Wall clock time and date at job start Tue Mar 31 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00156 * 2 1 4 4 H 1.48501 * 109.47023 * 240.00542 * 3 2 1 5 5 H 1.48504 * 109.47075 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47352 * 119.99921 * 3 2 1 7 7 C 1.38813 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00080 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.47027 * 125.65027 * 359.97374 * 9 7 2 11 11 C 1.54320 * 107.27212 * 178.97703 * 10 9 7 12 12 C 1.55159 * 102.94295 * 337.81007 * 11 10 9 13 13 H 1.09000 * 110.99914 * 153.61116 * 12 11 10 14 14 N 1.46499 * 111.00291 * 277.42570 * 12 11 10 15 15 C 1.34777 * 119.99665 * 202.09919 * 14 12 11 16 16 O 1.21283 * 119.99990 * 359.71991 * 15 14 12 17 17 C 1.50698 * 119.99538 * 179.72653 * 15 14 12 18 18 C 1.52999 * 109.47004 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47303 * 179.97438 * 18 17 15 20 20 H 1.08995 * 109.82803 * 305.56743 * 19 18 17 21 21 C 1.54390 * 109.83082 * 184.58737 * 19 18 17 22 22 C 1.55305 * 102.25038 * 219.13172 * 21 19 18 23 23 C 1.54946 * 100.94229 * 34.13594 * 22 21 19 24 24 O 1.43243 * 109.82683 * 66.45778 * 19 18 17 25 25 C 1.47530 * 125.63576 * 180.02562 * 9 7 2 26 26 H 0.97009 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.88115 * 59.56235 * 10 9 7 28 28 H 1.09002 * 110.00915 * 298.46868 * 10 9 7 29 29 H 1.09000 * 110.72210 * 219.44440 * 11 10 9 30 30 H 1.09005 * 110.87008 * 96.24322 * 11 10 9 31 31 H 0.97001 * 119.99790 * 21.81632 * 14 12 11 32 32 H 1.09003 * 109.47112 * 299.99065 * 17 15 14 33 33 H 1.08993 * 109.47916 * 59.99687 * 17 15 14 34 34 H 1.09000 * 109.47527 * 299.99994 * 18 17 15 35 35 H 1.09007 * 109.47302 * 59.99534 * 18 17 15 36 36 H 1.09000 * 110.84927 * 337.32301 * 21 19 18 37 37 H 1.09002 * 110.84505 * 100.94652 * 21 19 18 38 38 H 1.08998 * 111.13023 * 276.21335 * 22 21 19 39 39 H 1.09005 * 111.16241 * 152.06869 * 22 21 19 40 40 H 1.09010 * 110.30874 * 204.63780 * 23 22 21 41 41 H 1.09000 * 110.31101 * 82.47272 * 23 22 21 42 42 H 1.08997 * 110.37586 * 85.26716 * 25 9 7 43 43 H 1.09001 * 110.40722 * 322.91085 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4486 -4.0441 -0.0262 12 6 0.8514 -4.6560 -0.6119 13 1 0.9830 -5.6855 -0.2788 14 7 0.8570 -4.5755 -2.0746 15 6 1.6336 -5.4110 -2.7925 16 8 2.3316 -6.2261 -2.2273 17 6 1.6347 -5.3322 -4.2974 18 6 2.5946 -6.3812 -4.8623 19 6 2.5953 -6.3017 -6.3902 20 1 1.5760 -6.3920 -6.7656 21 6 3.4720 -7.4310 -6.9730 22 6 4.1824 -6.7193 -8.1566 23 6 4.3483 -5.2895 -7.5830 24 8 3.1597 -5.0544 -6.8116 25 6 1.9341 -3.7319 -0.0005 26 1 -0.4850 0.8401 0.0004 27 1 -0.5583 -2.0521 -0.8827 28 1 -0.5561 -2.0840 0.9015 29 1 -1.2991 -4.2514 -0.6756 30 1 -0.6328 -4.4205 0.9801 31 1 0.2987 -3.9236 -2.5266 32 1 0.6285 -5.5210 -4.6719 33 1 1.9580 -4.3391 -4.6092 34 1 3.6007 -6.1922 -4.4878 35 1 2.2717 -7.3746 -4.5506 36 1 4.1975 -7.7780 -6.2372 37 1 2.8553 -8.2558 -7.3301 38 1 3.5536 -6.7149 -9.0469 39 1 5.1510 -7.1739 -8.3650 40 1 4.4236 -4.5635 -8.3927 41 1 5.2302 -5.2380 -6.9445 42 1 2.1674 -4.0429 1.0177 43 1 2.8332 -3.7420 -0.6166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494743270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:02 Heat of formation + Delta-G solvation = -70.967139 kcal Electronic energy + Delta-G solvation = -22471.063336 eV Core-core repulsion = 19130.318760 eV Total energy + Delta-G solvation = -3340.744576 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.88018 -39.25373 -37.19039 -33.65618 -33.46867 -32.30574 -31.71623 -29.30463 -28.67519 -27.11077 -24.73512 -24.03760 -21.98442 -21.12822 -20.26518 -19.99338 -19.62751 -17.17290 -17.09278 -16.63805 -15.99327 -15.64691 -15.23245 -14.62768 -14.49218 -13.91935 -13.81509 -13.69914 -13.58247 -13.07191 -12.84782 -12.22468 -12.03568 -11.92337 -11.88624 -11.77092 -11.52388 -11.10490 -11.04372 -10.92974 -10.85766 -10.85210 -10.64966 -10.31238 -10.13386 -9.93380 -9.65191 -9.64371 -9.39414 -8.67525 -8.45770 -6.79062 -5.69280 -3.01577 3.03289 3.42898 3.47010 3.48227 3.58012 3.69547 4.25119 4.52794 4.53630 4.63150 4.91902 4.95898 4.98529 5.21987 5.28195 5.38599 5.42320 5.45811 5.49338 5.50827 5.53038 5.61050 5.67856 5.76575 5.81626 5.84862 5.87988 6.12551 6.23792 6.25974 6.41852 6.52475 6.58821 6.73928 6.89807 7.12702 7.56049 7.58519 7.81895 7.99049 8.27681 8.65043 9.24945 9.84858 10.51018 11.42684 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.003763 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.475040 B = 7439.953387 C = 8502.036150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.225 4.225 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.176 3.824 11 C -0.153 4.153 12 C 0.128 3.872 13 H 0.087 0.913 14 N -0.705 5.705 15 C 0.512 3.488 16 O -0.556 6.556 17 C -0.137 4.137 18 C -0.110 4.110 19 C 0.078 3.922 20 H 0.080 0.920 21 C -0.152 4.152 22 C -0.157 4.157 23 C 0.049 3.951 24 O -0.376 6.376 25 C 0.125 3.875 26 H 0.252 0.748 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.403 0.597 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.026 0.974 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 -14.309 -14.339 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.052 3.948 11 C -0.192 4.192 12 C 0.022 3.978 13 H 0.105 0.895 14 N -0.355 5.355 15 C 0.299 3.701 16 O -0.435 6.435 17 C -0.177 4.177 18 C -0.148 4.148 19 C 0.021 3.979 20 H 0.098 0.902 21 C -0.189 4.189 22 C -0.195 4.195 23 C -0.027 4.027 24 O -0.295 6.295 25 C -0.002 4.002 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.237 0.763 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.044 0.956 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.748 -14.445 -13.862 20.209 hybrid contribution 0.268 1.131 -0.194 1.178 sum 3.016 -13.315 -14.056 19.595 Atomic orbital electron populations 1.69942 1.04818 1.25044 1.57442 1.24767 0.95721 0.97561 1.02427 0.86200 0.78447 0.83235 0.77902 1.21222 1.21627 1.21233 1.19020 0.90412 0.82449 1.43425 0.90637 1.44487 1.01457 0.99879 1.87228 1.21154 0.84569 0.87906 1.01200 1.23215 0.95728 1.00084 1.00203 1.22105 0.97266 0.99126 0.79293 0.89543 1.45878 1.45263 1.37203 1.07169 1.20648 0.79265 0.80430 0.89790 1.90648 1.41705 1.38138 1.73000 1.21601 1.01528 1.02614 0.91997 1.21703 1.00781 0.99179 0.93162 1.22834 0.97318 0.83360 0.94395 0.90195 1.23182 0.99502 0.98448 0.97784 1.23267 1.01581 0.96082 0.98571 1.23370 0.88688 0.96131 0.94554 1.88469 1.40815 1.28649 1.71597 1.21952 0.94877 0.86361 0.96980 0.93792 0.93630 0.93834 0.91664 0.91059 0.76319 0.89375 0.88220 0.90707 0.90376 0.90137 0.90052 0.90484 0.90054 0.89858 0.92200 0.95610 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.00 10.31 55.49 0.57 -26.43 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.22 -6.36 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.51 3.40 -169.98 -0.58 -16.09 16 10 C 0.18 4.18 5.36 -3.06 -0.02 4.16 16 11 C -0.15 -2.78 6.53 -24.90 -0.16 -2.94 16 12 C 0.13 2.36 3.37 -65.78 -0.22 2.14 16 13 H 0.09 1.55 7.63 -51.93 -0.40 1.16 16 14 N -0.71 -11.96 5.20 -51.73 -0.27 -12.22 16 15 C 0.51 8.48 7.83 -10.99 -0.09 8.39 16 16 O -0.56 -10.88 15.67 5.55 0.09 -10.79 16 17 C -0.14 -1.76 5.61 -27.88 -0.16 -1.92 16 18 C -0.11 -1.30 4.07 -26.73 -0.11 -1.41 16 19 C 0.08 0.79 3.52 -26.00 -0.09 0.69 16 20 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 21 C -0.15 -1.18 6.54 -24.78 -0.16 -1.35 16 22 C -0.16 -1.11 7.16 -24.48 -0.18 -1.29 16 23 C 0.05 0.45 7.78 38.18 0.30 0.74 16 24 O -0.38 -4.53 10.63 -35.23 -0.37 -4.90 16 25 C 0.13 2.77 6.94 -2.47 -0.02 2.75 16 26 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 28 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.40 6.45 8.64 -40.82 -0.35 6.10 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.35 7.88 -51.93 -0.41 0.94 16 34 H 0.07 1.02 8.10 -51.93 -0.42 0.59 16 35 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.08 0.64 7.85 -51.93 -0.41 0.23 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 345.36 15.07 5.20 5.20 Total: -1.00 -32.65 345.36 -8.91 -41.56 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.38 Total: 3.19 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.15 Total: 3.12 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.27 Total: -54.74 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.29 Total: -15.69 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.65 -8.91 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494743270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.406 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds