Wall clock time and date at job start Tue Mar 31 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00192 * 2 1 4 4 H 1.48511 * 109.47168 * 274.40428 * 3 2 1 5 5 H 1.48500 * 109.47027 * 34.40047 * 3 2 1 6 6 H 1.48494 * 109.47508 * 154.39857 * 3 2 1 7 7 C 1.37877 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99544 * 355.07264 * 7 2 1 9 9 C 1.50698 * 120.00350 * 175.07667 * 7 2 1 10 10 O 1.42900 * 110.35275 * 67.20031 * 9 7 2 11 11 C 1.54597 * 110.31304 * 189.34617 * 9 7 2 12 12 C 1.54932 * 102.92376 * 140.86803 * 11 9 7 13 13 N 1.48532 * 103.22840 * 322.59063 * 12 11 9 14 14 C 1.46904 * 110.99799 * 159.72018 * 13 12 11 15 15 C 1.53000 * 109.47112 * 58.30410 * 14 13 12 16 16 H 1.08994 * 108.56527 * 306.10120 * 15 14 13 17 17 C 1.51783 * 108.61232 * 188.30103 * 15 14 13 18 18 C 1.52949 * 110.88225 * 171.88999 * 17 15 14 19 19 N 1.47186 * 108.69104 * 86.44998 * 18 17 15 20 20 C 1.33375 * 120.43400 * 288.05435 * 19 18 17 21 21 O 1.21281 * 119.89215 * 180.25429 * 20 19 18 22 22 C 1.51423 * 120.21217 * 0.27145 * 20 19 18 23 23 C 1.51786 * 108.61572 * 64.04289 * 15 14 13 24 24 C 1.47894 * 105.82246 * 39.20362 * 13 12 11 25 25 H 0.96993 * 120.00251 * 359.97438 * 1 2 3 26 26 H 0.96701 * 113.99932 * 57.86563 * 10 9 7 27 27 H 1.08993 * 110.72405 * 259.23151 * 11 9 7 28 28 H 1.09009 * 110.71708 * 22.33340 * 11 9 7 29 29 H 1.08996 * 110.66948 * 204.14933 * 12 11 9 30 30 H 1.08997 * 110.66529 * 81.02494 * 12 11 9 31 31 H 1.08996 * 109.47146 * 298.30129 * 14 13 12 32 32 H 1.09006 * 109.46493 * 178.29938 * 14 13 12 33 33 H 1.08998 * 109.19652 * 292.24262 * 17 15 14 34 34 H 1.08996 * 109.19597 * 51.52205 * 17 15 14 35 35 H 1.08996 * 109.59229 * 326.68736 * 18 17 15 36 36 H 1.09003 * 109.72020 * 206.29609 * 18 17 15 37 37 H 0.97002 * 119.77949 * 108.02191 * 19 18 17 38 38 H 1.09005 * 109.63354 * 311.52208 * 22 20 19 39 39 H 1.09001 * 109.63147 * 190.92366 * 22 20 19 40 40 H 1.09000 * 109.22455 * 308.25593 * 23 15 14 41 41 H 1.09000 * 109.23003 * 67.60725 * 23 15 14 42 42 H 1.09007 * 109.91908 * 94.02520 * 24 13 12 43 43 H 1.09006 * 109.92052 * 215.31842 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4035 2.1002 -1.3960 5 1 1.4962 2.6240 0.7910 6 1 3.5900 1.4151 0.6049 7 6 2.0045 -1.1940 -0.0005 8 1 1.4675 -2.1276 0.0794 9 6 3.5073 -1.1964 -0.1125 10 8 4.0939 -0.6260 1.0590 11 6 4.0273 -2.6365 -0.3263 12 6 5.1734 -2.4427 -1.3505 13 7 4.6529 -1.3777 -2.2456 14 6 5.7467 -0.7210 -2.9738 15 6 6.5144 -1.7632 -3.7895 16 1 6.8258 -2.5661 -3.1214 17 6 7.7560 -1.1081 -4.3667 18 6 8.6653 -2.1475 -5.0241 19 7 8.2285 -2.3434 -6.4159 20 6 7.0929 -2.9899 -6.6829 21 8 6.7446 -3.1499 -7.8336 22 6 6.2368 -3.5244 -5.5541 23 6 5.5818 -2.3402 -4.8389 24 6 3.9511 -0.4186 -1.3654 25 1 -0.4850 0.8400 0.0004 26 1 3.8498 -1.0754 1.8798 27 1 4.4095 -3.0510 0.6065 28 1 3.2430 -3.2728 -0.7367 29 1 5.3502 -3.3621 -1.9087 30 1 6.0845 -2.1138 -0.8507 31 1 6.4227 -0.2459 -2.2629 32 1 5.3351 0.0338 -3.6440 33 1 7.4584 -0.3701 -5.1116 34 1 8.3024 -0.6084 -3.5668 35 1 8.5939 -3.0905 -4.4821 36 1 9.6967 -1.7950 -5.0105 37 1 8.7699 -1.9997 -7.1437 38 1 6.8605 -4.0771 -4.8515 39 1 5.4656 -4.1802 -5.9582 40 1 4.6632 -2.6753 -4.3574 41 1 5.3420 -1.5678 -5.5696 42 1 4.6271 0.3881 -1.0815 43 1 3.0793 -0.0128 -1.8786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326018548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:51 Heat of formation + Delta-G solvation = -81.963707 kcal Electronic energy + Delta-G solvation = -23443.642210 eV Core-core repulsion = 20102.420787 eV Total energy + Delta-G solvation = -3341.221423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.40436 -38.90381 -37.11603 -35.27746 -33.78098 -32.37090 -31.54462 -30.15895 -28.44166 -27.27231 -24.45576 -24.27483 -23.14811 -21.19821 -20.23112 -19.71043 -19.34292 -17.39857 -17.04932 -16.91555 -15.67378 -15.53819 -15.04213 -14.57921 -14.52593 -14.30602 -13.91857 -13.68385 -13.30127 -13.13357 -12.92231 -12.73759 -12.49927 -12.27179 -11.90217 -11.74440 -11.63021 -11.49511 -11.10855 -10.89515 -10.75502 -10.64806 -10.54885 -10.29184 -10.03640 -10.01546 -9.83171 -9.31936 -8.96997 -8.64679 -8.39894 -7.90857 -6.16460 -4.25250 2.56078 3.13342 3.29569 3.41414 3.62991 4.24438 4.39953 4.44301 4.56849 4.59654 4.73935 5.04431 5.11403 5.13290 5.18124 5.28945 5.32220 5.41925 5.52299 5.54552 5.61752 5.76602 5.79916 5.87687 5.91810 5.94016 5.99054 6.15606 6.18531 6.31902 6.40256 6.51418 6.61803 6.66535 6.89154 7.07674 7.09211 7.39735 7.55735 7.61723 8.10908 8.27060 8.81975 8.96570 9.47669 10.94439 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027696 B = 0.004222 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.720834 B = 6630.155256 C = 6705.168900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.085 3.915 3 Si 0.864 3.136 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.224 1.224 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.211 3.789 10 O -0.583 6.583 11 C -0.135 4.135 12 C 0.037 3.963 13 N -0.508 5.508 14 C 0.047 3.953 15 C -0.087 4.087 16 H 0.073 0.927 17 C -0.138 4.138 18 C 0.111 3.889 19 N -0.727 5.727 20 C 0.519 3.481 21 O -0.558 6.558 22 C -0.138 4.138 23 C -0.103 4.103 24 C 0.047 3.953 25 H 0.265 0.735 26 H 0.363 0.637 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.397 0.603 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.034 0.966 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.170 -4.089 -6.347 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.119 4.119 3 Si 0.692 3.308 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.147 1.147 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.172 3.828 10 O -0.389 6.389 11 C -0.173 4.173 12 C -0.091 4.091 13 N -0.232 5.232 14 C -0.082 4.082 15 C -0.105 4.105 16 H 0.092 0.908 17 C -0.177 4.177 18 C -0.014 4.014 19 N -0.379 5.379 20 C 0.306 3.694 21 O -0.436 6.436 22 C -0.179 4.179 23 C -0.141 4.141 24 C -0.080 4.080 25 H 0.075 0.925 26 H 0.210 0.790 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.233 0.767 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.613 -3.950 -7.611 19.590 hybrid contribution 0.823 1.183 0.744 1.622 sum 18.436 -2.767 -6.867 19.867 Atomic orbital electron populations 1.69933 1.06631 1.27369 1.48676 1.24996 0.94553 0.99537 0.92843 0.87217 0.82990 0.82689 0.77946 1.21275 1.22388 1.14709 1.21347 0.88934 0.94858 1.53046 0.90588 1.19854 0.92722 0.87624 0.82614 1.86501 1.74854 1.60530 1.17057 1.23060 0.97067 0.99761 0.97447 1.23167 0.96708 0.95231 0.93952 1.64809 1.22598 1.10867 1.24954 1.22393 0.92648 0.96146 0.96973 1.20864 0.94234 0.98258 0.97185 0.90836 1.21877 0.96410 0.98488 1.00944 1.21753 0.98290 0.99744 0.81578 1.45986 1.24345 1.58356 1.09210 1.20764 0.81020 0.77006 0.90588 1.90741 1.71471 1.58719 1.22684 1.22037 0.99480 0.99863 0.96479 1.21237 0.99691 0.96026 0.97132 1.23195 0.97906 0.93784 0.93148 0.92530 0.79042 0.92280 0.90441 0.91107 0.94588 0.94945 0.91040 0.91044 0.90525 0.90464 0.89624 0.76724 0.89497 0.88489 0.88347 0.91936 0.94727 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 2 C 0.09 2.40 5.23 -17.82 -0.09 2.30 16 3 Si 0.86 21.43 23.99 -169.99 -4.08 17.35 16 4 H -0.29 -7.01 7.09 56.52 0.40 -6.61 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.22 -5.43 5.20 56.52 0.29 -5.14 16 7 C -0.54 -14.69 8.71 -34.44 -0.30 -14.99 16 8 H 0.08 2.23 7.88 -52.48 -0.41 1.81 16 9 C 0.21 4.73 0.84 -90.41 -0.08 4.66 16 10 O -0.58 -12.71 10.29 -35.23 -0.36 -13.07 16 11 C -0.14 -2.53 6.33 -24.87 -0.16 -2.69 16 12 C 0.04 0.59 5.32 -1.90 -0.01 0.58 16 13 N -0.51 -8.86 4.54 -230.45 -1.05 -9.91 16 14 C 0.05 0.66 4.15 -3.82 -0.02 0.64 16 15 C -0.09 -0.91 1.58 -91.85 -0.15 -1.06 16 16 H 0.07 0.74 6.24 -51.93 -0.32 0.41 16 17 C -0.14 -1.12 4.98 -27.38 -0.14 -1.25 16 18 C 0.11 0.70 6.46 -3.69 -0.02 0.68 16 19 N -0.73 -6.30 5.27 -59.93 -0.32 -6.61 16 20 C 0.52 6.24 7.06 -11.25 -0.08 6.16 16 21 O -0.56 -9.16 17.92 5.56 0.10 -9.06 16 22 C -0.14 -1.44 5.57 -27.50 -0.15 -1.59 16 23 C -0.10 -1.19 4.88 -27.32 -0.13 -1.32 16 24 C 0.05 1.01 4.13 -2.76 -0.01 1.00 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.36 6.85 9.07 45.56 0.41 7.27 16 27 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 28 H 0.08 1.53 7.74 -51.92 -0.40 1.13 16 29 H 0.07 0.96 7.51 -51.93 -0.39 0.57 16 30 H 0.04 0.55 8.01 -51.93 -0.42 0.14 16 31 H 0.03 0.45 7.84 -51.93 -0.41 0.05 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.08 0.56 8.00 -51.93 -0.42 0.14 16 35 H 0.08 0.45 6.70 -51.93 -0.35 0.11 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.40 3.02 8.91 -40.82 -0.36 2.66 16 38 H 0.09 0.72 6.77 -51.93 -0.35 0.37 16 39 H 0.10 1.04 8.13 -51.93 -0.42 0.62 16 40 H 0.10 1.31 7.40 -51.93 -0.38 0.93 16 41 H 0.06 0.79 7.86 -51.93 -0.41 0.38 16 42 H 0.03 0.75 6.65 -51.93 -0.35 0.40 16 43 H 0.09 2.15 5.88 -51.93 -0.31 1.84 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -33.11 321.96 -7.62 -40.74 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.21 Total: 8.54 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.34 Total: -6.88 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.59 Total: -42.46 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.26 Total: -22.13 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.08 Total: 17.35 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.11 -7.62 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326018548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.227 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds