Wall clock time and date at job start Tue Mar 31 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99642 * 2 1 4 4 H 1.48496 * 109.47241 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46842 * 120.00366 * 3 2 1 6 6 H 1.48500 * 109.47256 * 240.00102 * 3 2 1 7 7 C 1.37874 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00026 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46803 * 300.00061 * 9 7 2 11 11 O 1.42902 * 109.47358 * 59.99380 * 9 7 2 12 12 C 1.52999 * 109.47319 * 179.97438 * 9 7 2 13 13 N 1.46890 * 109.47134 * 180.65871 * 12 9 7 14 14 C 1.46842 * 111.00549 * 293.87801 * 13 12 9 15 15 C 1.53031 * 109.52787 * 174.16098 * 14 13 12 16 16 C 1.53116 * 109.28001 * 59.18159 * 15 14 13 17 17 C 1.53122 * 109.16023 * 302.34525 * 16 15 14 18 18 H 1.08992 * 109.50181 * 297.67583 * 17 16 15 19 19 C 1.50694 * 109.50331 * 177.59313 * 17 16 15 20 20 O 1.21289 * 120.00051 * 240.00062 * 19 17 16 21 21 N 1.34769 * 120.00211 * 60.00308 * 19 17 16 22 22 C 1.46505 * 120.00357 * 179.97438 * 21 19 17 23 23 C 1.52991 * 117.50112 * 223.74704 * 22 21 19 24 24 C 1.53005 * 117.49762 * 155.08439 * 22 21 19 25 25 C 1.46848 * 110.99946 * 169.66976 * 13 12 9 26 26 H 0.97007 * 119.99923 * 180.02562 * 1 2 3 27 27 H 0.96709 * 113.99423 * 60.00046 * 11 9 7 28 28 H 1.09003 * 109.46958 * 300.66276 * 12 9 7 29 29 H 1.09004 * 109.46569 * 60.65604 * 12 9 7 30 30 H 1.09004 * 109.46337 * 294.18268 * 14 13 12 31 31 H 1.09010 * 109.45959 * 54.15234 * 14 13 12 32 32 H 1.08999 * 109.50731 * 179.12488 * 15 14 13 33 33 H 1.09004 * 109.50675 * 299.24205 * 15 14 13 34 34 H 1.09006 * 109.52145 * 62.24966 * 16 15 14 35 35 H 1.09000 * 109.52704 * 182.38083 * 16 15 14 36 36 H 0.97001 * 119.99782 * 359.97438 * 21 19 17 37 37 H 1.09007 * 115.54903 * 9.42165 * 22 21 19 38 38 H 1.09004 * 117.50188 * 359.97438 * 23 22 21 39 39 H 1.09006 * 117.50086 * 145.02187 * 23 22 21 40 40 H 1.09005 * 117.49686 * 214.97916 * 24 22 21 41 41 H 1.08996 * 117.49821 * 359.97438 * 24 22 21 42 42 H 1.09003 * 109.46096 * 305.85396 * 25 13 12 43 43 H 1.09002 * 109.46634 * 65.82090 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6241 -2.5574 0.8880 11 8 0.4298 -2.5741 -1.1688 12 6 2.2453 -3.6621 -0.0027 13 7 1.5109 -4.9341 -0.0198 14 6 0.7562 -5.1229 1.2256 15 6 -0.1076 -6.3812 1.1145 16 6 0.7932 -7.5915 0.8533 17 6 1.6037 -7.3486 -0.4229 18 1 0.9262 -7.2507 -1.2711 19 6 2.5362 -8.5093 -0.6552 20 8 3.7345 -8.3258 -0.6963 21 7 2.0389 -9.7513 -0.8174 22 6 2.9455 -10.8797 -1.0438 23 6 2.5607 -11.8886 -2.1277 24 6 2.4511 -12.2731 -0.6501 25 6 2.4179 -6.0622 -0.2672 26 1 -0.4850 -0.8401 0.0004 27 1 0.9223 -2.5281 -1.9998 28 1 2.8797 -3.5969 -0.8867 29 1 2.8641 -3.6117 0.8932 30 1 1.4511 -5.2318 2.0584 31 1 0.1164 -4.2573 1.3974 32 1 -0.6558 -6.5297 2.0448 33 1 -0.8121 -6.2675 0.2906 34 1 1.4719 -7.7288 1.6952 35 1 0.1788 -8.4835 0.7314 36 1 1.0807 -9.8982 -0.7843 37 1 4.0058 -10.6652 -0.9094 38 1 1.6328 -11.7132 -2.6721 39 1 3.3678 -12.3382 -2.7062 40 1 3.1863 -12.9755 -0.2570 41 1 1.4517 -12.3502 -0.2222 42 1 2.9852 -5.8787 -1.1797 43 1 3.1051 -6.1667 0.5725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335515818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:03 Heat of formation + Delta-G solvation = -73.075739 kcal Electronic energy + Delta-G solvation = -22592.925468 eV Core-core repulsion = 19252.089457 eV Total energy + Delta-G solvation = -3340.836011 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37815 -38.49874 -37.23219 -35.86189 -33.56333 -32.48725 -32.01079 -30.85375 -28.12493 -24.87295 -24.47213 -22.79857 -22.73449 -22.07991 -21.14754 -20.24669 -19.55335 -17.45139 -17.10790 -16.83801 -15.62378 -15.10197 -14.97879 -14.77825 -14.61859 -14.27286 -13.89093 -13.70219 -13.65634 -13.13462 -13.01401 -12.86532 -12.45202 -12.16924 -12.00436 -11.68016 -11.65533 -11.38445 -11.01583 -10.90965 -10.79634 -10.71422 -10.60545 -10.26985 -10.08672 -10.00262 -9.77352 -9.14210 -9.04015 -8.43303 -7.99541 -7.71275 -6.32048 -4.15043 2.42850 2.80437 3.44293 3.45550 3.54195 3.64721 4.24783 4.38843 4.52472 4.55324 4.58600 4.60867 4.74747 4.86839 5.14264 5.21164 5.26440 5.39216 5.42217 5.45939 5.56323 5.61842 5.65951 5.75155 5.81622 5.85852 5.97518 6.05507 6.09473 6.17880 6.25190 6.33159 6.36732 6.49399 6.71639 7.22637 7.41951 7.54790 7.68018 8.04599 8.07225 8.39361 8.89659 9.26625 9.71101 11.08122 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039271 B = 0.003147 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.826135 B = 8896.442334 C = 9222.398189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.035 3.965 3 Si 1.066 2.934 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.652 4.652 8 H 0.048 0.952 9 C 0.221 3.779 10 H 0.047 0.953 11 O -0.571 6.571 12 C 0.040 3.960 13 N -0.528 5.528 14 C 0.052 3.948 15 C -0.113 4.113 16 C -0.108 4.108 17 C -0.101 4.101 18 H 0.107 0.893 19 C 0.526 3.474 20 O -0.536 6.536 21 N -0.705 5.705 22 C 0.080 3.920 23 C -0.195 4.195 24 C -0.191 4.191 25 C 0.076 3.924 26 H 0.284 0.716 27 H 0.351 0.649 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.402 0.598 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 -22.726 -0.377 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.174 4.174 3 Si 0.894 3.106 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.690 4.690 8 H 0.066 0.934 9 C 0.164 3.836 10 H 0.065 0.935 11 O -0.375 6.375 12 C -0.088 4.088 13 N -0.252 5.252 14 C -0.076 4.076 15 C -0.151 4.151 16 C -0.146 4.146 17 C -0.123 4.123 18 H 0.125 0.875 19 C 0.312 3.688 20 O -0.412 6.412 21 N -0.356 5.356 22 C -0.026 4.026 23 C -0.233 4.233 24 C -0.229 4.229 25 C -0.052 4.052 26 H 0.096 0.904 27 H 0.196 0.804 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.236 0.764 37 H 0.154 0.846 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.144 -20.949 -0.317 20.983 hybrid contribution 0.922 -1.907 0.296 2.139 sum 2.066 -22.857 -0.021 22.950 Atomic orbital electron populations 1.70634 1.06885 1.32273 1.42952 1.25759 0.96510 1.02370 0.92758 0.83612 0.74944 0.75510 0.76499 1.20758 1.21536 1.21420 1.22454 0.94382 0.92668 1.59479 0.93403 1.19483 0.88233 0.90180 0.85724 0.93495 1.86452 1.38722 1.96507 1.15777 1.22903 0.96964 0.89019 0.99870 1.61912 1.26827 1.01789 1.34669 1.22115 0.96773 0.98409 0.90286 1.21568 0.97852 0.93539 1.02140 1.21563 0.98133 0.98789 0.96114 1.21352 0.97318 0.92815 1.00829 0.87458 1.20823 0.89445 0.83617 0.74868 1.90698 1.16207 1.84558 1.49712 1.45436 1.09782 1.06536 1.73834 1.21597 0.95929 0.82328 1.02746 1.23438 1.04028 1.03770 0.92082 1.23385 1.03323 0.98136 0.98079 1.21776 0.93069 0.88921 1.01477 0.90385 0.80411 0.91596 0.95409 0.95686 0.89768 0.91434 0.90645 0.91868 0.91773 0.76355 0.84555 0.88445 0.88009 0.87926 0.88464 0.90472 0.94814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.53 55.43 0.75 -26.59 16 2 C 0.03 1.00 5.40 -17.82 -0.10 0.90 16 3 Si 1.07 25.20 29.90 -169.99 -5.08 20.12 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.65 -18.28 8.76 -34.44 -0.30 -18.58 16 8 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 9 C 0.22 5.59 2.30 -27.88 -0.06 5.52 16 10 H 0.05 1.28 6.33 -51.93 -0.33 0.95 16 11 O -0.57 -14.52 11.87 -35.23 -0.42 -14.94 16 12 C 0.04 0.85 4.56 -3.83 -0.02 0.83 16 13 N -0.53 -9.57 4.51 -234.67 -1.06 -10.63 16 14 C 0.05 0.87 5.29 -3.84 -0.02 0.85 16 15 C -0.11 -1.43 6.09 -26.66 -0.16 -1.59 16 16 C -0.11 -1.17 5.16 -26.61 -0.14 -1.31 16 17 C -0.10 -1.28 2.69 -91.69 -0.25 -1.52 16 18 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 19 C 0.53 6.72 7.16 -10.99 -0.08 6.65 16 20 O -0.54 -8.95 15.55 5.55 0.09 -8.86 16 21 N -0.71 -6.56 5.47 -53.81 -0.29 -6.86 16 22 C 0.08 0.70 6.43 -67.93 -0.44 0.26 16 23 C -0.19 -1.29 10.46 -26.70 -0.28 -1.57 16 24 C -0.19 -1.18 10.46 -26.69 -0.28 -1.46 16 25 C 0.08 1.23 4.03 -3.83 -0.02 1.21 16 26 H 0.28 8.84 6.47 -40.82 -0.26 8.58 16 27 H 0.35 8.20 9.04 45.56 0.41 8.62 16 28 H 0.07 1.40 7.98 -51.93 -0.41 0.99 16 29 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 1.59 6.24 -51.92 -0.32 1.26 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 36 H 0.40 2.70 8.30 -40.82 -0.34 2.36 16 37 H 0.14 1.41 7.40 -51.93 -0.38 1.03 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 43 H 0.03 0.58 8.08 -51.93 -0.42 0.16 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -32.97 345.57 -9.25 -42.22 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.30 Total: 10.14 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -2.14 Total: -9.81 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.60 Total: -44.07 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.33 Total: -23.80 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.97 -9.25 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335515818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.858 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds