Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21579 * 119.99978 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99908 * 179.97438 * 5 4 2 8 8 C 1.46494 * 119.99635 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47001 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47535 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47471 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99869 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99922 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00388 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99824 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47195 * 89.99983 * 15 13 11 17 17 H 1.48499 * 109.47159 * 209.99893 * 15 13 11 18 18 H 1.48498 * 109.47267 * 329.99963 * 15 13 11 19 19 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 20 20 N 1.31068 * 126.65879 * 75.02606 * 19 2 1 21 21 N 1.28835 * 107.99167 * 179.97438 * 20 19 2 22 22 N 1.28738 * 109.40079 * 0.02562 * 21 20 19 23 23 N 1.29026 * 108.80431 * 359.74319 * 22 21 20 24 24 C 1.46501 * 126.43930 * 180.25283 * 23 22 21 25 25 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 26 26 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 28 28 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 29 29 H 0.96995 * 120.00015 * 359.72369 * 7 5 4 30 30 H 1.09005 * 109.47306 * 299.99972 * 8 7 5 31 31 H 1.09002 * 109.47518 * 60.00210 * 8 7 5 32 32 H 1.09005 * 109.46767 * 299.99934 * 9 8 7 33 33 H 1.08996 * 109.47766 * 59.99412 * 9 8 7 34 34 H 1.09005 * 109.46889 * 299.99675 * 10 9 8 35 35 H 1.09004 * 109.47073 * 59.99170 * 10 9 8 36 36 H 0.96998 * 120.00131 * 180.02562 * 14 13 11 37 37 H 1.09008 * 109.46373 * 270.17722 * 24 23 22 38 38 H 1.09000 * 109.47003 * 30.17058 * 24 23 22 39 39 H 1.08993 * 109.47313 * 150.18123 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8575 1.1613 -2.4119 7 7 2.5968 -0.6535 -3.4575 8 6 2.7362 0.0772 -4.7195 9 6 3.2607 -0.8690 -5.8014 10 6 3.4069 -0.1058 -7.1194 11 6 3.9242 -1.0377 -8.1848 12 1 4.1286 -2.0709 -7.9457 13 6 4.1364 -0.5712 -9.4648 14 7 3.8879 0.6870 -9.7558 15 14 4.7782 -1.7261 -10.7853 16 1 3.6337 -2.3719 -11.4770 17 1 5.5805 -0.9558 -11.7692 18 1 5.6305 -2.7687 -10.1594 19 6 2.0324 -0.7103 1.2305 20 7 2.0371 -2.0041 1.4401 21 7 2.5449 -2.2167 2.6049 22 7 2.8638 -1.0920 3.1441 23 7 2.5680 -0.1396 2.3255 24 6 2.7736 1.2939 2.5474 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.2491 -1.6317 -1.1525 29 1 2.8317 -1.5935 -3.4128 30 1 1.7653 0.4704 -5.0209 31 1 3.4368 0.9016 -4.5866 32 1 4.2316 -1.2626 -5.5003 33 1 2.5600 -1.6932 -5.9342 34 1 2.4363 0.2881 -7.4207 35 1 4.1080 0.7182 -6.9862 36 1 4.0369 1.0151 -10.6564 37 1 1.8899 1.7180 3.0243 38 1 3.6402 1.4411 3.1919 39 1 2.9434 1.7889 1.5913 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340558420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = 75.266629 kcal Electronic energy + Delta-G solvation = -21310.623535 eV Core-core repulsion = 17904.972539 eV Total energy + Delta-G solvation = -3405.650996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.155 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.63281 -40.10436 -36.73470 -36.05410 -35.22888 -33.42857 -32.67973 -31.34769 -30.17763 -28.89262 -26.68120 -25.19286 -23.87459 -23.11830 -21.80807 -20.87202 -20.39879 -18.66534 -17.77206 -17.61649 -16.97134 -16.25690 -15.61149 -15.36226 -14.83720 -14.47251 -14.33140 -14.21205 -14.14470 -13.88638 -13.49128 -13.10161 -12.66072 -12.50705 -12.29850 -12.02329 -11.83574 -11.74676 -11.47936 -11.33297 -10.91597 -10.75737 -10.60989 -10.59570 -10.26207 -9.88452 -9.51751 -9.47345 -9.14281 -8.74824 -8.38384 -6.03180 -4.06196 0.72197 1.45234 1.78510 2.59451 3.12748 3.30276 3.35464 3.36774 3.39633 3.74720 4.16547 4.21509 4.34510 4.43925 4.60747 4.65653 4.80838 4.91405 5.19046 5.24359 5.32793 5.39916 5.59394 5.65684 5.76933 5.80383 6.10305 6.16426 6.44492 6.58792 6.70603 6.94557 6.99077 7.62044 7.74414 7.95595 7.98099 8.16550 8.36500 8.56467 9.00508 9.58156 11.08113 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.036861 B = 0.002472 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.419765 B =11322.121548 C =11622.800698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.253 3.747 3 H 0.112 0.888 4 N -0.743 5.743 5 C 0.706 3.294 6 O -0.591 6.591 7 N -0.737 5.737 8 C 0.135 3.865 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.175 3.825 20 N -0.292 5.292 21 N -0.072 5.072 22 N -0.092 5.092 23 N -0.301 5.301 24 C 0.072 3.928 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.405 0.595 29 H 0.396 0.604 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.786 1.256 24.849 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.143 3.857 3 H 0.130 0.870 4 N -0.401 5.401 5 C 0.406 3.594 6 O -0.470 6.470 7 N -0.390 5.390 8 C 0.012 3.988 9 C -0.159 4.159 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.104 4.104 20 N -0.142 5.142 21 N -0.066 5.066 22 N -0.077 5.077 23 N -0.102 5.102 24 C -0.069 4.069 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.241 0.759 29 H 0.230 0.770 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.754 1.335 25.395 25.871 hybrid contribution 0.519 -0.557 -1.054 1.300 sum -4.235 0.778 24.341 24.719 Atomic orbital electron populations 1.22230 0.92144 1.03923 1.03689 1.18942 0.95007 0.94996 0.76746 0.87001 1.45031 1.72842 1.14240 1.08017 1.15884 0.78450 0.85012 0.80075 1.90920 1.57313 1.14203 1.84535 1.45393 1.69829 1.14196 1.09619 1.21560 1.01418 0.95232 0.80602 1.21904 0.99749 0.98244 0.96045 1.19025 0.97505 0.95474 0.89330 1.21205 1.43927 0.96410 0.94527 0.92636 1.25025 0.95628 0.95099 0.98706 1.69961 1.48837 1.14160 1.20351 0.86583 0.78935 0.80799 0.81607 1.20641 1.21214 1.19894 1.26193 0.99981 0.90667 0.93548 1.74969 1.17545 1.11359 1.10307 1.78652 1.11319 1.15323 1.01275 1.78924 1.18779 0.92245 1.17798 1.48421 1.39408 1.10701 1.11714 1.22551 1.05924 0.72271 1.06127 0.89606 0.91009 0.91466 0.75936 0.77004 0.91726 0.91849 0.92731 0.92638 0.96221 0.96258 0.92921 0.87910 0.87070 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.47 37.16 0.35 -0.86 16 2 C 0.25 2.12 2.96 -69.09 -0.20 1.92 16 3 H 0.11 0.86 6.29 -51.93 -0.33 0.53 16 4 N -0.74 -7.50 5.07 -59.82 -0.30 -7.81 16 5 C 0.71 9.59 8.53 -86.91 -0.74 8.85 16 6 O -0.59 -9.98 16.01 5.30 0.08 -9.89 16 7 N -0.74 -9.95 5.56 -65.23 -0.36 -10.31 16 8 C 0.13 2.26 5.67 -4.04 -0.02 2.24 16 9 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 10 C 0.02 0.60 4.97 -27.89 -0.14 0.47 16 11 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 15 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.18 1.59 6.91 -155.44 -1.07 0.52 16 20 N -0.29 -3.40 12.09 32.70 0.40 -3.01 16 21 N -0.07 -0.91 13.43 60.35 0.81 -0.10 16 22 N -0.09 -0.99 13.29 60.35 0.80 -0.18 16 23 N -0.30 -2.35 3.75 -65.03 -0.24 -2.60 16 24 C 0.07 0.19 11.21 59.85 0.67 0.86 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.41 3.68 8.39 -40.82 -0.34 3.34 16 29 H 0.40 4.37 8.49 -40.82 -0.35 4.03 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.10 0.06 8.14 -51.92 -0.42 -0.36 16 38 H 0.11 0.16 8.14 -51.93 -0.42 -0.27 16 39 H 0.11 0.16 7.00 -51.93 -0.36 -0.21 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -34.97 338.68 -5.28 -40.25 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.57 Total: -0.27 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.71 Total: -1.68 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 1.83 Total: -49.84 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.97 -5.28 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340558420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.518 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds