Wall clock time and date at job start Tue Mar 31 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86795 * 119.99996 * 2 1 4 4 H 1.48500 * 109.47197 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46862 * 120.00065 * 3 2 1 6 6 H 1.48496 * 109.47126 * 239.99659 * 3 2 1 7 7 C 1.38951 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99949 * 198.99516 * 7 2 1 9 9 N 1.37098 * 120.00017 * 18.99248 * 7 2 1 10 10 C 1.34780 * 120.00159 * 43.24149 * 9 7 2 11 11 O 1.21288 * 119.99768 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00158 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46967 * 177.04014 * 12 10 9 14 14 C 1.46846 * 110.99658 * 170.48735 * 13 12 10 15 15 C 1.53033 * 109.52264 * 185.84115 * 14 13 12 16 16 C 1.53120 * 109.27723 * 300.82139 * 15 14 13 17 17 C 1.52996 * 109.52425 * 177.56172 * 16 15 14 18 18 O 1.42895 * 109.47651 * 65.30980 * 17 16 15 19 19 C 1.53121 * 109.16403 * 57.64997 * 16 15 14 20 20 C 1.46849 * 110.99850 * 294.69298 * 13 12 10 21 21 C 1.46507 * 120.00091 * 223.24530 * 9 7 2 22 22 C 1.53002 * 117.49685 * 3.10799 * 21 9 7 23 23 C 1.52997 * 117.49748 * 294.48575 * 21 9 7 24 24 H 0.96994 * 119.99710 * 354.89811 * 1 2 3 25 25 H 1.08999 * 109.47560 * 297.04561 * 12 10 9 26 26 H 1.09006 * 109.46674 * 57.04628 * 12 10 9 27 27 H 1.09002 * 109.46280 * 305.85462 * 14 13 12 28 28 H 1.08996 * 109.46851 * 65.82256 * 14 13 12 29 29 H 1.08994 * 109.50751 * 180.87613 * 15 14 13 30 30 H 1.09006 * 109.50588 * 60.76074 * 15 14 13 31 31 H 1.08999 * 109.51939 * 297.74826 * 16 15 14 32 32 H 1.09004 * 109.47504 * 185.31629 * 17 16 15 33 33 H 1.09008 * 109.47277 * 305.31121 * 17 16 15 34 34 H 0.96701 * 114.00921 * 180.02562 * 18 17 16 35 35 H 1.08993 * 109.50006 * 182.40202 * 19 16 15 36 36 H 1.09001 * 109.52880 * 62.30770 * 19 16 15 37 37 H 1.08995 * 109.46083 * 294.17615 * 20 13 12 38 38 H 1.08997 * 109.46020 * 54.15926 * 20 13 12 39 39 H 1.08995 * 115.54760 * 148.81389 * 21 9 7 40 40 H 1.08999 * 117.49753 * 359.97438 * 22 21 9 41 41 H 1.09000 * 117.49422 * 145.01998 * 22 21 9 42 42 H 1.08997 * 117.49988 * 214.97861 * 23 21 9 43 43 H 1.09007 * 117.49893 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 1.2832 2.7464 0.0006 5 1 3.1019 1.6963 1.2125 6 1 3.1020 1.6963 -1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0448 -1.2290 0.3039 9 7 1.3794 -2.3582 -0.3875 10 6 0.5790 -2.3586 -1.4719 11 8 0.4160 -1.3374 -2.1057 12 6 -0.1125 -3.6281 -1.8975 13 7 -0.9752 -3.3517 -3.0540 14 6 -1.4894 -4.5977 -3.6366 15 6 -2.2614 -4.2819 -4.9196 16 6 -3.4185 -3.3336 -4.5929 17 6 -4.1574 -2.9659 -5.8811 18 8 -4.7766 -4.1332 -6.4251 19 6 -2.8601 -2.0645 -3.9431 20 6 -2.0707 -2.4447 -2.6884 21 6 1.5766 -3.5918 0.3779 22 6 2.4380 -3.5102 1.6397 23 6 2.9801 -4.2009 0.3867 24 1 -0.4849 0.8367 0.0747 25 1 0.6336 -4.3743 -2.1708 26 1 -0.7188 -4.0052 -1.0738 27 1 -0.6563 -5.2613 -3.8681 28 1 -2.1542 -5.0850 -2.9234 29 1 -2.6562 -5.2052 -5.3435 30 1 -1.5937 -3.8071 -5.6386 31 1 -4.1069 -3.8229 -3.9040 32 1 -4.9202 -2.2187 -5.6619 33 1 -3.4488 -2.5604 -6.6035 34 1 -5.2639 -3.9743 -7.2451 35 1 -3.6826 -1.4038 -3.6694 36 1 -2.2020 -1.5543 -4.6464 37 1 -2.7327 -2.9421 -1.9796 38 1 -1.6597 -1.5445 -2.2315 39 1 0.7300 -4.2781 0.3895 40 1 2.8583 -2.5388 1.9002 41 1 2.1580 -4.1429 2.4819 42 1 3.0569 -5.2880 0.4046 43 1 3.7567 -3.6840 -0.1773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336307515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:34 Heat of formation + Delta-G solvation = -42.072492 kcal Electronic energy + Delta-G solvation = -23371.654131 eV Core-core repulsion = 20032.162522 eV Total energy + Delta-G solvation = -3339.491610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.23838 -38.19937 -36.72216 -35.79605 -33.37751 -32.56126 -30.87851 -30.42566 -28.12625 -25.68552 -23.91792 -22.77847 -21.70569 -21.44647 -21.05011 -19.50470 -19.05990 -17.31248 -16.36117 -16.00324 -15.53856 -15.02611 -14.80760 -14.52378 -14.31810 -14.00968 -13.76851 -13.63110 -13.10124 -12.84854 -12.69575 -12.44032 -11.98435 -11.71837 -11.66965 -11.14388 -11.02535 -10.88578 -10.82964 -10.79931 -10.52377 -10.50391 -10.21637 -10.17038 -9.98232 -9.91636 -9.83219 -9.64974 -8.66114 -8.02256 -7.53804 -6.95431 -6.07251 -3.80383 3.33003 3.39925 3.44281 4.16422 4.18665 4.22606 4.42607 4.80932 4.84687 5.00084 5.00746 5.20520 5.33266 5.42427 5.49593 5.59096 5.60912 5.65213 5.76193 5.78169 5.80737 5.91982 5.95711 6.00155 6.03460 6.11258 6.23783 6.24632 6.29337 6.35743 6.42281 6.47721 6.69041 6.76572 6.87215 6.94660 7.52914 7.56716 7.66685 7.71719 8.33087 9.12212 9.25525 9.72916 10.39269 11.02124 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.004931 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.439391 B = 5677.148545 C = 6774.841294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.347 4.347 8 H 0.075 0.925 9 N -0.432 5.432 10 C 0.486 3.514 11 O -0.513 6.513 12 C 0.045 3.955 13 N -0.516 5.516 14 C 0.055 3.945 15 C -0.102 4.102 16 C -0.089 4.089 17 C 0.081 3.919 18 O -0.575 6.575 19 C -0.105 4.105 20 C 0.055 3.945 21 C 0.076 3.924 22 C -0.174 4.174 23 C -0.208 4.208 24 H 0.263 0.737 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.374 0.626 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.017 0.983 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 -8.538 -6.169 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.135 4.135 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.474 4.474 8 H 0.093 0.907 9 N -0.154 5.154 10 C 0.273 3.727 11 O -0.388 6.388 12 C -0.086 4.086 13 N -0.241 5.241 14 C -0.074 4.074 15 C -0.140 4.140 16 C -0.107 4.107 17 C 0.003 3.997 18 O -0.380 6.380 19 C -0.143 4.143 20 C -0.072 4.072 21 C -0.031 4.031 22 C -0.212 4.212 23 C -0.247 4.247 24 H 0.073 0.927 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.221 0.779 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.036 0.964 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.416 -7.885 -6.407 11.513 hybrid contribution -0.385 0.526 0.354 0.742 sum -5.801 -7.359 -6.052 11.155 Atomic orbital electron populations 1.69816 1.06515 1.27333 1.43198 1.25176 0.94784 0.99193 0.94322 0.86281 0.79296 0.82057 0.78381 1.21288 1.20544 1.20007 1.18775 0.94750 0.84077 1.49768 0.90718 1.42793 1.44574 1.06238 1.21834 1.19597 0.83114 0.88834 0.81194 1.90491 1.61476 1.33521 1.53352 1.21976 0.96447 0.98422 0.91798 1.61556 1.19872 1.12654 1.29993 1.22100 0.97770 0.91693 0.95801 1.21520 0.96047 0.99171 0.97271 1.21240 0.96656 0.97523 0.95326 1.22282 0.95300 0.86752 0.95337 1.86483 1.72078 1.35144 1.44256 1.21530 0.98939 0.95763 0.98045 1.22228 0.90919 0.98989 0.95106 1.21679 0.92341 0.91452 0.97613 1.23052 1.04599 1.02524 0.91002 1.23313 0.99928 0.98531 1.02936 0.92699 0.89860 0.94192 0.91162 0.95659 0.91452 0.91360 0.91181 0.93876 0.93526 0.77946 0.91973 0.90879 0.96436 0.86846 0.88299 0.87512 0.89908 0.89893 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.31 11.70 55.50 0.65 -23.66 16 2 C 0.08 2.11 4.36 -17.46 -0.08 2.03 16 3 Si 0.91 22.01 29.60 -169.99 -5.03 16.98 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.35 -9.45 7.97 -14.93 -0.12 -9.57 16 8 H 0.08 1.98 7.20 -52.49 -0.38 1.60 16 9 N -0.43 -10.79 2.84 -107.73 -0.31 -11.10 16 10 C 0.49 12.27 6.58 -10.98 -0.07 12.20 16 11 O -0.51 -14.80 12.13 5.55 0.07 -14.74 16 12 C 0.04 0.90 4.14 -4.97 -0.02 0.88 16 13 N -0.52 -9.83 4.39 -236.12 -1.04 -10.87 16 14 C 0.05 0.84 5.46 -3.84 -0.02 0.82 16 15 C -0.10 -1.43 5.25 -26.65 -0.14 -1.57 16 16 C -0.09 -1.22 2.49 -90.50 -0.23 -1.45 16 17 C 0.08 0.93 6.43 37.16 0.24 1.17 16 18 O -0.57 -6.37 13.26 -35.23 -0.47 -6.84 16 19 C -0.10 -1.66 5.38 -26.65 -0.14 -1.81 16 20 C 0.05 1.06 5.11 -3.83 -0.02 1.04 16 21 C 0.08 1.52 5.89 -67.93 -0.40 1.12 16 22 C -0.17 -3.15 9.80 -26.73 -0.26 -3.41 16 23 C -0.21 -3.56 10.36 -26.73 -0.28 -3.84 16 24 H 0.26 7.38 8.32 -40.82 -0.34 7.04 16 25 H 0.08 1.50 8.00 -51.93 -0.42 1.09 16 26 H 0.04 0.77 7.40 -51.93 -0.38 0.39 16 27 H 0.07 0.99 8.02 -51.93 -0.42 0.58 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.88 7.90 -51.93 -0.41 0.47 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.37 2.34 9.12 45.56 0.42 2.76 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.11 2.73 5.84 -51.93 -0.30 2.42 16 39 H 0.10 1.79 6.88 -51.93 -0.36 1.43 16 40 H 0.11 2.14 6.69 -51.93 -0.35 1.80 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 LS Contribution 339.38 15.07 5.11 5.11 Total: -1.00 -32.60 339.38 -8.93 -41.53 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.38 Total: 5.97 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.54 Total: -2.39 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.69 Total: -45.62 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.40 Total: -21.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.60 -8.93 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336307515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.542 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds