Wall clock time and date at job start Tue Mar 31 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00362 * 2 1 4 4 H 1.48498 * 109.47407 * 239.99637 * 3 2 1 5 5 H 1.48507 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47544 * 119.99518 * 3 2 1 7 7 C 1.37881 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00593 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99586 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50133 * 300.06255 * 9 7 2 11 11 C 1.53044 * 109.49690 * 179.97438 * 9 7 2 12 12 C 1.53038 * 109.53616 * 178.68467 * 11 9 7 13 13 C 1.53184 * 109.31679 * 61.36660 * 12 11 9 14 14 N 1.46929 * 108.77667 * 305.36229 * 13 12 11 15 15 C 1.34776 * 120.63466 * 233.58557 * 14 13 12 16 16 O 1.21587 * 119.99906 * 185.03087 * 15 14 13 17 17 N 1.34770 * 119.99690 * 5.03271 * 15 14 13 18 18 C 1.46499 * 119.99868 * 174.92873 * 17 15 14 19 19 C 1.52997 * 109.47348 * 179.97438 * 18 17 15 20 20 H 1.09005 * 110.82953 * 308.64328 * 19 18 17 21 21 C 1.54807 * 110.91012 * 184.99938 * 19 18 17 22 22 C 1.54108 * 104.18789 * 220.91951 * 21 19 18 23 23 O 1.43745 * 107.29167 * 357.97120 * 22 21 19 24 24 C 1.44370 * 106.97611 * 26.51065 * 23 22 21 25 25 C 1.46933 * 118.73576 * 53.86048 * 14 13 12 26 26 H 0.97004 * 119.99970 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.45659 * 58.66392 * 11 9 7 28 28 H 1.09001 * 109.44787 * 298.70069 * 11 9 7 29 29 H 1.09003 * 109.49561 * 301.40966 * 12 11 9 30 30 H 1.09001 * 109.51913 * 181.33624 * 12 11 9 31 31 H 1.08998 * 109.59162 * 185.57912 * 13 12 11 32 32 H 1.09003 * 109.70613 * 65.21619 * 13 12 11 33 33 H 0.97004 * 120.00315 * 354.92412 * 17 15 14 34 34 H 1.08998 * 109.47491 * 59.99718 * 18 17 15 35 35 H 1.09000 * 109.46859 * 299.99723 * 18 17 15 36 36 H 1.08998 * 110.49321 * 102.24229 * 21 19 18 37 37 H 1.09000 * 110.48600 * 339.59148 * 21 19 18 38 38 H 1.08998 * 109.87827 * 117.39230 * 22 21 19 39 39 H 1.08994 * 109.87573 * 238.54305 * 22 21 19 40 40 H 1.09003 * 110.61995 * 78.44585 * 24 23 22 41 41 H 1.08999 * 110.62034 * 201.28250 * 24 23 22 42 42 H 1.09002 * 109.58840 * 65.92306 * 25 14 13 43 43 H 1.08996 * 109.58583 * 186.35737 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6229 -2.5567 0.8896 11 6 2.2449 -3.6629 0.0005 12 6 1.4808 -4.9885 0.0336 13 6 0.6056 -5.1003 -1.2186 14 7 -0.2530 -3.9110 -1.3032 15 6 -1.5894 -4.0360 -1.4257 16 8 -2.2801 -3.0484 -1.5866 17 7 -2.1599 -5.2557 -1.3698 18 6 -3.6192 -5.3834 -1.3912 19 6 -4.0029 -6.8627 -1.3180 20 1 -3.4689 -7.4394 -2.0733 21 6 -5.5333 -7.0444 -1.4641 22 6 -5.8848 -8.1323 -0.4307 23 8 -4.6555 -8.5469 0.1882 24 6 -3.7421 -7.4323 0.0997 25 6 0.3735 -2.5827 -1.2578 26 1 -0.4850 0.8401 -0.0004 27 1 2.8871 -3.5919 0.8784 28 1 2.8559 -3.6183 -0.9010 29 1 0.8506 -5.0230 0.9224 30 1 2.1891 -5.8166 0.0576 31 1 -0.0143 -5.9944 -1.1525 32 1 1.2376 -5.1584 -2.1047 33 1 -1.6044 -6.0491 -1.3154 34 1 -4.0081 -4.9528 -2.3139 35 1 -4.0427 -4.8552 -0.5369 36 1 -5.7834 -7.3793 -2.4707 37 1 -6.0519 -6.1146 -1.2305 38 1 -6.5595 -7.7243 0.3219 39 1 -6.3529 -8.9804 -0.9303 40 1 -3.9715 -6.6868 0.8611 41 1 -2.7110 -7.7724 0.1956 42 1 0.9889 -2.4384 -2.1459 43 1 -0.3994 -1.8153 -1.2176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328410977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:07 Heat of formation + Delta-G solvation = -80.794935 kcal Electronic energy + Delta-G solvation = -22950.970513 eV Core-core repulsion = 19609.799772 eV Total energy + Delta-G solvation = -3341.170741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.02571 -39.32240 -36.88992 -34.94352 -33.39927 -32.19672 -31.55164 -29.81078 -29.37226 -25.98947 -25.02688 -23.96176 -22.64680 -21.81916 -20.91763 -20.04214 -18.74842 -17.59517 -16.91906 -16.25414 -15.89750 -15.55165 -15.40540 -14.84837 -14.55073 -14.07999 -13.82208 -13.71887 -13.52502 -13.28084 -12.66063 -12.56411 -12.51010 -12.02537 -11.94036 -11.85753 -11.61958 -11.12720 -10.96489 -10.92473 -10.87812 -10.51449 -10.39651 -10.21367 -9.92756 -9.86653 -9.45235 -9.08968 -8.95032 -8.75374 -8.40255 -7.62979 -5.96806 -4.05752 3.17850 3.34236 3.39666 3.40932 3.69120 3.85843 4.21421 4.41045 4.46565 4.49296 4.64165 4.83505 5.01821 5.12243 5.27682 5.33172 5.39304 5.46408 5.49945 5.56293 5.58554 5.62569 5.66416 5.83457 5.95319 6.00264 6.16458 6.32111 6.59079 6.59553 6.66864 6.79254 6.81766 6.99666 7.07470 7.34665 7.50541 7.75995 7.94244 8.07554 8.42559 8.59024 8.97524 9.25633 9.59653 11.08357 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.003754 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.447931 B = 7455.957563 C = 8017.566648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.701 3.299 16 O -0.584 6.584 17 N -0.759 5.759 18 C 0.151 3.849 19 C -0.134 4.134 20 H 0.091 0.909 21 C -0.148 4.148 22 C 0.047 3.953 23 O -0.380 6.380 24 C 0.051 3.949 25 C 0.129 3.871 26 H 0.264 0.736 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.390 0.610 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.039 0.961 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.116 -16.607 -2.742 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.402 3.598 16 O -0.461 6.461 17 N -0.419 5.419 18 C 0.026 3.974 19 C -0.153 4.153 20 H 0.109 0.891 21 C -0.186 4.186 22 C -0.030 4.030 23 O -0.299 6.299 24 C -0.026 4.026 25 C 0.009 3.991 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.226 0.774 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.057 0.943 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.758 -15.908 -2.753 17.912 hybrid contribution 0.721 0.667 -0.092 0.986 sum -7.037 -15.241 -2.845 17.027 Atomic orbital electron populations 1.69887 1.05719 1.26915 1.49139 1.25053 0.94874 0.99222 0.94850 0.86659 0.79568 0.83221 0.78540 1.20264 1.21270 1.20321 1.21045 0.92846 0.90182 1.52050 0.92449 1.19059 0.92606 0.92150 0.94081 0.95341 1.21613 0.98543 0.94074 1.00515 1.21946 0.98621 0.99146 0.97459 1.21490 0.93344 0.87467 0.98547 1.47797 1.03532 1.08898 1.75688 1.15936 0.82538 0.83059 0.78265 1.90920 1.61778 1.36679 1.56763 1.45327 1.06762 1.07521 1.82267 1.21022 0.80398 0.93448 1.02533 1.22989 0.96711 0.96830 0.98743 0.89061 1.22922 0.95038 1.00090 1.00598 1.23156 0.87648 0.97515 0.94679 1.88865 1.24128 1.36797 1.80142 1.23682 0.94595 0.88844 0.95464 1.22271 0.98248 0.80482 0.98114 0.92616 0.93071 0.93203 0.92172 0.92343 0.92255 0.92145 0.77398 0.91444 0.91579 0.90094 0.89934 0.92273 0.89915 0.91544 0.88866 0.94293 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.82 11.41 55.43 0.63 -25.19 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.20 8.56 -34.44 -0.29 -14.49 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.00 2.26 -91.42 -0.21 0.79 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.17 5.10 -26.69 -0.14 -2.30 16 12 C -0.13 -2.11 6.08 -26.62 -0.16 -2.27 16 13 C 0.12 1.76 6.43 -3.71 -0.02 1.74 16 14 N -0.62 -12.54 2.97 -178.23 -0.53 -13.07 16 15 C 0.70 14.29 8.30 -86.92 -0.72 13.56 16 16 O -0.58 -14.70 15.78 5.29 0.08 -14.62 16 17 N -0.76 -11.07 5.40 -65.23 -0.35 -11.42 16 18 C 0.15 1.89 5.02 -4.04 -0.02 1.87 16 19 C -0.13 -1.23 3.13 -88.61 -0.28 -1.51 16 20 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 21 C -0.15 -1.16 6.60 -25.20 -0.17 -1.32 16 22 C 0.05 0.39 7.70 37.74 0.29 0.68 16 23 O -0.38 -4.19 11.52 -35.23 -0.41 -4.60 16 24 C 0.05 0.50 7.11 38.21 0.27 0.77 16 25 C 0.13 3.17 5.41 -3.48 -0.02 3.15 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.70 5.57 -51.93 -0.29 0.41 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.39 4.58 5.93 -40.82 -0.24 4.34 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.91 7.98 -51.93 -0.41 0.49 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.69 7.93 -51.93 -0.41 0.28 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.12 3.50 5.18 -51.93 -0.27 3.23 16 LS Contribution 337.30 15.07 5.08 5.08 Total: -1.00 -32.66 337.30 -9.14 -41.80 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.07 Total: 3.37 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.56 Total: 2.33 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.25 Total: -49.68 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.32 Total: -19.22 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.66 -9.14 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328410977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.993 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds