Wall clock time and date at job start Tue Mar 31 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99504 * 2 1 4 4 H 1.48503 * 109.47300 * 270.40695 * 3 2 1 5 5 H 1.48504 * 109.47408 * 30.41436 * 3 2 1 6 6 H 1.48501 * 109.46837 * 150.41169 * 3 2 1 7 7 C 1.37869 * 120.00583 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99844 * 352.22497 * 7 2 1 9 9 C 1.50697 * 120.00439 * 172.22447 * 7 2 1 10 10 O 1.42901 * 110.78272 * 329.20327 * 9 7 2 11 11 C 1.54595 * 110.72525 * 205.95560 * 9 7 2 12 12 C 1.53997 * 105.22771 * 219.73277 * 11 9 7 13 13 N 1.47901 * 107.05458 * 358.72222 * 12 11 9 14 14 C 1.46910 * 110.99767 * 145.84377 * 13 12 11 15 15 C 1.53003 * 109.46989 * 270.76043 * 14 13 12 16 16 H 1.08998 * 108.56682 * 306.52090 * 15 14 13 17 17 C 1.51780 * 108.61597 * 64.45763 * 15 14 13 18 18 C 1.52986 * 110.87913 * 188.12256 * 17 15 14 19 19 N 1.47190 * 108.66114 * 273.52608 * 18 17 15 20 20 C 1.33377 * 120.42450 * 71.95972 * 19 18 17 21 21 O 1.21282 * 119.88973 * 179.71362 * 20 19 18 22 22 C 1.51422 * 120.21852 * 359.73958 * 20 19 18 23 23 C 1.51792 * 108.61342 * 188.71667 * 15 14 13 24 24 C 1.48533 * 105.82097 * 25.33487 * 13 12 11 25 25 H 0.96994 * 120.00658 * 359.97438 * 1 2 3 26 26 H 0.96704 * 113.99678 * 301.00945 * 10 9 7 27 27 H 1.08996 * 110.31264 * 100.76665 * 11 9 7 28 28 H 1.09001 * 110.31141 * 338.69699 * 11 9 7 29 29 H 1.08998 * 109.91960 * 118.07454 * 12 11 9 30 30 H 1.08996 * 109.91680 * 239.37420 * 12 11 9 31 31 H 1.08996 * 109.46629 * 30.76135 * 14 13 12 32 32 H 1.09000 * 109.46950 * 150.76106 * 14 13 12 33 33 H 1.09009 * 109.19250 * 308.48180 * 17 15 14 34 34 H 1.08999 * 109.19394 * 67.75869 * 17 15 14 35 35 H 1.08996 * 109.60725 * 33.28350 * 18 17 15 36 36 H 1.09005 * 109.60138 * 153.78017 * 18 17 15 37 37 H 0.97003 * 119.78800 * 251.98335 * 19 18 17 38 38 H 1.09001 * 109.62999 * 48.44582 * 22 20 19 39 39 H 1.09000 * 109.63020 * 168.83683 * 22 20 19 40 40 H 1.09001 * 109.22079 * 292.40198 * 23 15 14 41 41 H 1.09003 * 109.22438 * 51.74583 * 23 15 14 42 42 H 1.08996 * 110.67159 * 79.22492 * 24 13 12 43 43 H 1.09000 * 110.66603 * 202.19146 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4879 2.0516 -1.4001 5 1 1.4508 2.6502 0.7088 6 1 3.5509 1.4378 0.6913 7 6 2.0046 -1.1939 -0.0005 8 1 1.4720 -2.1251 0.1256 9 6 3.5012 -1.1998 -0.1771 10 8 3.9200 -0.1027 -0.9914 11 6 3.9755 -2.5416 -0.7809 12 6 5.2820 -2.8795 -0.0390 13 7 5.5434 -1.7719 0.9056 14 6 6.1786 -2.2668 2.1344 15 6 5.0985 -2.6547 3.1462 16 1 4.4275 -1.8063 3.2800 17 6 4.3025 -3.8180 2.5832 18 6 3.0844 -4.1194 3.4583 19 7 3.4934 -5.0352 4.5356 20 6 4.2582 -4.6001 5.5379 21 8 4.5853 -5.3618 6.4232 22 6 4.7190 -3.1582 5.5745 23 6 5.7660 -2.9556 4.4760 24 6 4.2184 -1.1676 1.1977 25 1 -0.4851 0.8399 0.0004 26 1 3.5277 -0.0968 -1.8753 27 1 4.1647 -2.4303 -1.8485 28 1 3.2307 -3.3185 -0.6083 29 1 5.1670 -3.8150 0.5084 30 1 6.1030 -2.9615 -0.7513 31 1 6.7889 -3.1394 1.9017 32 1 6.8091 -1.4849 2.5577 33 1 3.9676 -3.5689 1.5762 34 1 4.9401 -4.7009 2.5399 35 1 2.7058 -3.1929 3.8899 36 1 2.3076 -4.5887 2.8546 37 1 3.2052 -5.9612 4.5162 38 1 3.8700 -2.4978 5.3978 39 1 5.1575 -2.9384 6.5479 40 1 6.3654 -3.8608 4.3799 41 1 6.4152 -2.1233 4.7481 42 1 3.6747 -1.7669 1.9279 43 1 4.3325 -0.1429 1.5514 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326018549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:53 Heat of formation + Delta-G solvation = -93.939599 kcal Electronic energy + Delta-G solvation = -24239.762303 eV Core-core repulsion = 20898.021567 eV Total energy + Delta-G solvation = -3341.740736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.72988 -40.46792 -38.21078 -36.55309 -34.94466 -34.35550 -32.41272 -31.39249 -29.94108 -28.44022 -26.62074 -25.07572 -24.49810 -21.99999 -21.47503 -20.88068 -20.38719 -19.39325 -18.23424 -17.84447 -17.13269 -17.02257 -16.39445 -16.12074 -15.71227 -15.59430 -15.06633 -14.80438 -14.73825 -14.52824 -14.15712 -13.93072 -13.60358 -13.32986 -13.27544 -13.05678 -12.79616 -12.61542 -12.44577 -12.31414 -12.11240 -12.04372 -11.79476 -11.67247 -11.36564 -11.24195 -11.12593 -10.84755 -10.54698 -10.18599 -10.17679 -8.97478 -8.29551 -6.39164 1.49476 1.55976 1.60954 1.79035 2.35868 2.48188 3.04410 3.27563 3.49881 3.63450 3.67442 3.79744 3.88469 4.07175 4.18379 4.27366 4.33398 4.43598 4.46746 4.49334 4.64267 4.70451 4.76045 4.81041 4.84216 4.88701 5.03149 5.07255 5.08932 5.13211 5.18751 5.26142 5.34250 5.41537 5.50906 5.59119 5.83560 6.06943 6.16059 6.25089 6.34814 6.68654 7.08938 7.21462 7.40011 8.82910 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.005720 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.390854 B = 4894.100948 C = 5308.130275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.028 3.972 3 Si 0.993 3.007 4 H -0.289 1.289 5 H -0.341 1.341 6 H -0.261 1.261 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.216 3.784 10 O -0.563 6.563 11 C -0.144 4.144 12 C 0.035 3.965 13 N -0.525 5.525 14 C 0.049 3.951 15 C -0.126 4.126 16 H 0.076 0.924 17 C -0.147 4.147 18 C 0.109 3.891 19 N -0.711 5.711 20 C 0.516 3.484 21 O -0.607 6.607 22 C -0.137 4.137 23 C -0.093 4.093 24 C 0.041 3.959 25 H 0.264 0.736 26 H 0.373 0.627 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.403 0.597 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.633 -6.755 4.555 13.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.172 4.172 3 Si 0.829 3.171 4 H -0.216 1.216 5 H -0.274 1.274 6 H -0.187 1.187 7 C -0.577 4.577 8 H 0.070 0.930 9 C 0.175 3.825 10 O -0.371 6.371 11 C -0.183 4.183 12 C -0.092 4.092 13 N -0.249 5.249 14 C -0.079 4.079 15 C -0.145 4.145 16 H 0.094 0.906 17 C -0.184 4.184 18 C -0.014 4.014 19 N -0.361 5.361 20 C 0.304 3.696 21 O -0.489 6.489 22 C -0.177 4.177 23 C -0.131 4.131 24 C -0.087 4.087 25 H 0.073 0.927 26 H 0.221 0.779 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.239 0.761 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.432 -6.342 5.273 14.096 hybrid contribution -1.327 -0.200 -0.323 1.381 sum 10.104 -6.542 4.949 13.015 Atomic orbital electron populations 1.70073 1.08251 1.28131 1.50927 1.25736 0.95139 1.03083 0.93204 0.84951 0.77128 0.77229 0.77822 1.21583 1.27386 1.18674 1.21585 0.91577 0.93579 1.50966 0.93044 1.20078 0.90718 0.83436 0.88242 1.86189 1.72240 1.49769 1.28906 1.22986 0.96527 0.98503 1.00254 1.23049 0.97014 0.93487 0.95663 1.64966 1.21303 1.26517 1.12074 1.22500 0.96244 1.00151 0.89052 1.21522 0.98497 0.98691 0.95797 0.90569 1.22210 0.97147 0.98743 1.00344 1.21858 0.97070 0.94463 0.88059 1.45988 1.51183 1.14668 1.24256 1.21025 0.76847 0.91516 0.80229 1.90707 1.59160 1.59442 1.39629 1.22024 1.01471 0.91822 1.02405 1.21138 0.96876 1.03115 0.91966 1.23759 0.88671 0.99047 0.97191 0.92732 0.77859 0.91335 0.91583 0.91586 0.90640 0.90314 0.90295 0.89724 0.90684 0.90377 0.88205 0.76068 0.88267 0.87954 0.91844 0.88833 0.89862 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.38 13.96 21.44 0.30 -54.08 16 2 C 0.03 1.50 5.46 84.65 0.46 1.97 16 3 Si 0.99 46.96 24.80 68.60 1.70 48.66 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 5 H -0.34 -16.78 7.11 99.48 0.71 -16.08 16 6 H -0.26 -12.15 5.22 99.48 0.52 -11.63 16 7 C -0.54 -26.75 8.79 25.60 0.23 -26.52 16 8 H 0.05 2.78 7.85 -2.91 -0.02 2.76 16 9 C 0.22 8.73 0.78 -10.28 -0.01 8.72 16 10 O -0.56 -23.42 8.65 -148.98 -1.29 -24.71 16 11 C -0.14 -4.79 5.79 31.47 0.18 -4.61 16 12 C 0.04 0.97 5.65 86.45 0.49 1.46 16 13 N -0.53 -15.92 5.54 -882.66 -4.89 -20.81 16 14 C 0.05 1.12 5.29 86.30 0.46 1.58 16 15 C -0.13 -2.68 1.30 -11.59 -0.02 -2.69 16 16 H 0.08 1.88 5.53 -2.39 -0.01 1.87 16 17 C -0.15 -3.12 3.09 30.19 0.09 -3.02 16 18 C 0.11 2.23 6.47 86.24 0.56 2.79 16 19 N -0.71 -14.89 5.27 -462.60 -2.44 -17.33 16 20 C 0.52 13.01 7.06 88.10 0.62 13.63 16 21 O -0.61 -20.34 17.92 -3.04 -0.05 -20.40 16 22 C -0.14 -2.74 5.58 30.11 0.17 -2.57 16 23 C -0.09 -1.69 4.91 30.23 0.15 -1.54 16 24 C 0.04 1.48 4.16 86.71 0.36 1.84 16 25 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.37 13.99 8.69 -74.05 -0.64 13.34 16 27 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 28 H 0.07 2.21 7.62 -2.39 -0.02 2.19 16 29 H 0.07 1.57 5.20 -2.39 -0.01 1.55 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 31 H 0.08 1.59 7.74 -2.39 -0.02 1.58 16 32 H 0.08 1.75 8.01 -2.39 -0.02 1.74 16 33 H 0.08 2.13 3.53 -2.38 -0.01 2.12 16 34 H 0.07 1.49 8.03 -2.39 -0.02 1.47 16 35 H 0.08 1.68 6.71 -2.39 -0.02 1.67 16 36 H 0.10 1.89 8.14 -2.38 -0.02 1.88 16 37 H 0.40 7.62 8.91 -92.71 -0.83 6.80 16 38 H 0.10 1.85 6.77 -2.39 -0.02 1.83 16 39 H 0.10 1.92 8.13 -2.39 -0.02 1.90 16 40 H 0.06 1.20 7.86 -2.39 -0.02 1.18 16 41 H 0.09 1.45 8.00 -2.39 -0.02 1.43 16 42 H 0.08 2.84 3.86 -2.39 -0.01 2.83 16 43 H 0.05 2.20 6.52 -2.39 -0.02 2.19 16 Total: -1.00 -66.04 311.51 -3.54 -69.57 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.61 Total: 28.07 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 3.74 Total: -8.98 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -7.03 Total: -92.22 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -1.34 Total: -45.11 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.70 Total: 48.66 kcal Total: -66.04 -3.54 -69.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326018549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.366 kcal (2) G-P(sol) polarization free energy of solvation -66.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds