Wall clock time and date at job start Tue Mar 31 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99843 * 2 1 4 4 H 1.48498 * 109.47153 * 270.00194 * 3 2 1 5 5 H 1.48505 * 109.47054 * 30.00150 * 3 2 1 6 6 H 1.48497 * 109.47565 * 149.99946 * 3 2 1 7 7 C 1.37874 * 120.00616 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00481 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99769 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.29077 * 60.67219 * 9 7 2 11 11 C 1.54259 * 110.32345 * 298.54553 * 9 7 2 12 12 C 1.54385 * 105.06207 * 241.00170 * 11 9 7 13 13 N 1.48563 * 104.69592 * 336.08827 * 12 11 9 14 14 C 1.46895 * 110.99803 * 159.09938 * 13 12 11 15 15 C 1.52999 * 109.47165 * 75.62025 * 14 13 12 16 16 H 1.09005 * 108.56556 * 307.40749 * 15 14 13 17 17 C 1.51777 * 108.61981 * 189.60908 * 15 14 13 18 18 C 1.52939 * 110.88991 * 171.89033 * 17 15 14 19 19 N 1.47194 * 108.69113 * 86.44997 * 18 17 15 20 20 C 1.33371 * 120.43133 * 288.05074 * 19 18 17 21 21 O 1.21276 * 119.89522 * 180.29921 * 20 19 18 22 22 C 1.51426 * 120.21128 * 0.27636 * 20 19 18 23 23 C 1.51787 * 108.61808 * 65.34408 * 15 14 13 24 24 C 1.48851 * 104.07616 * 39.46693 * 13 12 11 25 25 H 0.96999 * 120.00321 * 359.97438 * 1 2 3 26 26 H 0.96701 * 113.99671 * 299.32852 * 10 9 7 27 27 H 1.09005 * 110.32433 * 122.10377 * 11 9 7 28 28 H 1.09000 * 110.32810 * 359.89813 * 11 9 7 29 29 H 1.08997 * 110.41212 * 94.92691 * 12 11 9 30 30 H 1.09002 * 110.40849 * 217.25120 * 12 11 9 31 31 H 1.08993 * 109.47130 * 195.62062 * 14 13 12 32 32 H 1.09004 * 109.47408 * 315.61982 * 14 13 12 33 33 H 1.08999 * 109.19456 * 292.24596 * 17 15 14 34 34 H 1.09001 * 109.19409 * 51.51724 * 17 15 14 35 35 H 1.08995 * 109.59299 * 326.68743 * 18 17 15 36 36 H 1.09003 * 109.72929 * 206.29017 * 18 17 15 37 37 H 0.97002 * 119.78316 * 108.02775 * 19 18 17 38 38 H 1.09000 * 109.63592 * 311.51789 * 22 20 19 39 39 H 1.09006 * 109.63330 * 190.91842 * 22 20 19 40 40 H 1.08995 * 109.22298 * 308.26462 * 23 15 14 41 41 H 1.09003 * 109.22266 * 67.64945 * 23 15 14 42 42 H 1.08998 * 110.39460 * 201.74874 * 24 13 12 43 43 H 1.09005 * 110.49445 * 79.38731 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.4344 -2.5998 -1.1688 11 6 0.3852 -2.6178 1.2705 12 6 0.9172 -3.8683 2.0031 13 7 1.5521 -4.6872 0.9384 14 6 2.5157 -5.6375 1.5095 15 6 1.7619 -6.7972 2.1636 16 1 1.0290 -6.3868 2.8584 17 6 2.7523 -7.6373 2.9490 18 6 2.0286 -8.6932 3.7860 19 7 1.8104 -9.8871 2.9531 20 6 0.9072 -9.8704 1.9720 21 8 0.7315 -10.8614 1.2952 22 6 0.0999 -8.6183 1.7006 23 6 1.0261 -7.5680 1.0827 24 6 2.2335 -3.6878 0.0710 25 1 -0.4850 0.8400 0.0004 26 1 -0.2325 -1.9036 -1.2435 27 1 -0.6629 -2.7528 1.0032 28 1 0.5064 -1.7329 1.8953 29 1 1.6539 -3.5841 2.7543 30 1 0.0959 -4.4162 2.4653 31 1 3.1588 -6.0226 0.7182 32 1 3.1247 -5.1315 2.2587 33 1 3.4308 -8.1335 2.2551 34 1 3.3277 -6.9888 3.6096 35 1 1.0685 -8.2999 4.1200 36 1 2.6367 -8.9571 4.6513 37 1 2.3271 -10.6911 3.1188 38 1 -0.3123 -8.2385 2.6354 39 1 -0.7088 -8.8472 1.0065 40 1 0.4341 -6.8736 0.4866 41 1 1.7520 -8.0648 0.4389 42 1 2.4034 -4.1010 -0.9233 43 1 3.1772 -3.3749 0.5180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326018546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:45 Heat of formation + Delta-G solvation = -95.433343 kcal Electronic energy + Delta-G solvation = -23169.071630 eV Core-core repulsion = 19827.266120 eV Total energy + Delta-G solvation = -3341.805510 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.31888 -38.54968 -36.96335 -35.06907 -33.67841 -32.12195 -31.44464 -29.81659 -27.99843 -27.09208 -24.68134 -24.23967 -22.89763 -20.77660 -20.14363 -19.59564 -19.21196 -17.35580 -17.04790 -16.77088 -15.49328 -15.24976 -14.89837 -14.54752 -14.33172 -14.15254 -13.88858 -13.52133 -13.23877 -13.01520 -12.87313 -12.52950 -12.29178 -11.95656 -11.73556 -11.54790 -11.30191 -11.17443 -11.09373 -10.66547 -10.63732 -10.59144 -10.47185 -10.33260 -10.28696 -9.82707 -9.78379 -9.28501 -9.10950 -8.59371 -8.11418 -7.80512 -6.21769 -4.30619 2.60291 3.17643 3.20713 3.28103 3.30507 4.26092 4.37514 4.46693 4.65736 4.68408 4.88274 5.05936 5.11426 5.17956 5.27955 5.35640 5.52820 5.61205 5.63708 5.73786 5.79291 5.90409 5.95685 5.98339 6.05616 6.12339 6.19717 6.37608 6.44953 6.47390 6.63891 6.65951 6.94350 7.03725 7.11846 7.35857 7.49347 7.55464 7.68703 7.80072 8.14904 8.20460 8.72423 9.38447 9.56997 10.84752 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038972 B = 0.003573 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.294059 B = 7835.659240 C = 8108.353454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.059 0.941 9 C 0.253 3.747 10 O -0.586 6.586 11 C -0.119 4.119 12 C 0.033 3.967 13 N -0.508 5.508 14 C 0.046 3.954 15 C -0.082 4.082 16 H 0.072 0.928 17 C -0.138 4.138 18 C 0.110 3.890 19 N -0.727 5.727 20 C 0.519 3.481 21 O -0.559 6.559 22 C -0.139 4.139 23 C -0.101 4.101 24 C 0.051 3.949 25 H 0.267 0.733 26 H 0.378 0.622 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.397 0.603 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 -12.667 9.422 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.077 0.923 9 C 0.213 3.787 10 O -0.394 6.394 11 C -0.158 4.158 12 C -0.095 4.095 13 N -0.232 5.232 14 C -0.083 4.083 15 C -0.101 4.101 16 H 0.090 0.910 17 C -0.177 4.177 18 C -0.014 4.014 19 N -0.379 5.379 20 C 0.307 3.693 21 O -0.438 6.438 22 C -0.179 4.179 23 C -0.138 4.138 24 C -0.076 4.076 25 H 0.077 0.923 26 H 0.228 0.772 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.232 0.768 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.802 -13.720 8.630 16.449 hybrid contribution 1.059 1.727 0.841 2.194 sum 3.861 -11.993 9.471 15.762 Atomic orbital electron populations 1.69704 1.05875 1.27399 1.50345 1.24989 0.94970 0.99343 0.93894 0.86508 0.79795 0.82869 0.78306 1.20445 1.21096 1.19911 1.21722 0.93470 0.90947 1.51540 0.92315 1.19205 0.86667 0.90488 0.82348 1.86139 1.51905 1.55445 1.45924 1.22841 0.99355 0.94563 0.99066 1.23157 0.97740 0.95182 0.93444 1.65423 1.26941 1.14598 1.16205 1.22328 0.94152 0.93887 0.97942 1.20763 0.97225 0.95187 0.96945 0.91006 1.21876 0.98707 0.97664 0.99422 1.21763 1.01245 0.85405 0.92999 1.45988 1.41001 1.16337 1.34553 1.20780 0.79810 0.89876 0.78880 1.90733 1.68066 1.36372 1.48592 1.22037 0.98998 0.93529 1.03298 1.21212 0.98310 0.96465 0.97860 1.23095 0.95841 0.92166 0.96528 0.92332 0.77181 0.92740 0.91212 0.95036 0.91957 0.91481 0.94907 0.91182 0.90560 0.90442 0.89679 0.76779 0.89472 0.88584 0.88364 0.92248 0.91070 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.55 10.81 55.43 0.60 -22.95 16 2 C 0.07 1.83 5.02 -17.82 -0.09 1.74 16 3 Si 0.90 20.34 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.19 8.08 -34.44 -0.28 -14.47 16 8 H 0.06 1.54 7.58 -52.49 -0.40 1.15 16 9 C 0.25 6.18 1.05 -90.39 -0.10 6.08 16 10 O -0.59 -15.31 12.94 -35.23 -0.46 -15.77 16 11 C -0.12 -2.69 5.55 -25.35 -0.14 -2.83 16 12 C 0.03 0.59 5.91 -2.18 -0.01 0.58 16 13 N -0.51 -9.06 4.59 -229.72 -1.05 -10.11 16 14 C 0.05 0.64 4.16 -3.83 -0.02 0.62 16 15 C -0.08 -0.90 1.80 -91.86 -0.17 -1.07 16 16 H 0.07 0.80 6.91 -51.93 -0.36 0.44 16 17 C -0.14 -1.15 4.98 -27.38 -0.14 -1.28 16 18 C 0.11 0.74 6.46 -3.69 -0.02 0.72 16 19 N -0.73 -6.50 5.27 -59.93 -0.32 -6.82 16 20 C 0.52 6.41 7.06 -11.25 -0.08 6.33 16 21 O -0.56 -9.30 17.92 5.56 0.10 -9.20 16 22 C -0.14 -1.52 5.57 -27.49 -0.15 -1.67 16 23 C -0.10 -1.21 4.89 -27.31 -0.13 -1.35 16 24 C 0.05 1.08 5.74 -2.02 -0.01 1.06 16 25 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 26 H 0.38 10.01 7.32 45.56 0.33 10.35 16 27 H 0.05 1.27 7.98 -51.93 -0.41 0.85 16 28 H 0.07 1.69 7.24 -51.93 -0.38 1.32 16 29 H 0.03 0.55 7.74 -51.93 -0.40 0.15 16 30 H 0.06 1.02 7.68 -51.93 -0.40 0.62 16 31 H 0.07 0.93 8.07 -51.93 -0.42 0.52 16 32 H 0.03 0.45 7.58 -51.93 -0.39 0.06 16 33 H 0.07 0.63 8.05 -51.93 -0.42 0.22 16 34 H 0.08 0.57 7.98 -51.93 -0.41 0.15 16 35 H 0.08 0.50 6.70 -51.93 -0.35 0.15 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.40 3.10 8.91 -40.82 -0.36 2.73 16 38 H 0.09 0.80 6.77 -51.93 -0.35 0.45 16 39 H 0.10 1.09 8.13 -51.93 -0.42 0.67 16 40 H 0.10 1.40 7.44 -51.93 -0.39 1.01 16 41 H 0.06 0.76 7.86 -51.93 -0.41 0.35 16 42 H 0.07 1.53 8.08 -51.93 -0.42 1.12 16 43 H 0.04 0.90 7.57 -51.93 -0.39 0.51 16 LS Contribution 330.74 15.07 4.98 4.98 Total: -1.00 -29.82 330.74 -8.81 -38.63 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.31 Total: 11.45 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.34 Total: -5.53 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.77 Total: -39.88 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.36 Total: -24.97 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.82 -8.81 -38.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326018546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.803 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds