Wall clock time and date at job start Tue Mar 31 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48501 * 109.46949 * 239.99656 * 3 2 1 5 5 H 1.48499 * 109.47367 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47219 * 119.99889 * 3 2 1 7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99489 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47296 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47301 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47302 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47011 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00023 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00003 * 180.02562 * 13 12 11 16 16 C 1.46491 * 120.00091 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.46957 * 179.97438 * 16 15 13 18 18 O 1.21283 * 120.00262 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72354 * 17 16 15 20 20 C 1.47021 * 125.64880 * 359.97385 * 19 17 16 21 21 C 1.54315 * 107.27662 * 180.96527 * 20 19 17 22 22 C 1.55159 * 102.86487 * 22.52300 * 21 20 19 23 23 C 1.47428 * 125.65051 * 180.27344 * 19 17 16 24 24 H 0.97009 * 119.99878 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47069 * 60.00068 * 9 7 2 26 26 H 1.09000 * 109.47667 * 300.00256 * 9 7 2 27 27 H 1.09004 * 109.47038 * 60.00010 * 10 9 7 28 28 H 1.08994 * 109.47249 * 300.00006 * 10 9 7 29 29 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 30 30 H 1.09000 * 109.47665 * 300.00218 * 11 10 9 31 31 H 1.08998 * 109.46547 * 60.00631 * 12 11 10 32 32 H 1.08994 * 109.47099 * 300.00442 * 12 11 10 33 33 H 0.97003 * 119.99349 * 0.02562 * 15 13 12 34 34 H 1.09004 * 109.47166 * 60.00164 * 16 15 13 35 35 H 1.08994 * 109.47507 * 299.99870 * 16 15 13 36 36 H 1.08998 * 109.88109 * 300.51046 * 20 19 17 37 37 H 1.09001 * 109.88624 * 61.67549 * 20 19 17 38 38 H 1.09000 * 110.92562 * 264.10677 * 21 20 19 39 39 H 1.09003 * 110.59336 * 140.78334 * 21 20 19 40 40 H 1.08994 * 111.00670 * 206.22889 * 22 21 20 41 41 H 1.09000 * 110.99915 * 82.37681 * 22 21 20 42 42 H 1.08994 * 110.37091 * 274.68026 * 23 19 17 43 43 H 1.09002 * 110.36001 * 36.89286 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0018 13 6 1.7208 -7.4551 0.0018 14 8 0.5080 -7.4550 0.0009 15 7 2.3946 -8.6224 0.0029 16 6 1.6621 -9.8910 0.0023 17 6 2.6414 -11.0365 0.0031 18 8 3.8338 -10.8149 0.0045 19 7 2.1921 -12.3071 0.0083 20 6 0.7801 -12.7167 0.0143 21 6 0.7505 -14.2593 0.0438 22 6 2.1401 -14.6203 0.6321 23 6 3.0351 -13.5166 0.0154 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8902 27 1 2.8711 -3.6040 0.8923 28 1 2.8725 -3.6048 -0.8876 29 1 0.8545 -5.0449 -0.8895 30 1 0.8524 -5.0447 0.8904 31 1 3.1002 -6.0924 0.8923 32 1 3.1017 -6.0922 -0.8876 33 1 3.3646 -8.6223 0.0040 34 1 1.0365 -9.9489 -0.8884 35 1 1.0344 -9.9486 0.8915 36 1 0.2821 -12.3175 0.8978 37 1 0.2855 -12.3556 -0.8875 38 1 0.6399 -14.6658 -0.9615 39 1 -0.0482 -14.6150 0.6948 40 1 2.4581 -15.6099 0.3041 41 1 2.1326 -14.5547 1.7201 42 1 3.3221 -13.7850 -1.0012 43 1 3.9215 -13.3575 0.6296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324078539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:06 Heat of formation + Delta-G solvation = -96.917621 kcal Electronic energy + Delta-G solvation = -21086.014269 eV Core-core repulsion = 17744.144396 eV Total energy + Delta-G solvation = -3341.869873 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68982 -39.47963 -37.88105 -34.98674 -34.44656 -32.61308 -32.35847 -30.13203 -29.61554 -27.89097 -25.41167 -23.87629 -22.24529 -21.72604 -20.38716 -19.97111 -19.78260 -17.75352 -17.23050 -16.70201 -16.25157 -16.03158 -15.85811 -15.28833 -14.82579 -14.40043 -14.17032 -14.08156 -13.86989 -13.56930 -13.24087 -12.91715 -12.69634 -12.56023 -12.04262 -11.95096 -11.82147 -11.64203 -11.56687 -11.35785 -10.93342 -10.51538 -10.48089 -10.40487 -10.36030 -9.86726 -9.56619 -9.28840 -9.19554 -9.18719 -8.95586 -8.26763 -5.91801 -3.94125 2.09397 2.28598 2.71491 3.19114 3.38097 3.42145 3.44749 3.80786 3.96154 4.25829 4.30825 4.52044 4.65368 4.76577 4.86841 4.96925 5.02226 5.12251 5.14514 5.25870 5.27709 5.36503 5.39204 5.42690 5.44586 5.54011 5.71341 5.91559 6.18609 6.19214 6.35522 6.59676 6.89017 6.91128 7.06744 7.24645 7.43452 7.58930 7.77746 7.94317 8.09846 8.23799 8.51834 9.13378 9.69222 11.19471 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.061128 B = 0.002045 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.946328 B =13688.352361 C =14072.644860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.103 4.103 12 C -0.137 4.137 13 C 0.516 3.484 14 O -0.537 6.537 15 N -0.729 5.729 16 C 0.106 3.894 17 C 0.526 3.474 18 O -0.535 6.535 19 N -0.619 5.619 20 C 0.093 3.907 21 C -0.132 4.132 22 C -0.135 4.135 23 C 0.104 3.896 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.411 0.589 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 -32.781 0.323 32.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.149 4.149 11 C -0.141 4.141 12 C -0.177 4.177 13 C 0.304 3.696 14 O -0.413 6.413 15 N -0.386 5.386 16 C -0.022 4.022 17 C 0.314 3.686 18 O -0.412 6.412 19 N -0.354 5.354 20 C -0.030 4.030 21 C -0.170 4.170 22 C -0.173 4.173 23 C -0.018 4.018 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.249 0.751 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.076 -32.447 0.318 32.594 hybrid contribution 0.812 0.794 -0.024 1.136 sum 3.889 -31.653 0.294 31.892 Atomic orbital electron populations 1.69970 1.06031 1.26569 1.50935 1.25043 0.94855 0.99214 0.95499 0.86664 0.79558 0.83247 0.78538 1.20308 1.21342 1.20302 1.21257 0.92968 0.91225 1.50404 0.92796 1.19094 0.94065 0.91257 0.97304 1.21656 0.99094 0.93969 1.00148 1.21457 0.96996 0.92671 1.02959 1.21789 1.00113 0.91503 1.04301 1.21144 0.88386 0.85319 0.74757 1.90702 1.14177 1.87673 1.48744 1.45885 1.11317 1.04172 1.77211 1.20960 0.93819 0.82734 1.04677 1.20307 0.89476 0.82859 0.75914 1.90717 1.16685 1.83714 1.50057 1.48433 1.08211 1.05175 1.73592 1.22176 0.82125 0.96051 1.02616 1.22646 0.98094 0.93797 1.02442 1.22808 0.94778 0.98572 1.01114 1.22270 0.94643 0.83515 1.01364 0.93027 0.96583 0.96588 0.93426 0.93434 0.91779 0.91774 0.88927 0.88914 0.75122 0.88523 0.88511 0.90696 0.90709 0.90227 0.89614 0.89521 0.90384 0.91174 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16 11 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 12 C -0.14 -1.92 5.70 -27.88 -0.16 -2.08 16 13 C 0.52 7.48 7.83 -10.98 -0.09 7.40 16 14 O -0.54 -9.68 15.98 5.56 0.09 -9.59 16 15 N -0.73 -8.53 5.53 -61.48 -0.34 -8.87 16 16 C 0.11 1.04 5.35 -5.20 -0.03 1.01 16 17 C 0.53 5.29 7.92 -10.98 -0.09 5.21 16 18 O -0.54 -7.05 15.92 5.55 0.09 -6.96 16 19 N -0.62 -4.60 3.33 -170.53 -0.57 -5.16 16 20 C 0.09 0.43 6.48 -3.07 -0.02 0.41 16 21 C -0.13 -0.38 6.95 -24.90 -0.17 -0.55 16 22 C -0.13 -0.45 7.08 -24.58 -0.17 -0.62 16 23 C 0.10 0.63 6.91 -2.53 -0.02 0.61 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.41 4.47 7.44 -40.82 -0.30 4.17 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 40 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -35.84 358.17 -8.61 -44.46 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -7.44 Total: -2.68 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.55 Total: -6.71 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: -0.17 Total: -41.08 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.18 Total: -16.55 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.84 -8.61 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324078539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.462 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds