269 6.269 23 C -0.070 4.070 24 C -0.162 4.162 25 H 0.078 0.922 26 H 0.211 0.789 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.379 -21.563 2.160 21.715 hybrid contribution -0.069 0.652 -0.366 0.750 sum 1.310 -20.912 1.794 21.029 Atomic orbital electron populations 1.70031 1.07056 1.27114 1.35609 1.25700 0.94574 1.00247 0.92640 0.86385 0.80277 0.81618 0.78608 1.19869 1.20519 1.18901 1.20911 0.94098 0.89709 1.53661 0.91470 1.18200 0.87142 0.82447 0.76199 1.90584 1.14106 1.86538 1.55310 1.46165 1.08462 1.05535 1.81400 1.20488 0.95557 0.84423 0.94535 1.21848 0.99479 0.93765 1.00856 1.22012 0.98804 0.96835 0.88901 1.61895 1.44738 1.01173 1.17506 1.22270 0.98105 0.91253 0.95423 1.22791 0.85027 0.95345 0.94691 0.91387 1.22994 0.99026 0.94847 1.02215 1.23116 0.97601 0.98406 1.00074 1.23574 1.00776 0.85526 0.93755 1.89109 1.29705 1.45818 1.62267 1.22136 0.93604 0.92981 0.98253 1.21982 1.00900 0.94229 0.99052 0.92234 0.78919 0.91256 0.91050 0.91411 0.91025 0.95058 0.93914 0.90365 0.90650 0.90398 0.90475 0.90573 0.92500 0.89191 0.95113 0.91116 0.91632 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.42 11.85 55.55 0.66 -22.76 16 2 C 0.09 2.49 5.49 -17.37 -0.10 2.40 16 3 Si 0.91 20.50 29.56 -169.99 -5.03 15.47 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.55 -15.74 9.54 -35.63 -0.34 -16.08 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.56 16.07 7.71 -12.99 -0.10 15.97 16 10 O -0.58 -19.03 14.71 5.20 0.08 -18.95 16 11 N -0.76 -17.52 5.08 -55.10 -0.28 -17.80 16 12 C 0.16 3.12 2.52 -67.81 -0.17 2.94 16 13 C -0.12 -1.89 5.57 -26.65 -0.15 -2.04 16 14 C 0.06 0.86 5.46 -3.83 -0.02 0.84 16 15 N -0.53 -7.46 4.57 -234.67 -1.07 -8.54 16 16 C 0.06 0.66 4.43 -3.82 -0.02 0.64 16 17 C 0.08 0.86 3.29 -26.15 -0.09 0.78 16 18 H 0.07 0.77 6.42 -51.93 -0.33 0.44 16 19 C -0.15 -1.19 6.64 -25.20 -0.17 -1.36 16 20 C -0.15 -1.09 7.16 -24.73 -0.18 -1.27 16 21 C 0.04 0.36 7.72 38.21 0.29 0.66 16 22 O -0.35 -4.47 11.11 -35.23 -0.39 -4.86 16 23 C 0.06 0.91 5.29 -3.83 -0.02 0.88 16 24 C -0.12 -2.30 5.67 -26.65 -0.15 -2.45 16 25 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 26 H 0.38 7.79 8.59 -40.82 -0.35 7.44 16 27 H 0.07 1.58 7.57 -51.93 -0.39 1.18 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.85 8.02 -51.93 -0.42 0.44 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.08 0.84 7.99 -51.93 -0.41 0.42 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.54 7.70 -51.93 -0.40 0.14 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 1.03 6.21 -51.93 -0.32 0.70 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -34.86 341.02 -9.34 -44.20 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.25 Total: 6.18 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.20 Total: 1.92 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.69 Total: -49.10 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.31 Total: -23.81 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.86 -9.34 -44.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320681544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.962 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds