Wall clock time and date at job start Tue Mar 31 2020 06:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99504 * 2 1 4 4 H 1.48503 * 109.47300 * 270.40695 * 3 2 1 5 5 H 1.48504 * 109.47408 * 30.41436 * 3 2 1 6 6 H 1.48501 * 109.46837 * 150.41169 * 3 2 1 7 7 C 1.37869 * 120.00583 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99844 * 352.22497 * 7 2 1 9 9 C 1.50697 * 120.00439 * 172.22447 * 7 2 1 10 10 O 1.42901 * 110.78272 * 329.20327 * 9 7 2 11 11 C 1.54595 * 110.72525 * 205.95560 * 9 7 2 12 12 C 1.53997 * 105.22771 * 219.73277 * 11 9 7 13 13 N 1.47901 * 107.05458 * 358.72222 * 12 11 9 14 14 C 1.46910 * 110.99767 * 145.84377 * 13 12 11 15 15 C 1.53003 * 109.46989 * 270.76043 * 14 13 12 16 16 H 1.08998 * 108.56682 * 306.52090 * 15 14 13 17 17 C 1.51780 * 108.61597 * 64.45763 * 15 14 13 18 18 C 1.52986 * 110.87913 * 188.12256 * 17 15 14 19 19 N 1.47190 * 108.66114 * 273.52608 * 18 17 15 20 20 C 1.33377 * 120.42450 * 71.95972 * 19 18 17 21 21 O 1.21282 * 119.88973 * 179.71362 * 20 19 18 22 22 C 1.51422 * 120.21852 * 359.73958 * 20 19 18 23 23 C 1.51792 * 108.61342 * 188.71667 * 15 14 13 24 24 C 1.48533 * 105.82097 * 25.33487 * 13 12 11 25 25 H 0.96994 * 120.00658 * 359.97438 * 1 2 3 26 26 H 0.96704 * 113.99678 * 301.00945 * 10 9 7 27 27 H 1.08996 * 110.31264 * 100.76665 * 11 9 7 28 28 H 1.09001 * 110.31141 * 338.69699 * 11 9 7 29 29 H 1.08998 * 109.91960 * 118.07454 * 12 11 9 30 30 H 1.08996 * 109.91680 * 239.37420 * 12 11 9 31 31 H 1.08996 * 109.46629 * 30.76135 * 14 13 12 32 32 H 1.09000 * 109.46950 * 150.76106 * 14 13 12 33 33 H 1.09009 * 109.19250 * 308.48180 * 17 15 14 34 34 H 1.08999 * 109.19394 * 67.75869 * 17 15 14 35 35 H 1.08996 * 109.60725 * 33.28350 * 18 17 15 36 36 H 1.09005 * 109.60138 * 153.78017 * 18 17 15 37 37 H 0.97003 * 119.78800 * 251.98335 * 19 18 17 38 38 H 1.09001 * 109.62999 * 48.44582 * 22 20 19 39 39 H 1.09000 * 109.63020 * 168.83683 * 22 20 19 40 40 H 1.09001 * 109.22079 * 292.40198 * 23 15 14 41 41 H 1.09003 * 109.22438 * 51.74583 * 23 15 14 42 42 H 1.08996 * 110.67159 * 79.22492 * 24 13 12 43 43 H 1.09000 * 110.66603 * 202.19146 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4879 2.0516 -1.4001 5 1 1.4508 2.6502 0.7088 6 1 3.5509 1.4378 0.6913 7 6 2.0046 -1.1939 -0.0005 8 1 1.4720 -2.1251 0.1256 9 6 3.5012 -1.1998 -0.1771 10 8 3.9200 -0.1027 -0.9914 11 6 3.9755 -2.5416 -0.7809 12 6 5.2820 -2.8795 -0.0390 13 7 5.5434 -1.7719 0.9056 14 6 6.1786 -2.2668 2.1344 15 6 5.0985 -2.6547 3.1462 16 1 4.4275 -1.8063 3.2800 17 6 4.3025 -3.8180 2.5832 18 6 3.0844 -4.1194 3.4583 19 7 3.4934 -5.0352 4.5356 20 6 4.2582 -4.6001 5.5379 21 8 4.5853 -5.3618 6.4232 22 6 4.7190 -3.1582 5.5745 23 6 5.7660 -2.9556 4.4760 24 6 4.2184 -1.1676 1.1977 25 1 -0.4851 0.8399 0.0004 26 1 3.5277 -0.0968 -1.8753 27 1 4.1647 -2.4303 -1.8485 28 1 3.2307 -3.3185 -0.6083 29 1 5.1670 -3.8150 0.5084 30 1 6.1030 -2.9615 -0.7513 31 1 6.7889 -3.1394 1.9017 32 1 6.8091 -1.4849 2.5577 33 1 3.9676 -3.5689 1.5762 34 1 4.9401 -4.7009 2.5399 35 1 2.7058 -3.1929 3.8899 36 1 2.3076 -4.5887 2.8546 37 1 3.2052 -5.9612 4.5162 38 1 3.8700 -2.4978 5.3978 39 1 5.1575 -2.9384 6.5479 40 1 6.3654 -3.8608 4.3799 41 1 6.4152 -2.1233 4.7481 42 1 3.6747 -1.7669 1.9279 43 1 4.3325 -0.1429 1.5514 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326018549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:54 Heat of formation + Delta-G solvation = -68.046670 kcal Electronic energy + Delta-G solvation = -24238.639502 eV Core-core repulsion = 20898.021567 eV Total energy + Delta-G solvation = -3340.617935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63551 -39.21753 -36.86267 -35.25208 -33.86169 -32.34267 -31.27641 -30.19996 -28.39512 -27.28431 -24.98697 -24.10573 -23.25853 -20.75494 -20.11906 -19.83724 -19.18041 -17.57579 -17.18327 -16.80616 -15.69704 -15.26044 -15.15003 -14.81625 -14.54525 -14.22269 -13.83008 -13.76215 -13.50950 -13.05579 -12.72043 -12.47393 -12.33184 -12.17100 -11.98824 -11.70955 -11.52820 -11.30607 -11.19305 -10.89658 -10.78183 -10.62456 -10.33309 -10.24597 -10.12496 -10.01124 -9.77479 -9.21801 -9.15964 -8.58371 -8.42508 -7.72302 -6.22376 -4.33341 2.64649 3.30400 3.43678 3.52774 3.72631 4.42413 4.48119 4.49745 4.60684 4.74158 4.84676 5.02562 5.15432 5.21859 5.28797 5.32711 5.36244 5.45229 5.50115 5.58049 5.64359 5.77186 5.81529 5.91341 5.92997 5.99310 6.05248 6.19158 6.23324 6.30963 6.34041 6.55257 6.62764 6.76302 6.79282 7.06156 7.23403 7.29158 7.57404 7.59808 8.10970 8.21623 8.68441 8.83458 9.40899 10.86432 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.005720 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.390854 B = 4894.100948 C = 5308.130275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.073 3.927 3 Si 0.941 3.059 4 H -0.293 1.293 5 H -0.327 1.327 6 H -0.263 1.263 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.227 3.773 10 O -0.556 6.556 11 C -0.149 4.149 12 C 0.029 3.971 13 N -0.515 5.515 14 C 0.048 3.952 15 C -0.132 4.132 16 H 0.090 0.910 17 C -0.151 4.151 18 C 0.107 3.893 19 N -0.722 5.722 20 C 0.519 3.481 21 O -0.564 6.564 22 C -0.140 4.140 23 C -0.101 4.101 24 C 0.031 3.969 25 H 0.266 0.734 26 H 0.366 0.634 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.397 0.603 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.645 -6.268 4.540 11.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.132 4.132 3 Si 0.776 3.224 4 H -0.221 1.221 5 H -0.259 1.259 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.095 0.905 9 C 0.186 3.814 10 O -0.363 6.363 11 C -0.188 4.188 12 C -0.099 4.099 13 N -0.237 5.237 14 C -0.080 4.080 15 C -0.152 4.152 16 H 0.108 0.892 17 C -0.189 4.189 18 C -0.017 4.017 19 N -0.373 5.373 20 C 0.306 3.694 21 O -0.444 6.444 22 C -0.180 4.180 23 C -0.140 4.140 24 C -0.096 4.096 25 H 0.075 0.925 26 H 0.213 0.787 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.233 0.767 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.431 -5.844 5.293 12.293 hybrid contribution -0.704 -0.271 -0.286 0.806 sum 8.728 -6.115 5.008 11.775 Atomic orbital electron populations 1.69968 1.06852 1.27759 1.47869 1.25146 0.94863 1.00503 0.92697 0.85807 0.78454 0.80180 0.77930 1.22102 1.25852 1.18895 1.21313 0.89276 0.95124 1.53522 0.90468 1.19998 0.92917 0.81748 0.86708 1.86221 1.72395 1.49355 1.28281 1.23099 0.95309 1.00703 0.99661 1.23057 0.98133 0.93019 0.95700 1.65043 1.22940 1.25454 1.10313 1.22426 0.96104 0.99320 0.90199 1.21612 0.99041 0.99279 0.95247 0.89151 1.22291 0.96890 0.98433 1.01275 1.21853 0.97034 0.94535 0.88232 1.46034 1.52149 1.14297 1.24841 1.20617 0.77201 0.90881 0.80655 1.90724 1.57401 1.58199 1.38031 1.22007 1.00994 0.93344 1.01704 1.21208 0.97120 1.02472 0.93175 1.24011 0.87196 0.99745 0.98605 0.92498 0.78702 0.92018 0.91369 0.93658 0.91825 0.91970 0.90937 0.88106 0.91585 0.90043 0.89091 0.76710 0.89005 0.88675 0.91866 0.90466 0.90760 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.36 13.96 55.43 0.77 -24.59 16 2 C 0.07 1.93 5.46 -17.82 -0.10 1.84 16 3 Si 0.94 22.68 24.80 -169.99 -4.22 18.47 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.33 -8.15 7.11 56.52 0.40 -7.75 16 6 H -0.26 -6.33 5.22 56.52 0.30 -6.04 16 7 C -0.55 -13.78 8.79 -34.44 -0.30 -14.08 16 8 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 9 C 0.23 4.74 0.78 -89.82 -0.07 4.67 16 10 O -0.56 -12.02 8.65 -35.23 -0.30 -12.32 16 11 C -0.15 -2.63 5.79 -25.37 -0.15 -2.78 16 12 C 0.03 0.44 5.65 -2.75 -0.02 0.43 16 13 N -0.51 -8.52 5.54 -230.34 -1.28 -9.80 16 14 C 0.05 0.64 5.29 -3.82 -0.02 0.62 16 15 C -0.13 -1.59 1.30 -91.85 -0.12 -1.71 16 16 H 0.09 1.21 5.53 -51.93 -0.29 0.93 16 17 C -0.15 -1.80 3.09 -27.36 -0.08 -1.88 16 18 C 0.11 1.19 6.47 -3.67 -0.02 1.17 16 19 N -0.72 -8.17 5.27 -59.90 -0.32 -8.48 16 20 C 0.52 6.94 7.06 -11.25 -0.08 6.87 16 21 O -0.56 -9.69 17.92 5.56 0.10 -9.59 16 22 C -0.14 -1.55 5.58 -27.48 -0.15 -1.70 16 23 C -0.10 -1.07 4.91 -27.29 -0.13 -1.21 16 24 C 0.03 0.59 4.16 -1.81 -0.01 0.58 16 25 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.37 7.13 8.69 45.56 0.40 7.53 16 27 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 28 H 0.07 1.20 7.62 -51.93 -0.40 0.80 16 29 H 0.05 0.62 5.20 -51.93 -0.27 0.35 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.76 7.74 -51.93 -0.40 0.36 16 32 H 0.07 0.93 8.01 -51.93 -0.42 0.52 16 33 H 0.10 1.39 3.53 -51.92 -0.18 1.21 16 34 H 0.07 0.76 8.03 -51.93 -0.42 0.35 16 35 H 0.08 0.94 6.71 -51.93 -0.35 0.59 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 4.06 8.91 -40.82 -0.36 3.69 16 38 H 0.09 0.95 6.77 -51.93 -0.35 0.60 16 39 H 0.09 0.99 8.13 -51.93 -0.42 0.57 16 40 H 0.06 0.70 7.86 -51.93 -0.41 0.29 16 41 H 0.08 0.73 8.00 -51.93 -0.42 0.32 16 42 H 0.07 1.32 3.86 -51.93 -0.20 1.12 16 43 H 0.08 1.61 6.52 -51.93 -0.34 1.27 16 LS Contribution 311.51 15.07 4.69 4.69 Total: -1.00 -30.97 311.51 -7.54 -38.51 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -5.74 Total: 10.31 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -1.25 Total: -7.19 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.82 Total: -42.87 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.21 Total: -21.92 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.22 Total: 18.47 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.97 -7.54 -38.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326018549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.533 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds