Wall clock time and date at job start Tue Mar 31 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48501 * 109.46949 * 239.99656 * 3 2 1 5 5 H 1.48499 * 109.47367 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47219 * 119.99889 * 3 2 1 7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99489 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47296 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47301 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47302 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47011 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00023 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00003 * 180.02562 * 13 12 11 16 16 C 1.46491 * 120.00091 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.46957 * 179.97438 * 16 15 13 18 18 O 1.21283 * 120.00262 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72354 * 17 16 15 20 20 C 1.47021 * 125.64880 * 359.97385 * 19 17 16 21 21 C 1.54315 * 107.27662 * 180.96527 * 20 19 17 22 22 C 1.55159 * 102.86487 * 22.52300 * 21 20 19 23 23 C 1.47428 * 125.65051 * 180.27344 * 19 17 16 24 24 H 0.97009 * 119.99878 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47069 * 60.00068 * 9 7 2 26 26 H 1.09000 * 109.47667 * 300.00256 * 9 7 2 27 27 H 1.09004 * 109.47038 * 60.00010 * 10 9 7 28 28 H 1.08994 * 109.47249 * 300.00006 * 10 9 7 29 29 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 30 30 H 1.09000 * 109.47665 * 300.00218 * 11 10 9 31 31 H 1.08998 * 109.46547 * 60.00631 * 12 11 10 32 32 H 1.08994 * 109.47099 * 300.00442 * 12 11 10 33 33 H 0.97003 * 119.99349 * 0.02562 * 15 13 12 34 34 H 1.09004 * 109.47166 * 60.00164 * 16 15 13 35 35 H 1.08994 * 109.47507 * 299.99870 * 16 15 13 36 36 H 1.08998 * 109.88109 * 300.51046 * 20 19 17 37 37 H 1.09001 * 109.88624 * 61.67549 * 20 19 17 38 38 H 1.09000 * 110.92562 * 264.10677 * 21 20 19 39 39 H 1.09003 * 110.59336 * 140.78334 * 21 20 19 40 40 H 1.08994 * 111.00670 * 206.22889 * 22 21 20 41 41 H 1.09000 * 110.99915 * 82.37681 * 22 21 20 42 42 H 1.08994 * 110.37091 * 274.68026 * 23 19 17 43 43 H 1.09002 * 110.36001 * 36.89286 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0018 13 6 1.7208 -7.4551 0.0018 14 8 0.5080 -7.4550 0.0009 15 7 2.3946 -8.6224 0.0029 16 6 1.6621 -9.8910 0.0023 17 6 2.6414 -11.0365 0.0031 18 8 3.8338 -10.8149 0.0045 19 7 2.1921 -12.3071 0.0083 20 6 0.7801 -12.7167 0.0143 21 6 0.7505 -14.2593 0.0438 22 6 2.1401 -14.6203 0.6321 23 6 3.0351 -13.5166 0.0154 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8902 27 1 2.8711 -3.6040 0.8923 28 1 2.8725 -3.6048 -0.8876 29 1 0.8545 -5.0449 -0.8895 30 1 0.8524 -5.0447 0.8904 31 1 3.1002 -6.0924 0.8923 32 1 3.1017 -6.0922 -0.8876 33 1 3.3646 -8.6223 0.0040 34 1 1.0365 -9.9489 -0.8884 35 1 1.0344 -9.9486 0.8915 36 1 0.2821 -12.3175 0.8978 37 1 0.2855 -12.3556 -0.8875 38 1 0.6399 -14.6658 -0.9615 39 1 -0.0482 -14.6150 0.6948 40 1 2.4581 -15.6099 0.3041 41 1 2.1326 -14.5547 1.7201 42 1 3.3221 -13.7850 -1.0012 43 1 3.9215 -13.3575 0.6296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324078539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:05 Heat of formation + Delta-G solvation = -121.426092 kcal Electronic energy + Delta-G solvation = -21087.077036 eV Core-core repulsion = 17744.144396 eV Total energy + Delta-G solvation = -3342.932640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.46408 -40.50222 -38.51251 -36.67533 -35.55017 -34.60220 -32.94618 -31.64979 -30.21830 -28.94160 -27.10031 -24.66386 -23.79522 -22.10527 -21.77469 -21.39992 -20.48779 -18.61518 -18.41168 -17.82759 -17.53202 -17.09655 -16.91428 -16.51256 -16.22832 -15.71043 -15.33238 -14.66104 -14.52565 -14.45347 -14.36670 -14.09299 -13.73241 -13.58350 -13.45718 -13.27130 -13.23603 -12.78260 -12.37068 -12.22110 -12.15904 -12.14792 -12.12025 -11.61049 -11.36126 -11.35908 -11.22015 -11.18999 -10.84972 -10.53225 -10.28616 -9.80279 -8.17594 -6.29580 1.32863 1.40706 1.44782 1.52587 1.58466 1.59587 2.29211 2.42987 3.14790 3.24829 3.64547 3.75952 3.84027 4.02274 4.06536 4.14850 4.22112 4.26176 4.30705 4.46127 4.63714 4.66391 4.68972 4.82800 4.85306 4.89475 4.92526 4.97197 5.10312 5.17377 5.20793 5.23566 5.34014 5.35453 5.40261 5.58174 5.79822 5.89383 6.26815 6.27653 6.42593 6.85465 6.88413 7.15572 7.39652 8.94316 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.061128 B = 0.002045 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.946328 B =13688.352361 C =14072.644860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.007 4.007 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.019 3.981 10 C -0.098 4.098 11 C -0.094 4.094 12 C -0.129 4.129 13 C 0.519 3.481 14 O -0.579 6.579 15 N -0.717 5.717 16 C 0.106 3.894 17 C 0.525 3.475 18 O -0.573 6.573 19 N -0.616 5.616 20 C 0.083 3.917 21 C -0.125 4.125 22 C -0.126 4.126 23 C 0.096 3.904 24 H 0.263 0.737 25 H -0.014 1.014 26 H -0.014 1.014 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.417 0.583 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 -33.940 0.320 34.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.018 4.018 10 C -0.135 4.135 11 C -0.133 4.133 12 C -0.169 4.169 13 C 0.307 3.693 14 O -0.458 6.458 15 N -0.373 5.373 16 C -0.021 4.021 17 C 0.313 3.687 18 O -0.454 6.454 19 N -0.350 5.350 20 C -0.039 4.039 21 C -0.163 4.163 22 C -0.164 4.164 23 C -0.026 4.026 24 H 0.072 0.928 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.256 0.744 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.405 -33.674 0.315 33.962 hybrid contribution 0.352 1.067 -0.026 1.124 sum 4.757 -32.607 0.289 32.954 Atomic orbital electron populations 1.70125 1.07986 1.27786 1.51786 1.26086 0.95821 1.03688 0.94808 0.85437 0.78173 0.77759 0.79277 1.19011 1.20972 1.18999 1.21731 0.93719 0.92308 1.50367 0.91707 1.19054 0.94675 0.93654 0.94445 1.21462 0.97890 0.92883 1.01269 1.21245 0.97380 0.93279 1.01359 1.21676 0.99103 0.89399 1.06691 1.21121 0.87760 0.86105 0.74303 1.90693 1.15846 1.88220 1.51059 1.45754 1.11662 1.04180 1.75692 1.21063 0.93752 0.81883 1.05435 1.20278 0.88833 0.83707 0.75863 1.90694 1.17988 1.84396 1.52279 1.48555 1.09845 1.04748 1.71813 1.22452 0.80464 0.97643 1.03308 1.22669 0.98144 0.92164 1.03324 1.22796 0.94377 0.98313 1.00935 1.22445 0.94709 0.83843 1.01607 0.92849 0.99545 0.99549 0.92172 0.92182 0.93486 0.93480 0.86502 0.86492 0.74395 0.87745 0.87733 0.90052 0.90013 0.89377 0.88050 0.87724 0.90444 0.90833 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.31 13.29 21.45 0.28 -59.03 16 2 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 3 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 11 C -0.09 -3.47 4.50 30.59 0.14 -3.33 16 12 C -0.13 -3.40 5.70 29.85 0.17 -3.23 16 13 C 0.52 14.58 7.83 87.66 0.69 15.27 16 14 O -0.58 -20.90 15.98 -3.02 -0.05 -20.95 16 15 N -0.72 -15.99 5.53 -466.81 -2.58 -18.57 16 16 C 0.11 1.99 5.35 85.64 0.46 2.45 16 17 C 0.52 10.25 7.92 87.66 0.69 10.94 16 18 O -0.57 -15.02 15.92 -3.04 -0.05 -15.07 16 19 N -0.62 -8.54 3.33 -811.81 -2.70 -11.24 16 20 C 0.08 0.62 6.48 86.73 0.56 1.19 16 21 C -0.13 -0.40 6.95 31.78 0.22 -0.18 16 22 C -0.13 -0.58 7.08 31.99 0.23 -0.36 16 23 C 0.10 1.06 6.91 86.85 0.60 1.66 16 24 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 25 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.86 8.10 -2.38 -0.02 1.84 16 30 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 31 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.42 8.51 7.44 -92.71 -0.69 7.82 16 34 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.08 0.39 8.14 -2.39 -0.02 0.38 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.92 8.03 -2.39 -0.02 0.91 16 Total: -1.00 -79.07 358.17 1.98 -77.09 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.29 Total: 10.38 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 4.76 Total: -9.99 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -5.00 Total: -88.83 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.10 Total: -36.02 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -79.07 1.98 -77.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324078539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.332 kcal (2) G-P(sol) polarization free energy of solvation -79.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds