Wall clock time and date at job start Tue Mar 31 2020 05:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 102.99930 * 2 1 4 4 H 1.08996 * 109.46839 * 55.00233 * 3 2 1 5 5 C 1.53002 * 109.46960 * 295.00156 * 3 2 1 6 6 C 1.52997 * 109.46817 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47127 * 60.00361 * 6 5 3 8 8 C 1.52999 * 109.46626 * 299.99539 * 7 6 5 9 9 C 1.52996 * 109.47102 * 175.00451 * 3 2 1 10 10 H 1.09000 * 109.47380 * 59.99394 * 9 3 2 11 11 N 1.46905 * 109.46983 * 300.00237 * 9 3 2 12 12 C 1.46897 * 111.00157 * 155.00111 * 11 9 3 13 13 C 1.53006 * 109.47041 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.46715 * 55.00291 * 13 12 11 15 15 C 1.47198 * 109.47086 * 294.99994 * 13 12 11 16 16 N 6.46912 * 129.78157 * 64.93060 * 2 1 3 17 17 C 1.53002 * 109.46957 * 175.00062 * 13 12 11 18 18 C 1.50703 * 109.47096 * 185.00125 * 17 13 12 19 19 H 1.08002 * 119.99715 * 359.97438 * 18 17 13 20 20 C 1.37868 * 120.00036 * 179.97438 * 18 17 13 21 21 N 1.31514 * 120.00302 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00187 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46954 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47343 * 119.99924 * 22 20 18 25 25 H 1.48503 * 109.47210 * 240.00297 * 22 20 18 26 26 H 1.09003 * 109.47548 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.47121 * 299.99662 * 1 2 3 28 28 H 1.09003 * 109.47736 * 59.99748 * 1 2 3 29 29 H 1.09002 * 109.47070 * 60.00128 * 5 3 2 30 30 H 1.08996 * 109.47407 * 299.99729 * 5 3 2 31 31 H 1.09001 * 109.47502 * 300.00518 * 6 5 3 32 32 H 1.09001 * 109.47289 * 180.02562 * 6 5 3 33 33 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 34 34 H 1.09000 * 109.47050 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.46719 * 180.02562 * 8 7 6 36 36 H 1.08993 * 109.47839 * 299.99931 * 8 7 6 37 37 H 1.00906 * 110.99817 * 278.95501 * 11 9 3 38 38 H 1.09000 * 109.47241 * 299.99901 * 12 11 9 39 39 H 1.09006 * 109.47335 * 59.99935 * 12 11 9 40 40 H 1.09006 * 109.47174 * 305.00128 * 17 13 12 41 41 H 1.08996 * 109.47151 * 64.99682 * 17 13 12 42 42 H 0.96997 * 120.00617 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 2.0863 3.8925 -1.3071 7 6 3.6012 4.0667 -1.1811 8 6 4.0804 3.4327 0.1262 9 6 3.7369 1.9412 0.1256 10 1 4.2295 1.4546 -0.7162 11 7 4.1972 1.3323 1.3808 12 6 5.6103 0.9417 1.2893 13 6 6.0524 0.3135 2.6125 14 1 5.3881 -0.5139 2.8618 15 6 5.9967 1.3262 3.6793 16 7 5.9533 2.1065 4.5031 17 6 7.4852 -0.2060 2.4768 18 6 7.8775 -0.9328 3.7373 19 1 7.1753 -1.0155 4.5538 20 6 9.1327 -1.4921 3.8483 21 7 9.9880 -1.3910 2.8544 22 14 9.6193 -2.3924 5.4110 23 1 8.4866 -2.3653 6.3710 24 1 9.9581 -3.8012 5.0857 25 1 10.7997 -1.7270 6.0186 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3635 0.5139 -0.8900 29 1 0.6634 2.2779 -1.3969 30 1 2.2353 1.9151 -2.1492 31 1 1.5934 4.3788 -0.4652 32 1 1.7444 4.3444 -2.2382 33 1 4.0940 3.5805 -2.0229 34 1 3.8460 5.1289 -1.1814 35 1 5.1595 3.5572 0.2161 36 1 3.5876 3.9189 0.9680 37 1 4.0434 1.9530 2.1614 38 1 5.7359 0.2185 0.4835 39 1 6.2184 1.8229 1.0848 40 1 7.5452 -0.8894 1.6297 41 1 8.1620 0.6329 2.3154 42 1 10.8710 -1.7848 2.9323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353363899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:50 Heat of formation + Delta-G solvation = -6.702923 kcal Electronic energy + Delta-G solvation = -19954.630678 eV Core-core repulsion = 17059.425679 eV Total energy + Delta-G solvation = -2895.204999 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.18920 -36.94819 -34.76937 -33.47258 -31.67900 -31.20497 -28.88416 -28.83083 -26.05444 -23.20899 -22.79985 -21.96409 -21.51752 -20.16957 -16.90564 -16.55422 -16.41721 -15.56998 -15.21666 -14.72096 -14.58896 -14.34593 -14.17400 -13.59177 -13.52941 -13.30943 -13.23605 -12.93648 -12.56140 -12.53008 -12.08656 -12.02567 -11.70496 -11.58891 -11.35719 -11.28280 -11.07639 -10.93113 -10.82076 -10.72383 -10.56470 -10.40258 -10.22488 -9.68833 -9.48688 -9.18076 -8.43155 -8.26756 -7.46419 -6.06882 -4.09628 1.72439 2.66370 3.30707 3.38707 3.43749 3.59913 3.65599 4.07319 4.42462 4.44141 4.65024 4.74065 4.82870 4.90128 4.91990 5.02746 5.07282 5.15224 5.19852 5.23199 5.31310 5.46922 5.51321 5.57552 5.63261 5.75073 5.77452 5.80127 5.84365 5.87026 6.02122 6.12486 6.22012 6.42321 6.59646 7.12118 7.45453 7.48521 7.56641 7.88645 8.26443 8.43112 8.95231 9.55790 11.04113 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022304 B = 0.003716 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.106943 B = 7533.047270 C = 8056.576818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.216 6.216 3 C -0.043 4.043 4 H 0.082 0.918 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.116 4.116 8 C -0.147 4.147 9 C 0.108 3.892 10 H 0.089 0.911 11 N -0.678 5.678 12 C 0.070 3.930 13 C 0.007 3.993 14 H 0.112 0.888 15 C 0.243 3.757 16 N -0.479 5.479 17 C 0.032 3.968 18 C -0.524 4.524 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.284 1.284 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.338 0.662 38 H 0.091 0.909 39 H 0.034 0.966 40 H 0.040 0.960 41 H 0.023 0.977 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.822 7.775 -12.013 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.013 5.987 3 C -0.173 4.173 4 H 0.100 0.900 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.154 4.154 8 C -0.187 4.187 9 C -0.003 4.003 10 H 0.107 0.893 11 N -0.307 5.307 12 C -0.060 4.060 13 C -0.015 4.015 14 H 0.130 0.870 15 C -0.074 4.074 16 N -0.156 5.156 17 C -0.006 4.006 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.210 1.210 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.156 0.844 38 H 0.109 0.891 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.285 7.320 -10.940 21.727 hybrid contribution 0.002 1.099 0.711 1.309 sum -17.283 8.419 -10.229 21.777 Atomic orbital electron populations 1.23439 0.96896 1.06010 1.04176 1.87268 1.03920 1.09830 1.97645 1.23225 0.99368 0.94549 1.00150 0.89994 1.21893 1.00812 0.95698 0.96966 1.21568 0.96387 0.95845 1.01826 1.21488 0.95615 1.00632 0.97710 1.22304 1.01765 0.96247 0.98415 1.21299 0.92199 0.92640 0.94183 0.89308 1.60648 1.19865 1.46142 1.04046 1.22094 0.86548 0.99429 0.97916 1.19330 1.03462 0.92272 0.86435 0.86989 1.29322 0.90942 0.93182 0.93905 1.81005 1.11216 1.12548 1.10866 1.19164 0.86294 0.96651 0.98515 1.21190 0.99161 1.34941 1.00949 0.92451 1.24945 0.96476 0.96156 0.96399 1.69946 1.06717 1.45156 1.31275 0.86547 0.78592 0.79488 0.83530 1.19665 1.20822 1.21044 0.88480 0.90992 0.91201 0.91952 0.90574 0.92068 0.91714 0.91578 0.91893 0.91123 0.91737 0.84387 0.89058 0.94818 0.94188 0.95840 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 10.45 101.05 1.06 -0.10 16 2 S -0.22 -2.51 21.38 -107.50 -2.30 -4.81 16 3 C -0.04 -0.43 2.35 -26.73 -0.06 -0.50 16 4 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 5 C -0.11 -0.92 5.11 -26.73 -0.14 -1.05 16 6 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 7 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 8 C -0.15 -1.44 5.17 -26.71 -0.14 -1.58 16 9 C 0.11 1.18 1.91 -67.69 -0.13 1.06 16 10 H 0.09 1.02 7.80 -51.93 -0.40 0.62 16 11 N -0.68 -8.96 5.78 -106.69 -0.62 -9.57 16 12 C 0.07 1.04 4.92 -3.82 -0.02 1.02 16 13 C 0.01 0.13 2.42 -93.40 -0.23 -0.10 16 14 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 15 C 0.24 4.94 12.97 -20.78 -0.27 4.67 16 16 N -0.48 -10.47 18.53 42.13 0.78 -9.69 16 17 C 0.03 0.76 4.42 -27.88 -0.12 0.63 16 18 C -0.52 -14.12 8.60 -34.44 -0.30 -14.42 16 19 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 22 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 26 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 28 H 0.07 0.50 7.14 -51.92 -0.37 0.13 16 29 H 0.06 0.46 6.92 -51.93 -0.36 0.10 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.76 7.46 -51.93 -0.39 0.37 16 36 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 37 H 0.34 4.64 7.55 -39.29 -0.30 4.35 16 38 H 0.09 1.32 8.06 -51.93 -0.42 0.91 16 39 H 0.03 0.50 7.44 -51.93 -0.39 0.11 16 40 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -29.49 351.42 -9.11 -38.60 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.23 Total: -0.49 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.76 Total: -10.84 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.90 Total: -44.28 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.30 Total: -4.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.49 -9.11 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353363899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.893 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds