Wall clock time and date at job start Tue Mar 31 2020 05:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46962 * 2 1 4 4 H 1.08997 * 109.47038 * 304.99784 * 3 2 1 5 5 C 1.50697 * 109.46850 * 184.99345 * 3 2 1 6 6 H 1.07999 * 120.00401 * 239.99552 * 5 3 2 7 7 C 1.37881 * 119.99928 * 60.00177 * 5 3 2 8 8 N 1.31510 * 119.99963 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00052 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47058 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47082 * 120.00000 * 9 7 5 12 12 H 1.48498 * 109.47137 * 240.00179 * 9 7 5 13 13 O 1.45205 * 109.47074 * 64.99504 * 3 2 1 14 14 C 1.34226 * 117.00134 * 269.99955 * 13 3 2 15 15 O 1.20830 * 119.99866 * 359.97438 * 14 13 3 16 16 C 1.50694 * 119.99972 * 180.02562 * 14 13 3 17 17 H 1.08992 * 109.55706 * 299.79446 * 16 14 13 18 18 C 1.53159 * 109.55602 * 60.00099 * 16 14 13 19 19 C 1.53042 * 109.41176 * 178.57012 * 18 16 14 20 20 O 1.43039 * 109.44992 * 300.67413 * 19 18 16 21 21 C 1.42594 * 113.84596 * 58.71894 * 20 19 18 22 22 C 1.53428 * 113.56695 * 73.88682 * 21 20 19 23 23 C 1.53840 * 86.97602 * 89.47866 * 22 21 20 24 24 C 1.53399 * 113.61767 * 171.80009 * 21 20 19 25 25 C 1.52804 * 112.94517 * 302.90811 * 21 20 19 26 26 H 1.08996 * 109.47426 * 300.00479 * 1 2 3 27 27 H 1.09003 * 109.46618 * 60.00423 * 1 2 3 28 28 H 1.08998 * 109.46823 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47426 * 239.99521 * 2 1 3 30 30 H 1.09003 * 109.46618 * 119.99577 * 2 1 3 31 31 H 0.97001 * 119.99998 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47997 * 58.58523 * 18 16 14 33 33 H 1.08998 * 109.48845 * 298.56232 * 18 16 14 34 34 H 1.09002 * 109.47651 * 60.67081 * 19 18 16 35 35 H 1.09005 * 109.47596 * 180.68267 * 19 18 16 36 36 H 1.08998 * 113.63084 * 204.00016 * 22 21 20 37 37 H 1.09003 * 113.63124 * 334.96148 * 22 21 20 38 38 H 1.09006 * 113.60548 * 270.60023 * 23 22 21 39 39 H 1.08995 * 113.68260 * 139.73589 * 23 22 21 40 40 H 1.08998 * 113.62772 * 25.09375 * 24 21 20 41 41 H 1.08991 * 113.63222 * 155.95666 * 24 21 20 42 42 H 1.09003 * 109.56371 * 294.10466 * 25 21 20 43 43 H 1.08996 * 109.66160 * 173.81730 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8889 0.6524 7 6 4.1434 0.8784 -1.2278 8 7 3.4064 0.3366 -2.1727 9 14 6.0050 0.8812 -1.3814 10 1 6.5987 1.5473 -0.1944 11 1 6.4971 -0.5176 -1.4626 12 1 6.3992 1.6166 -2.6098 13 8 1.6558 2.0917 1.2407 14 6 0.4726 2.7255 1.2559 15 8 -0.2189 2.7377 0.2651 16 6 0.0073 3.4226 2.5082 17 1 -0.0754 2.6992 3.3192 18 6 1.0135 4.5113 2.8930 19 6 0.5199 5.2407 4.1445 20 8 -0.7589 5.8252 3.8820 21 6 -1.7549 4.8819 3.4929 22 6 -2.2665 4.0166 4.6520 23 6 -3.3264 5.1060 4.8900 24 6 -3.1656 5.4783 3.4059 25 6 -1.3589 4.0723 2.2589 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8295 -0.0613 -2.9496 32 1 1.1112 5.2223 2.0725 33 1 1.9825 4.0554 3.0962 34 1 0.4333 4.5318 4.9680 35 1 1.2293 6.0238 4.4123 36 1 -2.6851 3.0621 4.3330 37 1 -1.5529 3.9153 5.4697 38 1 -3.0009 5.8896 5.5743 39 1 -4.3120 4.7114 5.1367 40 1 -3.1751 6.5525 3.2214 41 1 -3.8321 4.9286 2.7415 42 1 -1.2968 4.7324 1.3937 43 1 -2.1031 3.2976 2.0743 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343411351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:35 Heat of formation + Delta-G solvation = -130.602689 kcal Electronic energy + Delta-G solvation = -23437.585852 eV Core-core repulsion = 20061.962534 eV Total energy + Delta-G solvation = -3375.623318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.78731 -39.42339 -36.38523 -35.83307 -33.81332 -33.35824 -31.33821 -29.74194 -27.44769 -25.95609 -25.77177 -23.37020 -23.21262 -21.83971 -20.25417 -19.27991 -19.12708 -17.16672 -16.63420 -16.16360 -16.06552 -15.69681 -14.97655 -14.84814 -14.49619 -14.39261 -13.92846 -13.65674 -13.18047 -12.87719 -12.76490 -12.53131 -12.13032 -11.71295 -11.56145 -11.48433 -11.31686 -11.16222 -11.04352 -10.97875 -10.95879 -10.88267 -10.67700 -10.60165 -10.28659 -10.08559 -9.80290 -9.63891 -9.39191 -9.24039 -8.80297 -8.46706 -6.19757 -4.26761 3.00441 3.22158 3.29077 3.33548 3.54329 3.64867 4.31029 4.37521 4.46913 4.65773 4.78526 4.81932 4.94666 5.04130 5.12276 5.23163 5.33763 5.43471 5.54847 5.57398 5.65267 5.74746 5.79128 5.81351 5.86250 5.95940 6.12491 6.15357 6.20361 6.21945 6.28235 6.32867 6.44906 6.85780 6.95778 7.15614 7.20775 7.26058 7.60997 7.73031 7.95051 8.15342 8.64349 8.89635 9.38695 10.87063 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029560 B = 0.004148 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.986938 B = 6749.313936 C = 7341.970932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.220 3.780 4 H 0.046 0.954 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.355 6.355 14 C 0.456 3.544 15 O -0.516 6.516 16 C -0.083 4.083 17 H 0.100 0.900 18 C -0.147 4.147 19 C 0.064 3.936 20 O -0.358 6.358 21 C 0.094 3.906 22 C -0.166 4.166 23 C -0.134 4.134 24 C -0.124 4.124 25 C -0.116 4.116 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.109 0.891 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 7.278 12.981 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.064 0.936 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.271 6.271 14 C 0.299 3.701 15 O -0.406 6.406 16 C -0.102 4.102 17 H 0.118 0.882 18 C -0.185 4.185 19 C -0.012 4.012 20 O -0.276 6.276 21 C 0.054 3.946 22 C -0.204 4.204 23 C -0.172 4.172 24 C -0.162 4.162 25 C -0.153 4.153 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.127 0.873 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.991 7.353 12.494 17.606 hybrid contribution 1.044 -0.511 -0.365 1.219 sum -8.947 6.841 12.129 16.552 Atomic orbital electron populations 1.21855 0.98420 0.98950 1.00705 1.22019 0.92603 0.99430 1.03330 1.20666 0.95004 0.88739 0.78781 0.93603 1.21080 0.89709 1.38844 1.06211 0.91327 1.24888 0.99220 0.94777 0.95081 1.69897 1.35291 1.37895 1.09475 0.86245 0.83945 0.77888 0.78221 1.19487 1.20707 1.20755 1.86463 1.34251 1.62353 1.44026 1.23148 0.80839 0.76815 0.89312 1.90599 1.55579 1.58584 1.35812 1.21023 0.96140 0.97603 0.95426 0.88173 1.22140 0.99359 0.97599 0.99374 1.22606 0.84607 0.98128 0.95895 1.87887 1.19042 1.32710 1.87997 1.22244 0.88905 0.90212 0.93203 1.23520 0.99256 0.98383 0.99195 1.22780 0.98939 0.98735 0.96723 1.22946 0.93843 1.02087 0.97278 1.21911 0.95511 0.99737 0.98184 0.95036 0.92820 0.94836 0.87348 0.94025 0.92451 0.90437 0.89012 0.92816 0.88325 0.89211 0.90981 0.89933 0.91436 0.90486 0.88709 0.90008 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.57 37.16 0.32 -2.80 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.52 16 3 C 0.22 5.85 2.25 -27.88 -0.06 5.78 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.50 8.90 -34.44 -0.31 -14.80 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.03 11.29 55.43 0.63 -24.41 16 9 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 13 O -0.35 -8.31 9.74 -39.25 -0.38 -8.69 16 14 C 0.46 9.35 5.72 36.00 0.21 9.56 16 15 O -0.52 -11.81 13.09 -18.75 -0.25 -12.05 16 16 C -0.08 -1.25 2.64 -91.53 -0.24 -1.49 16 17 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 18 C -0.15 -2.00 5.30 -26.63 -0.14 -2.14 16 19 C 0.06 0.71 6.73 37.18 0.25 0.96 16 20 O -0.36 -4.50 10.45 -35.23 -0.37 -4.87 16 21 C 0.09 1.09 1.03 -90.29 -0.09 1.00 16 22 C -0.17 -1.63 7.11 -26.07 -0.19 -1.81 16 23 C -0.13 -1.19 8.02 -25.85 -0.21 -1.40 16 24 C -0.12 -1.23 7.47 -26.08 -0.19 -1.42 16 25 C -0.12 -1.59 3.90 -26.67 -0.10 -1.69 16 26 H 0.03 0.66 6.06 -51.93 -0.31 0.34 16 27 H 0.05 1.24 7.80 -51.93 -0.40 0.83 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.11 2.92 5.95 -51.93 -0.31 2.62 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.53 7.21 -51.93 -0.37 0.16 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.83 8.02 -51.93 -0.42 0.42 16 37 H 0.07 0.69 7.26 -51.93 -0.38 0.31 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 42 H 0.08 1.25 7.97 -51.93 -0.41 0.84 16 43 H 0.08 1.09 8.05 -51.93 -0.42 0.68 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -30.11 336.76 -8.49 -38.59 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.17 Total: 2.59 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -1.00 Total: -12.16 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.63 Total: -24.41 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -1.00 Total: -25.62 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.11 -8.49 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343411351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.011 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds