Wall clock time and date at job start Tue Mar 31 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00156 * 2 1 4 4 H 1.48501 * 109.47023 * 240.00542 * 3 2 1 5 5 H 1.48504 * 109.47075 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47352 * 119.99921 * 3 2 1 7 7 C 1.38813 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00080 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.47027 * 125.65027 * 359.97374 * 9 7 2 11 11 C 1.54320 * 107.27212 * 178.97703 * 10 9 7 12 12 C 1.55159 * 102.94295 * 337.81007 * 11 10 9 13 13 H 1.09000 * 110.99914 * 153.61116 * 12 11 10 14 14 N 1.46499 * 111.00291 * 277.42570 * 12 11 10 15 15 C 1.34777 * 119.99665 * 202.09919 * 14 12 11 16 16 O 1.21283 * 119.99990 * 359.71991 * 15 14 12 17 17 C 1.50698 * 119.99538 * 179.72653 * 15 14 12 18 18 C 1.52999 * 109.47004 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47303 * 179.97438 * 18 17 15 20 20 H 1.08995 * 109.82803 * 305.56743 * 19 18 17 21 21 C 1.54390 * 109.83082 * 184.58737 * 19 18 17 22 22 C 1.55305 * 102.25038 * 219.13172 * 21 19 18 23 23 C 1.54946 * 100.94229 * 34.13594 * 22 21 19 24 24 O 1.43243 * 109.82683 * 66.45778 * 19 18 17 25 25 C 1.47530 * 125.63576 * 180.02562 * 9 7 2 26 26 H 0.97009 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.88115 * 59.56235 * 10 9 7 28 28 H 1.09002 * 110.00915 * 298.46868 * 10 9 7 29 29 H 1.09000 * 110.72210 * 219.44440 * 11 10 9 30 30 H 1.09005 * 110.87008 * 96.24322 * 11 10 9 31 31 H 0.97001 * 119.99790 * 21.81632 * 14 12 11 32 32 H 1.09003 * 109.47112 * 299.99065 * 17 15 14 33 33 H 1.08993 * 109.47916 * 59.99687 * 17 15 14 34 34 H 1.09000 * 109.47527 * 299.99994 * 18 17 15 35 35 H 1.09007 * 109.47302 * 59.99534 * 18 17 15 36 36 H 1.09000 * 110.84927 * 337.32301 * 21 19 18 37 37 H 1.09002 * 110.84505 * 100.94652 * 21 19 18 38 38 H 1.08998 * 111.13023 * 276.21335 * 22 21 19 39 39 H 1.09005 * 111.16241 * 152.06869 * 22 21 19 40 40 H 1.09010 * 110.30874 * 204.63780 * 23 22 21 41 41 H 1.09000 * 110.31101 * 82.47272 * 23 22 21 42 42 H 1.08997 * 110.37586 * 85.26716 * 25 9 7 43 43 H 1.09001 * 110.40722 * 322.91085 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4486 -4.0441 -0.0262 12 6 0.8514 -4.6560 -0.6119 13 1 0.9830 -5.6855 -0.2788 14 7 0.8570 -4.5755 -2.0746 15 6 1.6336 -5.4110 -2.7925 16 8 2.3316 -6.2261 -2.2273 17 6 1.6347 -5.3322 -4.2974 18 6 2.5946 -6.3812 -4.8623 19 6 2.5953 -6.3017 -6.3902 20 1 1.5760 -6.3920 -6.7656 21 6 3.4720 -7.4310 -6.9730 22 6 4.1824 -6.7193 -8.1566 23 6 4.3483 -5.2895 -7.5830 24 8 3.1597 -5.0544 -6.8116 25 6 1.9341 -3.7319 -0.0005 26 1 -0.4850 0.8401 0.0004 27 1 -0.5583 -2.0521 -0.8827 28 1 -0.5561 -2.0840 0.9015 29 1 -1.2991 -4.2514 -0.6756 30 1 -0.6328 -4.4205 0.9801 31 1 0.2987 -3.9236 -2.5266 32 1 0.6285 -5.5210 -4.6719 33 1 1.9580 -4.3391 -4.6092 34 1 3.6007 -6.1922 -4.4878 35 1 2.2717 -7.3746 -4.5506 36 1 4.1975 -7.7780 -6.2372 37 1 2.8553 -8.2558 -7.3301 38 1 3.5536 -6.7149 -9.0469 39 1 5.1510 -7.1739 -8.3650 40 1 4.4236 -4.5635 -8.3927 41 1 5.2302 -5.2380 -6.9445 42 1 2.1674 -4.0429 1.0177 43 1 2.8332 -3.7420 -0.6166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494743270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:02 Heat of formation + Delta-G solvation = -92.902865 kcal Electronic energy + Delta-G solvation = -22472.014540 eV Core-core repulsion = 19130.318760 eV Total energy + Delta-G solvation = -3341.695780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02879 -40.28928 -38.85496 -35.39358 -34.48839 -33.55987 -32.96394 -31.06724 -29.78358 -28.71345 -26.51556 -25.23400 -22.72154 -22.17548 -21.88968 -21.38891 -21.06802 -18.95056 -18.04038 -17.91383 -17.29421 -16.72376 -16.65207 -16.40463 -15.73154 -15.41633 -15.29037 -14.75369 -14.56615 -14.32714 -14.04837 -13.83515 -13.59671 -13.46474 -12.94645 -12.89668 -12.79496 -12.61504 -12.28199 -12.22803 -12.12064 -12.05336 -11.85225 -11.81258 -11.79936 -11.65013 -11.59470 -10.78528 -10.71880 -10.43435 -10.02292 -8.87145 -7.85851 -5.20145 1.45030 1.47593 1.54021 1.70110 2.31099 2.48828 2.95967 3.32733 3.61670 3.66852 3.69655 3.81886 3.93008 4.02175 4.07887 4.18495 4.24844 4.31747 4.39362 4.46329 4.63232 4.67990 4.74851 4.80864 4.83673 4.89005 4.90003 4.95991 4.98556 5.02086 5.04332 5.13990 5.23769 5.37244 5.42630 5.61067 5.68444 5.76588 6.16013 6.19329 6.64417 7.11139 7.31160 7.76379 8.40801 9.23873 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.003763 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.475040 B = 7439.953387 C = 8502.036150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.058 4.058 3 Si 0.976 3.024 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.621 5.621 10 C 0.184 3.816 11 C -0.133 4.133 12 C 0.140 3.860 13 H 0.101 0.899 14 N -0.705 5.705 15 C 0.510 3.490 16 O -0.587 6.587 17 C -0.129 4.129 18 C -0.105 4.105 19 C 0.077 3.923 20 H 0.095 0.905 21 C -0.150 4.150 22 C -0.149 4.149 23 C 0.038 3.962 24 O -0.404 6.404 25 C 0.122 3.878 26 H 0.248 0.752 27 H 0.020 0.980 28 H 0.009 0.991 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.408 0.592 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.030 0.970 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.103 -15.494 -15.732 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.252 4.252 3 Si 0.804 3.196 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.348 5.348 10 C 0.059 3.941 11 C -0.171 4.171 12 C 0.034 3.966 13 H 0.118 0.882 14 N -0.355 5.355 15 C 0.299 3.701 16 O -0.468 6.468 17 C -0.169 4.169 18 C -0.144 4.144 19 C 0.019 3.981 20 H 0.113 0.887 21 C -0.187 4.187 22 C -0.186 4.186 23 C -0.038 4.038 24 O -0.325 6.325 25 C -0.004 4.004 26 H 0.057 0.943 27 H 0.039 0.961 28 H 0.027 0.973 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.243 0.757 32 H 0.137 0.863 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.458 -15.650 -15.270 22.003 hybrid contribution 0.411 1.502 0.267 1.580 sum 2.869 -14.148 -15.003 20.820 Atomic orbital electron populations 1.70141 1.05945 1.25362 1.57988 1.25539 0.96648 1.00572 1.02433 0.85204 0.77249 0.79144 0.78026 1.20597 1.21577 1.20652 1.19320 0.90677 0.83980 1.43511 0.91070 1.44723 1.02520 1.00464 1.87067 1.20953 0.83294 0.91520 0.98301 1.23068 0.96461 0.95467 1.02115 1.21929 0.95757 0.98737 0.80187 0.88154 1.45910 1.45519 1.37457 1.06605 1.21299 0.78148 0.79471 0.91229 1.90632 1.42809 1.39435 1.73927 1.21620 1.03607 1.02581 0.89073 1.21672 0.98991 0.98976 0.94713 1.22923 0.98554 0.83663 0.92915 0.88713 1.23196 0.99395 0.98289 0.97856 1.23254 1.02560 0.94360 0.98445 1.23556 0.87641 0.98027 0.94603 1.88435 1.41812 1.30063 1.72154 1.22073 0.95384 0.85803 0.97178 0.94269 0.96137 0.97293 0.88642 0.89200 0.75706 0.86273 0.88967 0.93233 0.89874 0.90669 0.88055 0.89403 0.88521 0.88947 0.92866 0.95262 0.95802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.19 10.31 21.65 0.22 -55.97 16 2 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 3 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.25 -14.18 10.28 84.03 0.86 -13.31 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.62 -32.37 3.40 -691.70 -2.35 -34.72 16 10 C 0.18 8.79 5.36 86.73 0.47 9.25 16 11 C -0.13 -4.55 6.53 31.78 0.21 -4.35 16 12 C 0.14 4.99 3.37 46.39 0.16 5.14 16 13 H 0.10 3.39 7.63 -2.39 -0.02 3.37 16 14 N -0.71 -23.06 5.20 -435.95 -2.27 -25.33 16 15 C 0.51 16.40 7.83 87.66 0.69 17.09 16 16 O -0.59 -22.65 15.67 -3.04 -0.05 -22.69 16 17 C -0.13 -3.14 5.61 29.85 0.17 -2.98 16 18 C -0.11 -2.39 4.07 30.59 0.12 -2.27 16 19 C 0.08 1.41 3.52 31.07 0.11 1.52 16 20 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 21 C -0.15 -2.02 6.54 31.86 0.21 -1.82 16 22 C -0.15 -1.77 7.16 32.05 0.23 -1.54 16 23 C 0.04 0.65 7.78 72.65 0.56 1.22 16 24 O -0.40 -9.39 10.63 -148.98 -1.58 -10.98 16 25 C 0.12 5.40 6.94 86.84 0.60 6.00 16 26 H 0.25 14.36 8.31 -92.70 -0.77 13.58 16 27 H 0.02 1.07 7.38 -2.39 -0.02 1.05 16 28 H 0.01 0.48 7.50 -2.39 -0.02 0.46 16 29 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 31 H 0.41 12.56 8.64 -92.71 -0.80 11.76 16 32 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 2.44 7.88 -2.39 -0.02 2.42 16 34 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 35 H 0.08 1.79 8.10 -2.38 -0.02 1.77 16 36 H 0.07 1.09 7.85 -2.39 -0.02 1.08 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -71.48 345.36 1.03 -70.44 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.18 Total: 19.73 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 4.85 Total: 11.08 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.40 Total: -116.02 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.63 Total: -33.67 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -71.48 1.03 -70.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494743270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.459 kcal (2) G-P(sol) polarization free energy of solvation -71.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds