Wall clock time and date at job start Tue Mar 31 2020 06:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00150 * 2 1 4 4 H 1.48506 * 109.47001 * 270.00514 * 3 2 1 5 5 H 1.48506 * 109.47061 * 29.99814 * 3 2 1 6 6 H 1.48497 * 109.47385 * 150.00159 * 3 2 1 7 7 C 1.37885 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99538 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99913 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.52734 * 299.91754 * 9 7 2 11 11 C 1.53047 * 109.49566 * 179.83956 * 9 7 2 12 12 C 1.53035 * 109.53462 * 178.68354 * 11 9 7 13 13 C 1.53191 * 109.31821 * 61.36755 * 12 11 9 14 14 N 1.46927 * 108.77109 * 305.36239 * 13 12 11 15 15 C 1.34780 * 120.62881 * 233.62776 * 14 13 12 16 16 O 1.21594 * 119.99669 * 174.74734 * 15 14 13 17 17 N 1.34771 * 120.00186 * 354.75033 * 15 14 13 18 18 C 1.46494 * 120.00356 * 184.98184 * 17 15 14 19 19 C 1.53001 * 109.47632 * 179.97438 * 18 17 15 20 20 H 1.09001 * 110.45109 * 54.30201 * 19 18 17 21 21 C 1.54502 * 110.51134 * 176.90152 * 19 18 17 22 22 C 1.54486 * 104.06117 * 118.65019 * 21 19 18 23 23 O 1.44420 * 104.80101 * 23.97685 * 22 21 19 24 24 C 1.44643 * 105.37070 * 319.56665 * 23 22 21 25 25 C 1.46931 * 118.74013 * 53.60713 * 14 13 12 26 26 H 0.96997 * 120.00461 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.45711 * 58.66419 * 11 9 7 28 28 H 1.08996 * 109.44766 * 298.69451 * 11 9 7 29 29 H 1.08999 * 109.50193 * 301.41198 * 12 11 9 30 30 H 1.09003 * 109.52042 * 181.33417 * 12 11 9 31 31 H 1.09001 * 109.59061 * 185.57364 * 13 12 11 32 32 H 1.08995 * 109.58665 * 65.14683 * 13 12 11 33 33 H 0.97001 * 119.99885 * 4.98381 * 17 15 14 34 34 H 1.09002 * 109.46949 * 300.00104 * 18 17 15 35 35 H 1.09004 * 109.47269 * 59.99421 * 18 17 15 36 36 H 1.09004 * 110.51385 * 237.28673 * 21 19 18 37 37 H 1.09001 * 110.51698 * 359.86845 * 21 19 18 38 38 H 1.08994 * 110.37474 * 142.80816 * 22 21 19 39 39 H 1.09009 * 110.36817 * 265.03627 * 22 21 19 40 40 H 1.09007 * 110.34330 * 281.59602 * 24 23 22 41 41 H 1.09002 * 110.51138 * 159.18886 * 24 23 22 42 42 H 1.09002 * 109.58664 * 66.18174 * 25 14 13 43 43 H 1.09000 * 109.58569 * 186.60095 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6254 -2.5587 0.8901 11 6 2.2450 -3.6629 -0.0052 12 6 1.4810 -4.9885 0.0279 13 6 0.6022 -5.0983 -1.2220 14 7 -0.2566 -3.9089 -1.3022 15 6 -1.5934 -4.0338 -1.4203 16 8 -2.3013 -3.0457 -1.3896 17 7 -2.1454 -5.2538 -1.5722 18 6 -3.5853 -5.3820 -1.8098 19 6 -3.9501 -6.8616 -1.9459 20 1 -3.6010 -7.4213 -1.0781 21 6 -5.4762 -7.0291 -2.1200 22 6 -5.6249 -7.6968 -3.5051 23 8 -4.3638 -8.3635 -3.7305 24 6 -3.3542 -7.4488 -3.2444 25 6 0.3696 -2.5807 -1.2508 26 1 -0.4851 0.8400 0.0004 27 1 2.8896 -3.5933 0.8709 28 1 2.8533 -3.6169 -0.9084 29 1 0.8533 -5.0246 0.9183 30 1 2.1894 -5.8167 0.0485 31 1 -0.0174 -5.9926 -1.1557 32 1 1.2335 -5.1537 -2.1088 33 1 -1.5893 -6.0472 -1.5243 34 1 -4.1317 -4.9482 -0.9723 35 1 -3.8503 -4.8568 -2.7275 36 1 -5.8812 -7.6737 -1.3398 37 1 -5.9710 -6.0580 -2.1067 38 1 -6.4397 -8.4206 -3.4919 39 1 -5.8002 -6.9431 -4.2728 40 1 -3.1778 -6.6572 -3.9728 41 1 -2.4277 -7.9815 -3.0298 42 1 0.9819 -2.4307 -2.1400 43 1 -0.4036 -1.8138 -1.2035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328410976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:05 Heat of formation + Delta-G solvation = -80.489677 kcal Electronic energy + Delta-G solvation = -22925.908220 eV Core-core repulsion = 19584.750716 eV Total energy + Delta-G solvation = -3341.157504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04815 -39.30879 -36.89341 -34.93152 -33.40313 -32.18669 -31.53722 -29.79904 -29.33174 -25.97062 -25.02247 -23.98273 -22.86191 -21.81237 -20.78267 -20.03839 -18.74910 -17.57721 -16.82415 -16.29144 -15.91927 -15.65765 -15.35303 -14.87321 -14.58020 -14.18143 -13.75412 -13.62098 -13.41687 -13.13877 -12.91846 -12.58872 -12.43886 -12.06866 -11.94108 -11.84843 -11.53843 -11.16934 -10.98264 -10.87590 -10.86307 -10.50246 -10.39109 -10.21559 -10.05345 -9.85829 -9.43688 -9.07833 -8.92553 -8.76794 -8.40226 -7.62735 -5.95844 -4.05236 3.18856 3.33208 3.39989 3.42265 3.69851 3.84581 4.24995 4.42328 4.44941 4.51140 4.62725 4.82623 5.02643 5.11975 5.27324 5.33667 5.37896 5.45275 5.49948 5.54281 5.56832 5.63228 5.64180 5.85086 5.93822 5.99046 6.16715 6.32240 6.50185 6.59563 6.67898 6.79294 6.81615 7.00411 7.05629 7.36678 7.51335 7.76638 7.95198 8.08754 8.43358 8.59177 8.98438 9.26083 9.60206 11.08962 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030097 B = 0.003679 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.102380 B = 7609.816324 C = 8266.582036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.699 3.301 16 O -0.582 6.582 17 N -0.759 5.759 18 C 0.149 3.851 19 C -0.134 4.134 20 H 0.089 0.911 21 C -0.147 4.147 22 C 0.044 3.956 23 O -0.378 6.378 24 C 0.048 3.952 25 C 0.128 3.872 26 H 0.263 0.737 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.390 0.610 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.039 0.961 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 -16.478 -4.779 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.401 3.599 16 O -0.459 6.459 17 N -0.419 5.419 18 C 0.024 3.976 19 C -0.154 4.154 20 H 0.108 0.892 21 C -0.185 4.185 22 C -0.033 4.033 23 O -0.297 6.297 24 C -0.028 4.028 25 C 0.008 3.992 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.226 0.774 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.057 0.943 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.545 -15.785 -4.872 18.161 hybrid contribution 0.746 0.670 0.187 1.020 sum -6.799 -15.114 -4.685 17.223 Atomic orbital electron populations 1.69899 1.05686 1.26771 1.49193 1.25063 0.94874 0.99225 0.94896 0.86603 0.79788 0.83567 0.78089 1.20661 1.21234 1.19973 1.21075 0.92864 0.90158 1.51952 0.92410 1.18981 0.92593 0.92168 0.94238 0.95354 1.21612 0.98542 0.94073 1.00510 1.21947 0.98593 0.99156 0.97498 1.21487 0.93332 0.87464 0.98558 1.47792 1.03471 1.08876 1.75785 1.15957 0.82638 0.83102 0.78238 1.90936 1.60441 1.36640 1.57858 1.45339 1.08710 1.07469 1.80385 1.21130 0.81083 0.93586 1.01755 1.22802 0.96170 0.96695 0.99690 0.89224 1.22925 0.95122 1.02282 0.98215 1.23422 0.87468 0.96737 0.95635 1.89142 1.15681 1.41076 1.83801 1.23590 0.92299 0.93058 0.93885 1.22186 0.98336 0.80564 0.98124 0.92681 0.93078 0.93202 0.92216 0.92336 0.92258 0.92148 0.77448 0.91393 0.91762 0.90265 0.89759 0.89114 0.92105 0.91613 0.89031 0.94283 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.88 11.39 55.43 0.63 -25.25 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.21 8.56 -34.44 -0.29 -14.51 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.18 5.11 -26.69 -0.14 -2.31 16 12 C -0.13 -2.13 6.08 -26.61 -0.16 -2.29 16 13 C 0.12 1.77 6.39 -3.71 -0.02 1.74 16 14 N -0.62 -12.55 2.97 -178.50 -0.53 -13.08 16 15 C 0.70 14.26 8.29 -86.92 -0.72 13.54 16 16 O -0.58 -14.71 15.77 5.28 0.08 -14.63 16 17 N -0.76 -11.02 5.33 -65.23 -0.35 -11.37 16 18 C 0.15 1.86 4.82 -4.04 -0.02 1.84 16 19 C -0.13 -1.23 3.16 -89.06 -0.28 -1.51 16 20 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.15 -1.15 6.74 -25.16 -0.17 -1.32 16 22 C 0.04 0.36 7.64 37.94 0.29 0.65 16 23 O -0.38 -4.07 11.65 -35.23 -0.41 -4.48 16 24 C 0.05 0.46 6.97 37.93 0.26 0.72 16 25 C 0.13 3.15 5.41 -3.71 -0.02 3.13 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.70 5.65 -51.93 -0.29 0.41 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.39 4.55 5.87 -40.82 -0.24 4.31 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.85 8.01 -51.93 -0.42 0.43 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.63 7.73 -51.93 -0.40 0.23 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 40 H 0.07 0.65 7.78 -51.93 -0.40 0.25 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.12 3.54 5.11 -51.93 -0.27 3.28 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -32.88 336.75 -9.15 -42.03 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.06 Total: 3.27 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.57 Total: 2.10 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.25 Total: -49.70 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.33 Total: -19.11 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.88 -9.15 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328410976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.459 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds