Wall clock time and date at job start Tue Mar 31 2020 05:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47576 * 2 1 4 4 N 1.46495 * 109.47416 * 120.00230 * 2 1 3 5 5 C 1.34774 * 120.00280 * 275.00197 * 4 2 1 6 6 O 1.21588 * 119.99833 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00427 * 180.02562 * 5 4 2 8 8 C 1.46507 * 120.00346 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47138 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46969 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47288 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99682 * 359.97438 * 11 10 9 13 13 C 1.37868 * 120.00040 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00275 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99948 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47096 * 90.00108 * 15 13 11 17 17 H 1.48497 * 109.47167 * 209.99761 * 15 13 11 18 18 H 1.48495 * 109.47327 * 330.00006 * 15 13 11 19 19 C 1.50706 * 109.47027 * 240.00406 * 2 1 3 20 20 N 1.31072 * 126.65689 * 285.02671 * 19 2 1 21 21 N 1.28843 * 107.99150 * 179.97438 * 20 19 2 22 22 N 1.28736 * 109.39429 * 359.97438 * 21 20 19 23 23 N 1.29019 * 108.81236 * 359.74496 * 22 21 20 24 24 C 1.46502 * 126.44456 * 180.24656 * 23 22 21 25 25 H 1.09001 * 109.47459 * 59.99810 * 1 2 3 26 26 H 1.08995 * 109.47610 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46975 * 299.99736 * 1 2 3 28 28 H 0.97004 * 120.00061 * 94.99777 * 4 2 1 29 29 H 0.96998 * 120.00337 * 359.97438 * 7 5 4 30 30 H 1.09001 * 109.46750 * 300.00061 * 8 7 5 31 31 H 1.08999 * 109.46909 * 59.99335 * 8 7 5 32 32 H 1.08997 * 109.46925 * 299.99729 * 9 8 7 33 33 H 1.08999 * 109.47482 * 60.00031 * 9 8 7 34 34 H 1.09006 * 109.47157 * 300.00007 * 10 9 8 35 35 H 1.09006 * 109.47183 * 59.99884 * 10 9 8 36 36 H 0.97010 * 120.00077 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.47182 * 270.18532 * 24 23 22 38 38 H 1.09003 * 109.46453 * 30.18101 * 24 23 22 39 39 H 1.08996 * 109.47366 * 150.18172 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8583 1.1614 2.4117 7 7 2.5968 -0.6536 3.4573 8 6 2.7373 0.0773 4.7193 9 6 3.2616 -0.8690 5.8011 10 6 3.4089 -0.1055 7.1188 11 6 3.9248 -1.0377 8.1846 12 1 4.1269 -2.0714 7.9460 13 6 4.1377 -0.5711 9.4643 14 7 3.8901 0.6873 9.7552 15 14 4.7764 -1.7269 10.7856 16 1 6.2611 -1.6965 10.7943 17 1 4.2649 -1.2945 12.1110 18 1 4.3113 -3.1083 10.5021 19 6 2.0323 -0.7104 -1.2306 20 7 2.0361 -2.0041 -1.4405 21 7 2.5432 -2.2167 -2.6057 22 7 2.8625 -1.0921 -3.1446 23 7 2.5578 -0.1390 -2.3301 24 6 2.7512 1.2953 -2.5575 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2490 -1.6318 1.1525 29 1 2.8276 -1.5947 3.4138 30 1 3.4384 0.9012 4.5858 31 1 1.7668 0.4713 5.0209 32 1 2.5602 -1.6926 5.9344 33 1 4.2321 -1.2633 5.4997 34 1 4.1106 0.7180 6.9851 35 1 2.4387 0.2892 7.4204 36 1 4.0402 1.0156 10.6556 37 1 3.7365 1.5907 -2.1968 38 1 2.6761 1.5074 -3.6240 39 1 1.9851 1.8548 -2.0209 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340558413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:47 Heat of formation + Delta-G solvation = 48.330887 kcal Electronic energy + Delta-G solvation = -21310.218422 eV Core-core repulsion = 17903.399404 eV Total energy + Delta-G solvation = -3406.819017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.155 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.36937 -41.17080 -37.69631 -36.78720 -36.51525 -35.18109 -33.74079 -32.80909 -31.12459 -29.34115 -28.40081 -25.98831 -25.02857 -24.35314 -22.68595 -22.26990 -21.64310 -19.64942 -18.60227 -18.42132 -18.26379 -17.70290 -16.81494 -16.54578 -16.19993 -15.81113 -15.52234 -15.04232 -14.79828 -14.65480 -14.27701 -14.22815 -13.77039 -13.71774 -13.43435 -13.25603 -13.14686 -12.75161 -12.66741 -12.52566 -12.34754 -12.22958 -11.95121 -11.65545 -11.63986 -11.36493 -11.26036 -11.12510 -10.53374 -10.50483 -9.88968 -8.18033 -6.28876 0.01884 0.87795 0.99976 1.42907 1.43756 1.54669 1.66318 2.07861 2.43090 2.63666 3.08059 3.15948 3.32065 3.72762 3.95339 4.14468 4.17776 4.19923 4.22676 4.28172 4.54530 4.58659 4.60993 4.67547 4.76309 5.00310 5.00832 5.03688 5.18704 5.20146 5.29436 5.47947 5.56199 5.74924 5.86844 5.89241 6.25295 6.88418 6.99228 7.39316 7.40575 7.49794 8.93953 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.036931 B = 0.002471 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.990362 B =11326.656407 C =11629.352270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.254 3.746 3 H 0.125 0.875 4 N -0.730 5.730 5 C 0.709 3.291 6 O -0.624 6.624 7 N -0.730 5.730 8 C 0.151 3.849 9 C -0.103 4.103 10 C 0.024 3.976 11 C -0.541 4.541 12 H 0.065 0.935 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.964 3.036 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.262 1.262 19 C 0.179 3.821 20 N -0.313 5.313 21 N -0.106 5.106 22 N -0.099 5.099 23 N -0.287 5.287 24 C 0.056 3.944 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.412 0.588 29 H 0.411 0.589 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.065 0.935 34 H -0.006 1.006 35 H -0.006 1.006 36 H 0.263 0.737 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 0.657 -25.767 26.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.145 3.855 3 H 0.143 0.857 4 N -0.388 5.388 5 C 0.408 3.592 6 O -0.505 6.505 7 N -0.385 5.385 8 C 0.026 3.974 9 C -0.141 4.141 10 C -0.014 4.014 11 C -0.579 4.579 12 H 0.083 0.917 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.789 3.211 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.186 1.186 19 C -0.101 4.101 20 N -0.163 5.163 21 N -0.099 5.099 22 N -0.086 5.086 23 N -0.090 5.090 24 C -0.083 4.083 25 H 0.109 0.891 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.249 0.751 29 H 0.247 0.753 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.012 0.988 35 H 0.013 0.987 36 H 0.072 0.928 37 H 0.134 0.866 38 H 0.148 0.852 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.705 0.701 -26.365 26.791 hybrid contribution 0.486 -0.271 1.263 1.380 sum -4.218 0.430 -25.103 25.458 Atomic orbital electron populations 1.22196 0.91306 1.03806 1.04254 1.19110 0.95534 0.95230 0.75625 0.85736 1.44892 1.71920 1.14449 1.07489 1.15881 0.78072 0.84582 0.80622 1.90905 1.58703 1.15715 1.85151 1.45074 1.70086 1.14641 1.08694 1.21106 1.00251 0.94528 0.81475 1.21600 1.00841 0.97974 0.93672 1.18937 0.95233 0.95060 0.92127 1.21689 1.43605 0.97144 0.95420 0.91719 1.25983 0.95890 0.96732 1.01394 1.70103 1.50019 1.16236 1.21095 0.85454 0.78568 0.79221 0.77840 1.19891 1.21032 1.18572 1.26143 1.00022 0.90107 0.93783 1.74883 1.18193 1.12919 1.10299 1.78635 1.12801 1.16455 1.02055 1.78836 1.18597 0.92517 1.18625 1.48757 1.37805 1.11864 1.10546 1.23108 1.07364 0.69468 1.08356 0.89071 0.91503 0.90819 0.75133 0.75317 0.93022 0.92949 0.91501 0.91597 0.98774 0.98731 0.92822 0.86576 0.85171 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.47 71.98 0.68 -1.38 16 2 C 0.25 3.77 2.86 44.25 0.13 3.89 16 3 H 0.13 1.60 6.64 -2.39 -0.02 1.59 16 4 N -0.73 -13.58 5.07 -461.42 -2.34 -15.92 16 5 C 0.71 18.35 8.53 179.06 1.53 19.88 16 6 O -0.62 -20.50 16.01 -3.99 -0.06 -20.56 16 7 N -0.73 -18.75 5.56 -478.54 -2.66 -21.41 16 8 C 0.15 5.01 5.67 86.38 0.49 5.50 16 9 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 10 C 0.02 1.23 4.97 29.85 0.15 1.38 16 11 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 12 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 13 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 14 N -0.93 -56.44 13.29 21.44 0.28 -56.15 16 15 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 C 0.18 2.94 6.91 138.14 0.95 3.90 16 20 N -0.31 -7.00 12.09 -50.45 -0.61 -7.61 16 21 N -0.11 -2.64 13.43 37.01 0.50 -2.14 16 22 N -0.10 -2.02 13.29 37.02 0.49 -1.53 16 23 N -0.29 -3.93 3.75 -359.63 -1.35 -5.28 16 24 C 0.06 0.14 11.04 127.77 1.41 1.55 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.41 6.80 8.39 -92.71 -0.78 6.02 16 29 H 0.41 8.24 8.49 -92.71 -0.79 7.45 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 35 H -0.01 -0.32 8.14 -2.38 -0.02 -0.33 16 36 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 37 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 38 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.13 -0.29 7.41 -2.39 -0.02 -0.31 16 Total: -1.00 -76.30 339.18 1.99 -74.31 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -0.48 Total: 8.96 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 6.20 Total: 1.79 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -5.68 Total: -110.04 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.06 Total: -20.56 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -76.30 1.99 -74.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340558413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.645 kcal (2) G-P(sol) polarization free energy of solvation -76.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds