Wall clock time and date at job start Tue Mar 31 2020 06:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99605 * 2 1 4 4 H 1.48501 * 109.47303 * 269.99922 * 3 2 1 5 5 H 1.48495 * 109.47428 * 29.99792 * 3 2 1 6 6 H 1.48499 * 109.46985 * 149.99823 * 3 2 1 7 7 C 1.37870 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00213 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47276 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46813 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46972 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46946 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00166 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99585 * 179.97438 * 13 12 11 16 16 C 1.46926 * 120.62730 * 180.02562 * 15 13 12 17 17 C 1.53191 * 108.89109 * 126.46248 * 16 15 13 18 18 C 1.53044 * 109.31440 * 54.56430 * 17 16 15 19 19 C 1.50696 * 109.46055 * 178.62547 * 18 17 16 20 20 N 1.34771 * 120.00356 * 179.97438 * 19 18 17 21 21 O 1.21286 * 120.00016 * 0.02562 * 19 18 17 22 22 C 1.53040 * 109.53662 * 298.63203 * 18 17 16 23 23 C 1.46957 * 120.65462 * 359.81587 * 15 13 12 24 24 H 0.96992 * 119.99987 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46941 * 59.99511 * 9 7 2 26 26 H 1.09002 * 109.46660 * 299.99801 * 9 7 2 27 27 H 1.09002 * 109.46947 * 59.99787 * 10 9 7 28 28 H 1.08999 * 109.46991 * 300.00066 * 10 9 7 29 29 H 1.08997 * 109.47213 * 59.99827 * 11 10 9 30 30 H 1.09002 * 109.46850 * 299.99834 * 11 10 9 31 31 H 1.09002 * 109.47153 * 59.99514 * 12 11 10 32 32 H 1.08999 * 109.46626 * 299.99890 * 12 11 10 33 33 H 1.09002 * 109.58861 * 6.60251 * 16 15 13 34 34 H 1.08996 * 109.58519 * 246.32142 * 16 15 13 35 35 H 1.09003 * 109.49294 * 174.51508 * 17 16 15 36 36 H 1.09001 * 109.49969 * 294.57596 * 17 16 15 37 37 H 1.08994 * 109.45986 * 58.65006 * 18 17 16 38 38 H 0.97007 * 119.99812 * 0.02562 * 20 19 18 39 39 H 0.96996 * 120.00655 * 179.97438 * 20 19 18 40 40 H 1.08995 * 109.49643 * 181.31582 * 22 18 17 41 41 H 1.08996 * 109.49892 * 301.41776 * 22 18 17 42 42 H 1.09001 * 109.46843 * 113.75468 * 23 15 13 43 43 H 1.08997 * 109.71602 * 353.46961 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6621 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4748 -6.1500 0.0005 13 6 1.7213 -7.4551 0.0005 14 8 0.5085 -7.4551 0.0005 15 7 2.3953 -8.6223 0.0005 16 6 1.6747 -9.9027 0.0000 17 6 2.1826 -10.7571 -1.1657 18 6 3.7040 -10.8923 -1.0690 19 6 4.2035 -11.7602 -2.1951 20 7 5.5207 -12.0197 -2.3126 21 8 3.4202 -12.2245 -2.9962 22 6 4.3481 -9.5076 -1.1686 23 6 3.8647 -8.6390 -0.0035 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8722 -3.6042 0.8905 28 1 2.8721 -3.6042 -0.8894 29 1 0.8541 -5.0446 -0.8903 30 1 0.8536 -5.0451 0.8897 31 1 3.1009 -6.0922 0.8909 32 1 3.1020 -6.0921 -0.8890 33 1 0.6065 -9.7209 -0.1185 34 1 1.8546 -10.4236 0.9404 35 1 1.7258 -11.7457 -1.1182 36 1 1.9185 -10.2793 -2.1091 37 1 3.9681 -11.3478 -0.1147 38 1 6.1473 -11.6481 -1.6721 39 1 5.8423 -12.5787 -3.0372 40 1 5.4326 -9.6068 -1.1232 41 1 4.0641 -9.0412 -2.1119 42 1 4.2259 -9.0555 0.9368 43 1 4.2437 -7.6240 -0.1229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324292828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:38 Heat of formation + Delta-G solvation = -109.314629 kcal Electronic energy + Delta-G solvation = -21825.261312 eV Core-core repulsion = 18482.853864 eV Total energy + Delta-G solvation = -3342.407448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74908 -39.63284 -37.27184 -34.91927 -34.24217 -33.15687 -32.56310 -31.49898 -29.62448 -26.75493 -25.40154 -23.65292 -22.72475 -21.71135 -20.42622 -19.98014 -19.04698 -18.00227 -17.15542 -16.80607 -16.17277 -15.92102 -15.82974 -15.34598 -14.66449 -14.49569 -14.45534 -14.25975 -13.77493 -13.46449 -13.12045 -12.85701 -12.55429 -12.27312 -12.05879 -11.73011 -11.65270 -11.51069 -11.19666 -11.07466 -10.97486 -10.52608 -10.49299 -10.39061 -10.27903 -10.14410 -9.73984 -9.59804 -9.20738 -8.96750 -8.83531 -8.29312 -5.94009 -3.96605 2.20202 2.68736 2.83368 3.08349 3.34576 3.40605 3.43561 4.13626 4.22515 4.31879 4.49318 4.58879 4.67247 4.85940 4.88675 5.03885 5.14734 5.23918 5.26455 5.34434 5.38935 5.41452 5.47785 5.62298 5.68291 5.86834 5.93369 6.14887 6.28217 6.31301 6.36974 6.56647 6.85004 6.85499 7.03047 7.20606 7.29553 7.75480 7.82030 7.91753 8.07562 8.21828 8.49078 9.11176 9.66959 11.17345 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033555 B = 0.002530 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.253893 B =11065.315855 C =11528.833792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.515 3.485 14 O -0.533 6.533 15 N -0.622 5.622 16 C 0.110 3.890 17 C -0.115 4.115 18 C -0.108 4.108 19 C 0.521 3.479 20 N -0.857 5.857 21 O -0.540 6.540 22 C -0.128 4.128 23 C 0.109 3.891 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.401 0.599 39 H 0.401 0.599 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.103 -25.669 0.002 29.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.305 3.695 14 O -0.408 6.408 15 N -0.358 5.358 16 C -0.012 4.012 17 C -0.153 4.153 18 C -0.129 4.129 19 C 0.306 3.694 20 N -0.420 5.420 21 O -0.416 6.416 22 C -0.166 4.166 23 C -0.014 4.014 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.230 0.770 39 H 0.231 0.769 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.616 -25.744 -0.407 28.672 hybrid contribution 1.137 0.769 -0.021 1.372 sum 13.752 -24.975 -0.428 28.514 Atomic orbital electron populations 1.69976 1.06043 1.26500 1.50940 1.25046 0.94843 0.99228 0.95494 0.86611 0.79806 0.83626 0.78036 1.20720 1.21262 1.19940 1.21280 0.92956 0.91206 1.50373 0.92776 1.19099 0.94075 0.91268 0.97330 1.21643 0.99061 0.94014 0.99996 1.21468 0.97046 0.92699 1.02992 1.21825 1.00135 0.92091 1.03700 1.21119 0.88238 0.85380 0.74811 1.90700 1.14186 1.87157 1.48782 1.48224 1.06510 1.06059 1.74976 1.21573 0.98734 0.83373 0.97560 1.21755 0.92602 1.01119 0.99842 1.21352 0.97976 0.95697 0.97910 1.20689 0.82290 0.80309 0.86132 1.43912 1.08363 1.55443 1.34331 1.90768 1.55313 1.52016 1.43497 1.21949 1.00234 0.93924 1.00532 1.21704 0.80082 1.01700 0.97962 0.93045 0.96597 0.96575 0.93498 0.93527 0.91803 0.91789 0.89167 0.89208 0.88484 0.91618 0.89950 0.90576 0.88119 0.77028 0.76864 0.90123 0.90480 0.91032 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 11 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.14 -1.81 4.05 -27.88 -0.11 -1.92 16 13 C 0.52 7.25 7.70 -10.98 -0.08 7.17 16 14 O -0.53 -9.82 15.39 5.56 0.09 -9.74 16 15 N -0.62 -6.33 2.98 -172.77 -0.51 -6.85 16 16 C 0.11 1.03 6.43 -3.71 -0.02 1.01 16 17 C -0.11 -0.98 4.65 -26.61 -0.12 -1.10 16 18 C -0.11 -0.65 2.49 -91.73 -0.23 -0.88 16 19 C 0.52 4.03 7.43 -10.99 -0.08 3.95 16 20 N -0.86 -3.27 8.76 31.22 0.27 -2.99 16 21 O -0.54 -6.80 16.82 5.55 0.09 -6.71 16 22 C -0.13 -0.66 5.27 -26.63 -0.14 -0.80 16 23 C 0.11 0.68 6.33 -3.71 -0.02 0.65 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.09 1.00 7.95 -51.93 -0.41 0.59 16 32 H 0.09 1.01 7.69 -51.93 -0.40 0.61 16 33 H 0.10 1.13 7.01 -51.93 -0.36 0.76 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 36 H 0.08 0.83 8.13 -51.93 -0.42 0.40 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.40 0.31 8.22 -40.82 -0.34 -0.02 16 39 H 0.40 1.34 8.93 -40.82 -0.36 0.97 16 40 H 0.08 0.19 7.52 -51.93 -0.39 -0.20 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.10 0.55 5.95 -51.93 -0.31 0.24 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -37.34 348.48 -7.90 -45.24 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -7.18 Total: -4.48 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.63 Total: -9.72 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.49 Total: -36.74 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.18 Total: -16.45 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.34 -7.90 -45.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324292828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.073 kcal (2) G-P(sol) polarization free energy of solvation -37.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds