Wall clock time and date at job start Tue Mar 31 2020 05:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47545 * 2 1 4 4 H 1.08999 * 109.47706 * 54.40945 * 3 2 1 5 5 C 1.50700 * 109.47396 * 174.41729 * 3 2 1 6 6 H 1.07996 * 119.99984 * 25.68302 * 5 3 2 7 7 C 1.37881 * 119.99664 * 205.68826 * 5 3 2 8 8 N 1.31509 * 120.00097 * 353.02622 * 7 5 3 9 9 Si 1.86803 * 119.99616 * 173.02842 * 7 5 3 10 10 H 1.48503 * 109.47030 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47225 * 299.99651 * 9 7 5 12 12 H 1.48507 * 109.47336 * 59.99980 * 9 7 5 13 13 O 1.45207 * 109.47050 * 294.41408 * 3 2 1 14 14 C 1.34234 * 116.99951 * 89.99835 * 13 3 2 15 15 O 1.20822 * 119.99983 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99865 * 180.02562 * 14 13 3 17 17 H 1.08993 * 109.54748 * 299.79863 * 16 14 13 18 18 C 1.53152 * 109.55051 * 59.99941 * 16 14 13 19 19 C 1.53052 * 109.38788 * 178.47290 * 18 16 14 20 20 O 1.43045 * 109.45067 * 300.66813 * 19 18 16 21 21 C 1.42586 * 113.85360 * 58.74233 * 20 19 18 22 22 C 1.53404 * 113.61835 * 171.83709 * 21 20 19 23 23 C 1.53846 * 86.96771 * 220.08447 * 22 21 20 24 24 C 1.53415 * 113.57802 * 73.89706 * 21 20 19 25 25 C 1.52816 * 112.92502 * 302.90598 * 21 20 19 26 26 H 1.08999 * 109.47317 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47280 * 300.00358 * 1 2 3 28 28 H 1.08998 * 109.47165 * 60.00158 * 1 2 3 29 29 H 1.09001 * 109.47020 * 239.99226 * 2 1 3 30 30 H 1.09004 * 109.46725 * 119.99927 * 2 1 3 31 31 H 0.96998 * 120.00256 * 354.60122 * 8 7 5 32 32 H 1.08997 * 109.48397 * 298.44764 * 18 16 14 33 33 H 1.08998 * 109.48794 * 58.48206 * 18 16 14 34 34 H 1.08991 * 109.47396 * 60.66700 * 19 18 16 35 35 H 1.08998 * 109.47261 * 180.67527 * 19 18 16 36 36 H 1.09001 * 113.62780 * 334.60419 * 22 21 20 37 37 H 1.08997 * 113.63558 * 105.56227 * 22 21 20 38 38 H 1.09000 * 113.60909 * 270.59028 * 23 22 21 39 39 H 1.09013 * 113.67662 * 139.73533 * 23 22 21 40 40 H 1.08996 * 113.63140 * 254.46677 * 24 21 20 41 41 H 1.08993 * 113.63337 * 25.34884 * 24 21 20 42 42 H 1.08994 * 109.56126 * 294.09271 * 25 21 20 43 43 H 1.09002 * 109.55664 * 173.75859 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5974 1.9844 0.8357 5 6 3.5407 1.4446 0.1382 6 1 4.1143 0.5898 -0.1883 7 6 4.1813 2.5379 0.6817 8 7 3.5017 3.6308 0.9525 9 14 6.0145 2.4668 1.0334 10 1 6.4581 3.7604 1.6122 11 1 6.2913 1.3725 1.9983 12 1 6.7514 2.2107 -0.2303 13 8 1.6679 2.0873 -1.2466 14 6 0.4849 2.7211 -1.2754 15 8 -0.2161 2.7368 -0.2915 16 6 0.0313 3.4130 -2.5351 17 1 0.7482 4.1889 -2.8033 18 6 -0.0693 2.3925 -3.6726 19 6 -0.5667 3.0917 -4.9399 20 8 -1.8482 3.6760 -4.6899 21 6 -1.8514 4.6255 -3.6262 22 6 -3.1731 5.3922 -3.4907 23 6 -2.3239 6.6427 -3.2045 24 6 -1.1929 5.9614 -3.9941 25 6 -1.3478 4.0425 -2.3064 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5140 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 2.5679 3.6967 0.6984 32 1 0.9127 1.9576 -3.8588 33 1 -0.7688 1.6046 -3.3934 34 1 0.1390 3.8718 -5.2253 35 1 -0.6502 2.3642 -5.7473 36 1 -3.7404 5.4524 -4.4195 37 1 -3.7791 5.0721 -2.6431 38 1 -2.0956 6.7829 -2.1479 39 1 -2.7036 7.5477 -3.6790 40 1 -0.2066 6.0990 -3.5511 41 1 -1.2117 6.1783 -5.0620 42 1 -2.0432 3.2803 -1.9552 43 1 -1.2681 4.8363 -1.5637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343411352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:38 Heat of formation + Delta-G solvation = -140.648409 kcal Electronic energy + Delta-G solvation = -23762.889663 eV Core-core repulsion = 20386.830730 eV Total energy + Delta-G solvation = -3376.058933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.74265 -39.30948 -36.46415 -35.83614 -33.70697 -33.15143 -32.06086 -29.49611 -27.10662 -25.89762 -25.36756 -23.82855 -23.16240 -21.86764 -20.50340 -19.41239 -18.55351 -17.32724 -16.95138 -16.54526 -15.98652 -15.54923 -15.13920 -14.81764 -14.44789 -13.85986 -13.68633 -13.48458 -13.27741 -13.04850 -12.95715 -12.54185 -12.33720 -11.93952 -11.69641 -11.37202 -11.26244 -11.20241 -10.98622 -10.89315 -10.85856 -10.82592 -10.76583 -10.48814 -10.20912 -10.09107 -10.04026 -9.59392 -9.31421 -9.18645 -8.68820 -8.56380 -6.65138 -4.45300 3.13153 3.31743 3.33640 3.53971 3.69860 3.76520 4.35152 4.47034 4.48896 4.68062 4.73351 4.89170 4.97365 5.08688 5.16301 5.30727 5.44768 5.50809 5.61212 5.63685 5.68970 5.80161 5.80776 5.84890 5.85642 5.90058 5.93719 5.99613 6.12272 6.18532 6.22541 6.28243 6.36121 6.53047 6.66638 6.76676 6.88820 7.10060 7.26620 7.71674 7.95341 8.20339 8.54916 8.91029 9.34480 10.71386 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.004856 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.034325 B = 5765.037491 C = 6242.183638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.189 3.811 4 H 0.050 0.950 5 C -0.589 4.589 6 H 0.062 0.938 7 C 0.029 3.971 8 N -0.881 5.881 9 Si 1.074 2.926 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.283 1.283 13 O -0.357 6.357 14 C 0.454 3.546 15 O -0.527 6.527 16 C -0.088 4.088 17 H 0.100 0.900 18 C -0.144 4.144 19 C 0.064 3.936 20 O -0.369 6.369 21 C 0.093 3.907 22 C -0.120 4.120 23 C -0.139 4.139 24 C -0.165 4.165 25 C -0.105 4.105 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.274 0.726 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 2.244 -10.336 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C 0.138 3.862 4 H 0.068 0.932 5 C -0.625 4.625 6 H 0.080 0.920 7 C -0.180 4.180 8 N -0.515 5.515 9 Si 0.900 3.100 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.209 1.209 13 O -0.273 6.273 14 C 0.297 3.703 15 O -0.418 6.418 16 C -0.108 4.108 17 H 0.118 0.882 18 C -0.182 4.182 19 C -0.012 4.012 20 O -0.288 6.288 21 C 0.053 3.947 22 C -0.157 4.157 23 C -0.177 4.177 24 C -0.202 4.202 25 C -0.143 4.143 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.189 3.008 -9.459 12.868 hybrid contribution -1.012 -0.855 -0.495 1.414 sum -9.201 2.153 -9.954 13.725 Atomic orbital electron populations 1.21862 0.97116 0.99497 1.01831 1.21832 0.94156 0.98714 1.01467 1.20907 0.95244 0.88360 0.81720 0.93164 1.22068 0.90501 1.05189 1.44724 0.92013 1.26200 1.07091 0.91917 0.92786 1.70756 1.11642 1.27341 1.41752 0.83486 0.73264 0.76413 0.76819 1.20446 1.20895 1.20950 1.87014 1.33230 1.61923 1.45132 1.23251 0.81201 0.76959 0.88895 1.90551 1.55513 1.59178 1.36599 1.21083 0.98059 0.98501 0.93140 0.88174 1.22110 1.03483 0.98124 0.94476 1.22546 0.85315 0.96755 0.96592 1.87913 1.30609 1.58178 1.52094 1.22729 0.97524 0.86926 0.87526 1.22989 0.95454 0.94755 1.02552 1.22725 0.96958 0.97088 1.00892 1.23542 0.99083 0.96532 1.01061 1.21695 0.95383 1.01431 0.95777 0.94306 0.92617 0.93791 0.92783 0.91368 0.91460 0.89291 0.90834 0.92878 0.88674 0.89225 0.90635 0.89666 0.90888 0.90950 0.89421 0.90020 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.57 37.16 0.32 -2.60 16 2 C -0.12 -2.75 5.62 -26.74 -0.15 -2.90 16 3 C 0.19 4.90 1.71 -27.89 -0.05 4.86 16 4 H 0.05 1.45 6.16 -51.93 -0.32 1.13 16 5 C -0.59 -16.35 8.69 -34.44 -0.30 -16.65 16 6 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 7 C 0.03 0.80 5.45 -17.82 -0.10 0.71 16 8 N -0.88 -26.34 13.56 55.43 0.75 -25.58 16 9 Si 1.07 24.13 29.91 -169.99 -5.08 19.04 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 O -0.36 -8.78 9.73 -39.27 -0.38 -9.16 16 14 C 0.45 9.90 5.74 36.01 0.21 10.11 16 15 O -0.53 -12.50 13.08 -18.75 -0.25 -12.74 16 16 C -0.09 -1.49 2.63 -91.53 -0.24 -1.73 16 17 H 0.10 1.64 7.62 -51.93 -0.40 1.25 16 18 C -0.14 -2.10 5.30 -26.63 -0.14 -2.24 16 19 C 0.06 0.79 6.74 37.18 0.25 1.04 16 20 O -0.37 -5.04 10.53 -35.23 -0.37 -5.41 16 21 C 0.09 1.19 1.16 -90.29 -0.10 1.09 16 22 C -0.12 -1.31 7.50 -26.08 -0.20 -1.51 16 23 C -0.14 -1.42 7.73 -25.85 -0.20 -1.62 16 24 C -0.16 -1.87 6.91 -26.08 -0.18 -2.05 16 25 C -0.11 -1.59 3.81 -26.66 -0.10 -1.69 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 1.17 7.83 -51.93 -0.41 0.76 16 28 H 0.04 0.89 6.05 -51.93 -0.31 0.58 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.27 8.40 6.97 -40.82 -0.28 8.12 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.61 7.84 -51.93 -0.41 0.20 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.08 0.89 7.61 -51.93 -0.40 0.49 16 39 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.07 0.86 7.57 -51.93 -0.39 0.47 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.32 7.97 -51.93 -0.41 0.91 16 43 H 0.08 1.28 7.31 -51.93 -0.38 0.90 16 LS Contribution 337.79 15.07 5.09 5.09 Total: -1.00 -30.99 337.79 -8.36 -39.35 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.14 Total: 4.60 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.98 Total: -15.18 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.75 Total: -25.58 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.00 Total: -27.32 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.08 Total: 19.04 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.99 -8.36 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343411352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.298 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds