Wall clock time and date at job start Tue Mar 31 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47576 * 2 1 4 4 N 1.46495 * 109.47416 * 120.00230 * 2 1 3 5 5 C 1.34774 * 120.00280 * 275.00197 * 4 2 1 6 6 O 1.21588 * 119.99833 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00427 * 180.02562 * 5 4 2 8 8 C 1.46507 * 120.00346 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47138 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46969 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47288 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99682 * 359.97438 * 11 10 9 13 13 C 1.37868 * 120.00040 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00275 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99948 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47096 * 90.00108 * 15 13 11 17 17 H 1.48497 * 109.47167 * 209.99761 * 15 13 11 18 18 H 1.48495 * 109.47327 * 330.00006 * 15 13 11 19 19 C 1.50706 * 109.47027 * 240.00406 * 2 1 3 20 20 N 1.31072 * 126.65689 * 285.02671 * 19 2 1 21 21 N 1.28843 * 107.99150 * 179.97438 * 20 19 2 22 22 N 1.28736 * 109.39429 * 359.97438 * 21 20 19 23 23 N 1.29019 * 108.81236 * 359.74496 * 22 21 20 24 24 C 1.46502 * 126.44456 * 180.24656 * 23 22 21 25 25 H 1.09001 * 109.47459 * 59.99810 * 1 2 3 26 26 H 1.08995 * 109.47610 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46975 * 299.99736 * 1 2 3 28 28 H 0.97004 * 120.00061 * 94.99777 * 4 2 1 29 29 H 0.96998 * 120.00337 * 359.97438 * 7 5 4 30 30 H 1.09001 * 109.46750 * 300.00061 * 8 7 5 31 31 H 1.08999 * 109.46909 * 59.99335 * 8 7 5 32 32 H 1.08997 * 109.46925 * 299.99729 * 9 8 7 33 33 H 1.08999 * 109.47482 * 60.00031 * 9 8 7 34 34 H 1.09006 * 109.47157 * 300.00007 * 10 9 8 35 35 H 1.09006 * 109.47183 * 59.99884 * 10 9 8 36 36 H 0.97010 * 120.00077 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.47182 * 270.18532 * 24 23 22 38 38 H 1.09003 * 109.46453 * 30.18101 * 24 23 22 39 39 H 1.08996 * 109.47366 * 150.18172 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8583 1.1614 2.4117 7 7 2.5968 -0.6536 3.4573 8 6 2.7373 0.0773 4.7193 9 6 3.2616 -0.8690 5.8011 10 6 3.4089 -0.1055 7.1188 11 6 3.9248 -1.0377 8.1846 12 1 4.1269 -2.0714 7.9460 13 6 4.1377 -0.5711 9.4643 14 7 3.8901 0.6873 9.7552 15 14 4.7764 -1.7269 10.7856 16 1 6.2611 -1.6965 10.7943 17 1 4.2649 -1.2945 12.1110 18 1 4.3113 -3.1083 10.5021 19 6 2.0323 -0.7104 -1.2306 20 7 2.0361 -2.0041 -1.4405 21 7 2.5432 -2.2167 -2.6057 22 7 2.8625 -1.0921 -3.1446 23 7 2.5578 -0.1390 -2.3301 24 6 2.7512 1.2953 -2.5575 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2490 -1.6318 1.1525 29 1 2.8276 -1.5947 3.4138 30 1 3.4384 0.9012 4.5858 31 1 1.7668 0.4713 5.0209 32 1 2.5602 -1.6926 5.9344 33 1 4.2321 -1.2633 5.4997 34 1 4.1106 0.7180 6.9851 35 1 2.4387 0.2892 7.4204 36 1 4.0402 1.0156 10.6556 37 1 3.7365 1.5907 -2.1968 38 1 2.6761 1.5074 -3.6240 39 1 1.9851 1.8548 -2.0209 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340558413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:48 Heat of formation + Delta-G solvation = 75.157009 kcal Electronic energy + Delta-G solvation = -21309.055154 eV Core-core repulsion = 17903.399404 eV Total energy + Delta-G solvation = -3405.655749 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.155 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.63297 -40.10101 -36.73413 -36.05362 -35.22641 -33.42772 -32.68134 -31.34639 -30.17441 -28.89958 -26.68020 -25.18216 -23.87504 -23.11867 -21.81552 -20.87019 -20.39710 -18.65886 -17.77443 -17.61716 -16.95942 -16.25504 -15.61055 -15.35733 -14.84308 -14.47445 -14.32496 -14.21692 -14.12761 -13.88331 -13.51094 -13.10381 -12.65116 -12.51732 -12.29789 -12.03569 -11.83509 -11.74687 -11.48138 -11.33545 -10.91628 -10.75638 -10.60831 -10.58763 -10.26049 -9.88410 -9.51429 -9.47287 -9.14211 -8.74685 -8.38366 -6.03126 -4.06157 0.71894 1.45232 1.78538 2.59514 3.13019 3.30266 3.35467 3.36805 3.39706 3.73100 4.20040 4.23170 4.33831 4.43943 4.61687 4.65279 4.77614 4.91418 5.18344 5.24230 5.32863 5.39602 5.59243 5.65823 5.77039 5.80139 6.10451 6.16557 6.44629 6.58909 6.70692 6.94681 6.99133 7.62100 7.74477 7.95636 7.98303 8.16494 8.36547 8.56720 9.00546 9.58223 11.08141 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.036931 B = 0.002471 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.990362 B =11326.656407 C =11629.352270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.253 3.747 3 H 0.113 0.887 4 N -0.742 5.742 5 C 0.706 3.294 6 O -0.591 6.591 7 N -0.737 5.737 8 C 0.135 3.865 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.175 3.825 20 N -0.292 5.292 21 N -0.072 5.072 22 N -0.091 5.091 23 N -0.301 5.301 24 C 0.073 3.927 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.405 0.595 29 H 0.396 0.604 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.261 0.739 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 1.257 -24.892 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.143 3.857 3 H 0.130 0.870 4 N -0.401 5.401 5 C 0.406 3.594 6 O -0.470 6.470 7 N -0.390 5.390 8 C 0.012 3.988 9 C -0.159 4.159 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.104 4.104 20 N -0.142 5.142 21 N -0.066 5.066 22 N -0.077 5.077 23 N -0.103 5.103 24 C -0.068 4.068 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.241 0.759 29 H 0.230 0.770 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.882 1.335 -25.437 25.935 hybrid contribution 0.550 -0.554 1.058 1.315 sum -4.332 0.780 -24.379 24.773 Atomic orbital electron populations 1.22241 0.92197 1.03951 1.03677 1.18934 0.94952 0.95059 0.76769 0.86974 1.45017 1.72847 1.14226 1.07992 1.15881 0.78438 0.85019 0.80080 1.90923 1.57319 1.14181 1.84544 1.45394 1.69899 1.14099 1.09648 1.21560 1.01412 0.95231 0.80604 1.21903 0.99752 0.98244 0.96042 1.19027 0.97512 0.95466 0.89331 1.21203 1.43956 0.96370 0.94535 0.92636 1.25023 0.95620 0.95117 0.98694 1.69965 1.48721 1.14193 1.20430 0.86584 0.79069 0.81103 0.81176 1.20667 1.21203 1.19880 1.26199 1.00121 0.90646 0.93414 1.74971 1.17569 1.11381 1.10252 1.78656 1.11259 1.15343 1.01325 1.78916 1.18510 0.92239 1.18056 1.48420 1.39590 1.10641 1.11615 1.22543 1.05680 0.72210 1.06414 0.91488 0.90991 0.89590 0.75937 0.77007 0.91839 0.91736 0.92638 0.92729 0.96264 0.96212 0.92924 0.87920 0.87055 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.47 37.15 0.35 -0.86 16 2 C 0.25 2.12 2.86 -69.09 -0.20 1.93 16 3 H 0.11 0.86 6.64 -51.93 -0.34 0.52 16 4 N -0.74 -7.52 5.07 -59.82 -0.30 -7.82 16 5 C 0.71 9.61 8.53 -86.92 -0.74 8.87 16 6 O -0.59 -10.00 16.01 5.29 0.08 -9.91 16 7 N -0.74 -9.97 5.56 -65.22 -0.36 -10.33 16 8 C 0.13 2.27 5.67 -4.04 -0.02 2.24 16 9 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 15 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.18 1.59 6.91 -155.43 -1.07 0.52 16 20 N -0.29 -3.40 12.09 32.70 0.40 -3.00 16 21 N -0.07 -0.92 13.43 60.35 0.81 -0.10 16 22 N -0.09 -0.98 13.29 60.35 0.80 -0.18 16 23 N -0.30 -2.35 3.75 -65.02 -0.24 -2.60 16 24 C 0.07 0.19 11.04 59.85 0.66 0.85 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.41 3.69 8.39 -40.82 -0.34 3.34 16 29 H 0.40 4.38 8.49 -40.82 -0.35 4.03 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.11 0.07 7.41 -51.93 -0.39 -0.32 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -35.01 339.18 -5.32 -40.33 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.61 Total: -0.32 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.71 Total: -1.65 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 1.83 Total: -49.88 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.01 -5.32 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340558413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.482 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds