Wall clock time and date at job start Tue Mar 31 2020 05:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99821 * 2 1 4 4 H 1.48498 * 109.47235 * 269.99604 * 3 2 1 5 5 H 1.48492 * 109.47379 * 30.00127 * 3 2 1 6 6 H 1.48504 * 109.46996 * 149.99929 * 3 2 1 7 7 C 1.37882 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99499 * 359.97438 * 7 2 1 9 9 C 1.50690 * 120.00295 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.47240 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00386 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99598 * 359.97438 * 11 10 9 13 13 C 1.50692 * 119.99995 * 180.27501 * 11 10 9 14 14 N 1.46908 * 109.46835 * 179.72431 * 13 11 10 15 15 C 1.46902 * 110.99779 * 173.51858 * 14 13 11 16 16 C 1.52997 * 109.54669 * 66.99587 * 15 14 13 17 17 C 1.53002 * 117.49964 * 3.26020 * 16 15 14 18 18 C 1.53003 * 117.50104 * 294.59910 * 16 15 14 19 19 C 1.53181 * 109.53855 * 306.72909 * 15 14 13 20 20 C 1.53095 * 109.16640 * 297.11529 * 19 15 14 21 21 O 1.42905 * 109.41318 * 302.39144 * 20 19 15 22 22 C 1.42902 * 114.09409 * 61.16057 * 21 20 19 23 23 C 1.53093 * 109.41647 * 298.83407 * 22 21 20 24 24 H 0.96996 * 119.99762 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47464 * 60.00133 * 9 7 2 26 26 H 1.09003 * 109.47510 * 299.99457 * 9 7 2 27 27 H 0.97004 * 119.99828 * 359.97438 * 10 9 7 28 28 H 1.08995 * 109.47169 * 299.71910 * 13 11 10 29 29 H 1.08997 * 109.47257 * 59.72753 * 13 11 10 30 30 H 1.00900 * 110.99706 * 297.46134 * 14 13 11 31 31 H 1.09000 * 115.54919 * 148.92679 * 16 15 14 32 32 H 1.09001 * 117.49585 * 359.97438 * 17 16 15 33 33 H 1.09000 * 117.49904 * 145.01689 * 17 16 15 34 34 H 1.08997 * 117.49612 * 214.97690 * 18 16 15 35 35 H 1.08997 * 117.49638 * 359.97257 * 18 16 15 36 36 H 1.08998 * 109.52637 * 57.02692 * 19 15 14 37 37 H 1.09010 * 109.52071 * 177.21194 * 19 15 14 38 38 H 1.08999 * 109.47810 * 182.41136 * 20 19 15 39 39 H 1.08998 * 109.47441 * 62.37430 * 20 19 15 40 40 H 1.09004 * 109.48086 * 178.85878 * 22 21 20 41 41 H 1.08998 * 109.49284 * 58.82815 * 22 21 20 42 42 H 1.08991 * 109.52556 * 297.71277 * 23 22 21 43 43 H 1.08997 * 109.57805 * 177.54590 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3251 -2.8215 0.0020 12 8 6.1132 -1.8996 0.0025 13 6 5.8274 -4.2423 -0.0044 14 7 7.2964 -4.2422 -0.0086 15 6 7.8233 -5.6054 0.1400 16 6 7.4772 -6.4263 -1.1038 17 6 6.7591 -5.7073 -2.2476 18 6 5.9981 -6.7086 -1.3750 19 6 7.2045 -6.2617 1.3780 20 6 7.6212 -5.4766 2.6244 21 8 9.0474 -5.4382 2.7068 22 6 9.6786 -4.7933 1.5988 23 6 9.3446 -5.5510 0.3111 24 1 -0.4849 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8753 -0.6804 -0.8889 27 1 3.3696 -3.3126 0.0010 28 1 5.4666 -4.7592 0.8848 29 1 5.4615 -4.7530 -0.8951 30 1 7.6556 -3.8049 -0.8440 31 1 8.1947 -7.2028 -1.3692 32 1 6.5329 -4.6494 -2.1137 33 1 7.0038 -6.0110 -3.2655 34 1 5.7426 -7.6706 -1.8192 35 1 5.2716 -6.3098 -0.6670 36 1 6.1181 -6.2548 1.2894 37 1 7.5575 -7.2898 1.4601 38 1 7.2188 -5.9641 3.5124 39 1 7.2332 -4.4601 2.5602 40 1 10.7583 -4.7884 1.7479 41 1 9.3177 -3.7677 1.5211 42 1 9.7407 -6.5645 0.3717 43 1 9.7887 -5.0365 -0.5410 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340932778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:24 Heat of formation + Delta-G solvation = -35.140496 kcal Electronic energy + Delta-G solvation = -23286.400366 eV Core-core repulsion = 19947.209350 eV Total energy + Delta-G solvation = -3339.191016 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97027 -38.73327 -37.75198 -34.39346 -33.97081 -32.41592 -31.98189 -31.15725 -28.45895 -26.55329 -24.70520 -23.88001 -22.37260 -21.87084 -21.25583 -19.87405 -19.31932 -17.55852 -17.14530 -16.38982 -15.95531 -15.77594 -15.46699 -15.29334 -14.81757 -14.52318 -14.40361 -14.02273 -13.44364 -13.01484 -12.72141 -12.65527 -12.43387 -12.39678 -12.32543 -11.92840 -11.80547 -11.60092 -11.32846 -11.08166 -10.99410 -10.77273 -10.75649 -10.28026 -10.08571 -9.98215 -9.57253 -9.51188 -9.21849 -8.79029 -8.37624 -8.13784 -6.22990 -4.25297 3.22604 3.26555 3.32422 3.41388 3.42283 3.67814 3.89901 4.21047 4.32254 4.42202 4.51989 4.57301 4.75251 4.84126 4.99303 5.06450 5.12326 5.17932 5.26365 5.29460 5.36083 5.38709 5.47510 5.49489 5.58745 5.66200 5.69317 5.76597 5.82239 5.87926 5.90962 5.97565 6.10815 6.74404 6.89287 7.06235 7.21192 7.22481 7.27197 7.38719 8.13023 8.50774 8.74054 8.94396 9.37389 10.88956 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.004030 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.705883 B = 6946.408543 C = 7412.618940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.708 5.708 11 C 0.497 3.503 12 O -0.545 6.545 13 C 0.006 3.994 14 N -0.655 5.655 15 C 0.145 3.855 16 C -0.177 4.177 17 C -0.191 4.191 18 C -0.186 4.186 19 C -0.143 4.143 20 C 0.065 3.935 21 O -0.387 6.387 22 C 0.066 3.934 23 C -0.134 4.134 24 H 0.268 0.732 25 H 0.025 0.975 26 H 0.019 0.981 27 H 0.395 0.605 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.352 0.648 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.067 -15.605 -0.790 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.423 6.423 13 C -0.125 4.125 14 N -0.288 5.288 15 C 0.053 3.947 16 C -0.197 4.197 17 C -0.228 4.228 18 C -0.222 4.222 19 C -0.181 4.181 20 C -0.012 4.012 21 O -0.306 6.306 22 C -0.011 4.011 23 C -0.172 4.172 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.228 0.772 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.173 0.827 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.607 -14.702 0.040 22.180 hybrid contribution -0.486 0.176 -1.324 1.422 sum 16.120 -14.526 -1.284 21.738 Atomic orbital electron populations 1.69879 1.06221 1.27437 1.49443 1.24795 0.94778 0.99172 0.93840 0.86816 0.80603 0.83242 0.79026 1.19884 1.20885 1.18497 1.21093 0.88551 0.95195 1.53329 0.90292 1.19461 0.95167 0.78689 0.96691 1.46168 1.05668 1.10956 1.72950 1.20463 0.83099 0.90683 0.77579 1.90655 1.55432 1.46097 1.50098 1.22621 0.90046 0.95973 1.03906 1.60268 1.05813 1.16515 1.46211 1.20503 0.94854 0.87032 0.92304 1.23260 0.95702 1.03070 0.97674 1.23299 1.04636 0.98820 0.96005 1.23330 0.94628 1.00713 1.03555 1.22316 1.01170 0.99900 0.94691 1.22506 0.81345 1.00501 0.96819 1.87861 1.19341 1.79547 1.43807 1.22496 0.97028 0.96588 0.85009 1.22126 0.94002 1.01642 0.99398 0.92256 0.95754 0.96302 0.77205 0.88141 0.90008 0.82684 0.87663 0.87899 0.88624 0.88789 0.87654 0.90559 0.90738 0.89552 0.91699 0.89694 0.91409 0.90889 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.54 -14.81 9.83 -34.44 -0.34 -15.15 16 8 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 9 C 0.22 5.42 4.50 -5.20 -0.02 5.40 16 10 N -0.71 -13.93 5.55 -61.48 -0.34 -14.27 16 11 C 0.50 9.08 7.88 -10.99 -0.09 8.99 16 12 O -0.54 -12.08 16.34 5.55 0.09 -11.99 16 13 C 0.01 0.08 3.79 -4.98 -0.02 0.06 16 14 N -0.65 -7.87 4.22 -101.03 -0.43 -8.30 16 15 C 0.14 1.39 0.54 -131.41 -0.07 1.32 16 16 C -0.18 -1.53 5.25 -90.62 -0.48 -2.00 16 17 C -0.19 -1.75 9.04 -26.69 -0.24 -2.00 16 18 C -0.19 -1.60 8.88 -26.69 -0.24 -1.83 16 19 C -0.14 -1.37 4.18 -26.59 -0.11 -1.48 16 20 C 0.07 0.73 6.68 37.21 0.25 0.98 16 21 O -0.39 -4.79 10.77 -35.23 -0.38 -5.17 16 22 C 0.07 0.70 6.68 37.21 0.25 0.95 16 23 C -0.13 -1.22 5.07 -26.59 -0.13 -1.36 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 26 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 27 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 28 H 0.10 1.16 5.72 -51.93 -0.30 0.87 16 29 H 0.08 0.92 3.29 -51.93 -0.17 0.75 16 30 H 0.35 4.43 7.33 -39.29 -0.29 4.14 16 31 H 0.11 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.10 1.10 4.81 -51.93 -0.25 0.85 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.11 0.93 4.96 -51.93 -0.26 0.67 16 36 H 0.08 0.69 5.11 -51.93 -0.27 0.43 16 37 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 327.85 15.07 4.94 4.94 Total: -1.00 -31.68 327.85 -7.75 -39.42 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.40 Total: 8.24 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.34 Total: -4.02 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.01 Total: -48.19 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.29 Total: -17.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.68 -7.75 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340932778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.282 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds