Wall clock time and date at job start Tue Mar 31 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48500 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47106 * 300.00073 * 3 2 1 6 6 H 1.48499 * 109.46980 * 60.00088 * 3 2 1 7 7 C 1.37880 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99826 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00064 * 0.02562 * 7 2 1 10 10 H 1.08990 * 109.49920 * 60.06140 * 9 7 2 11 11 C 1.53042 * 109.49652 * 180.16574 * 9 7 2 12 12 C 1.53043 * 109.53434 * 181.31720 * 11 9 7 13 13 C 1.53192 * 109.31061 * 298.63005 * 12 11 9 14 14 N 1.46925 * 108.77777 * 54.63694 * 13 12 11 15 15 C 1.34778 * 120.63084 * 126.36535 * 14 13 12 16 16 O 1.21587 * 120.00195 * 174.96566 * 15 14 13 17 17 N 1.34778 * 119.99846 * 354.97041 * 15 14 13 18 18 C 1.46497 * 119.99831 * 185.07116 * 17 15 14 19 19 C 1.53004 * 109.47257 * 179.97438 * 18 17 15 20 20 H 1.09010 * 110.80297 * 308.62750 * 19 18 17 21 21 C 1.54808 * 110.91021 * 185.00291 * 19 18 17 22 22 C 1.54102 * 104.18927 * 220.92385 * 21 19 18 23 23 O 1.43749 * 107.29013 * 357.96773 * 22 21 19 24 24 C 1.44373 * 106.97704 * 26.51303 * 23 22 21 25 25 C 1.46919 * 118.73962 * 306.39308 * 14 13 12 26 26 H 0.96997 * 119.99649 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.45795 * 301.33483 * 11 9 7 28 28 H 1.09001 * 109.46240 * 61.30956 * 11 9 7 29 29 H 1.08999 * 109.49677 * 178.68182 * 12 11 9 30 30 H 1.08994 * 109.49793 * 58.58304 * 12 11 9 31 31 H 1.09003 * 109.58945 * 294.84475 * 13 12 11 32 32 H 1.09005 * 109.58413 * 174.42614 * 13 12 11 33 33 H 0.96997 * 120.00189 * 5.06564 * 17 15 14 34 34 H 1.08998 * 109.47317 * 300.00304 * 18 17 15 35 35 H 1.09007 * 109.47151 * 60.00077 * 18 17 15 36 36 H 1.09011 * 110.48483 * 339.59416 * 21 19 18 37 37 H 1.08996 * 110.49073 * 102.10979 * 21 19 18 38 38 H 1.08993 * 109.88121 * 117.38867 * 22 21 19 39 39 H 1.08993 * 109.87704 * 238.39669 * 22 21 19 40 40 H 1.09000 * 110.62068 * 201.44058 * 24 23 22 41 41 H 1.09003 * 110.61847 * 78.44017 * 24 23 22 42 42 H 1.09000 * 109.59113 * 173.39442 * 25 14 13 43 43 H 1.09003 * 109.58753 * 293.81848 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 0.6254 -2.5573 -0.8923 11 6 2.2450 -3.6629 0.0021 12 6 1.4810 -4.9885 -0.0323 13 6 0.6022 -5.0993 1.2176 14 7 -0.2566 -3.9099 1.2989 15 6 -1.5933 -4.0349 1.4168 16 8 -2.2847 -3.0473 1.5751 17 7 -2.1638 -5.2547 1.3593 18 6 -3.6231 -5.3823 1.3756 19 6 -4.0066 -6.8616 1.3003 20 1 -3.5006 -7.3508 0.4678 21 6 -5.5415 -7.0295 1.1893 22 6 -5.8583 -8.2243 2.1095 23 8 -4.6086 -8.7015 2.6356 24 6 -3.6969 -7.5820 2.6372 25 6 0.3695 -2.5818 1.2486 26 1 -0.4849 0.8400 -0.0004 27 1 2.8898 -3.5925 -0.8740 28 1 2.8534 -3.6179 0.9054 29 1 2.1898 -5.8164 -0.0532 30 1 0.8534 -5.0237 -0.9226 31 1 1.2335 -5.1555 2.1044 32 1 -0.0174 -5.9936 1.1505 33 1 -1.6081 -6.0480 1.3070 34 1 -4.0152 -4.9514 2.2968 35 1 -4.0436 -4.8543 0.5197 36 1 -6.0499 -6.1317 1.5412 37 1 -5.8278 -7.2507 0.1612 38 1 -6.5052 -7.9024 2.9255 39 1 -6.3476 -9.0128 1.5378 40 1 -2.6636 -7.9285 2.6561 41 1 -3.8979 -6.9245 3.4830 42 1 -0.4036 -1.8148 1.2019 43 1 0.9819 -2.4325 2.1379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328410975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:02 Heat of formation + Delta-G solvation = -80.853845 kcal Electronic energy + Delta-G solvation = -22899.100528 eV Core-core repulsion = 19557.927233 eV Total energy + Delta-G solvation = -3341.173295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.03376 -39.33343 -36.90357 -34.94745 -33.41087 -32.20219 -31.55428 -29.82595 -29.38605 -25.99656 -25.03183 -23.97509 -22.65911 -21.81951 -20.92411 -20.04871 -18.74483 -17.60175 -16.92323 -16.27508 -15.90750 -15.54749 -15.41143 -14.87218 -14.57955 -14.09333 -13.78161 -13.68944 -13.53112 -13.24213 -12.85274 -12.59659 -12.41926 -12.04548 -11.89346 -11.87001 -11.62821 -11.16112 -10.99320 -10.91225 -10.88368 -10.47928 -10.38581 -10.22073 -9.95030 -9.87286 -9.45204 -9.09686 -8.93719 -8.75373 -8.41100 -7.63174 -5.97489 -4.06345 3.17622 3.32080 3.39829 3.42767 3.67146 3.85385 4.21597 4.40485 4.46285 4.49018 4.62961 4.82514 5.00282 5.11667 5.27692 5.32693 5.38020 5.45419 5.49769 5.52727 5.58040 5.62384 5.65960 5.83974 5.95479 5.99567 6.16309 6.31883 6.57396 6.59287 6.66746 6.79263 6.81586 6.99561 7.07229 7.35402 7.50656 7.75979 7.94097 8.07831 8.42313 8.59027 8.97517 9.25587 9.59270 11.07654 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030829 B = 0.003648 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.024370 B = 7672.737302 C = 8318.737115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.116 3.884 14 N -0.622 5.622 15 C 0.701 3.299 16 O -0.584 6.584 17 N -0.759 5.759 18 C 0.151 3.849 19 C -0.134 4.134 20 H 0.092 0.908 21 C -0.148 4.148 22 C 0.047 3.953 23 O -0.380 6.380 24 C 0.051 3.949 25 C 0.129 3.871 26 H 0.263 0.737 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.390 0.610 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.122 0.878 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.102 -16.632 2.895 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.359 5.359 15 C 0.402 3.598 16 O -0.461 6.461 17 N -0.419 5.419 18 C 0.026 3.974 19 C -0.153 4.153 20 H 0.110 0.890 21 C -0.187 4.187 22 C -0.030 4.030 23 O -0.299 6.299 24 C -0.025 4.025 25 C 0.009 3.991 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.226 0.774 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.140 0.860 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.731 -15.946 3.080 17.987 hybrid contribution 0.687 0.688 -0.174 0.988 sum -7.044 -15.258 2.906 17.055 Atomic orbital electron populations 1.69903 1.05721 1.26688 1.49363 1.25062 0.94878 0.99265 0.94873 0.86541 0.80030 0.83846 0.77613 1.19814 1.21046 1.20972 1.21115 0.92917 0.90126 1.51764 0.92333 1.18995 0.92615 0.92223 0.94187 0.95392 1.21613 0.98536 0.94062 1.00527 1.21951 0.98600 0.99152 0.97495 1.21496 0.93326 0.87478 0.98570 1.47789 1.03502 1.08883 1.75731 1.15936 0.82532 0.83056 0.78264 1.90920 1.61749 1.36679 1.56774 1.45326 1.06753 1.07518 1.82280 1.21022 0.80400 0.93464 1.02509 1.22998 0.96595 0.96399 0.99330 0.88986 1.22921 0.95072 0.99343 1.01332 1.23146 0.87172 0.96328 0.96318 1.88864 1.22597 1.33338 1.85141 1.23673 0.94576 0.87997 0.96279 1.22183 0.98331 0.80503 0.98120 0.92730 0.93075 0.93185 0.92343 0.92205 0.92106 0.92233 0.77399 0.91558 0.91464 0.89956 0.90029 0.92314 0.89882 0.88913 0.91625 0.85969 0.94293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.82 11.39 55.43 0.63 -25.18 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.13 8.56 -34.44 -0.29 -14.43 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 12 C -0.13 -2.11 6.08 -26.61 -0.16 -2.28 16 13 C 0.12 1.76 6.43 -3.71 -0.02 1.74 16 14 N -0.62 -12.55 2.97 -178.49 -0.53 -13.08 16 15 C 0.70 14.29 8.30 -86.92 -0.72 13.57 16 16 O -0.58 -14.70 15.79 5.29 0.08 -14.61 16 17 N -0.76 -11.07 5.40 -65.22 -0.35 -11.42 16 18 C 0.15 1.89 5.02 -4.04 -0.02 1.87 16 19 C -0.13 -1.24 3.13 -88.61 -0.28 -1.51 16 20 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 21 C -0.15 -1.16 6.60 -25.20 -0.17 -1.33 16 22 C 0.05 0.38 7.70 37.73 0.29 0.67 16 23 O -0.38 -4.08 11.52 -35.23 -0.41 -4.49 16 24 C 0.05 0.48 7.11 38.21 0.27 0.76 16 25 C 0.13 3.16 5.39 -3.71 -0.02 3.14 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.71 5.57 -51.93 -0.29 0.42 16 33 H 0.39 4.58 5.93 -40.82 -0.24 4.34 16 34 H 0.07 0.88 7.98 -51.93 -0.41 0.47 16 35 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.08 0.62 7.86 -51.92 -0.41 0.21 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.63 7.93 -51.93 -0.41 0.22 16 42 H 0.12 3.53 5.15 -51.93 -0.27 3.26 16 43 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -32.71 337.23 -9.14 -41.85 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.07 Total: 3.25 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.56 Total: 2.29 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.25 Total: -49.68 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.32 Total: -19.10 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.71 -9.14 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328410975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.999 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds