Wall clock time and date at job start Tue Mar 31 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00199 * 2 1 4 4 H 1.48497 * 109.47023 * 274.98371 * 3 2 1 5 5 H 1.48498 * 109.46846 * 34.98636 * 3 2 1 6 6 H 1.48496 * 109.47119 * 154.98788 * 3 2 1 7 7 C 1.38819 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00216 * 187.05292 * 7 2 1 9 9 N 1.36929 * 119.99798 * 7.05475 * 7 2 1 10 10 C 1.47030 * 125.65223 * 354.78802 * 9 7 2 11 11 C 1.54320 * 107.27407 * 178.98814 * 10 9 7 12 12 C 1.55161 * 102.94130 * 337.80433 * 11 10 9 13 13 H 1.09001 * 111.00171 * 153.60954 * 12 11 10 14 14 N 1.46494 * 111.00711 * 277.42894 * 12 11 10 15 15 C 1.34775 * 120.00190 * 205.00031 * 14 12 11 16 16 O 1.21280 * 119.99808 * 0.02562 * 15 14 12 17 17 C 1.50692 * 120.00240 * 179.97438 * 15 14 12 18 18 C 1.52998 * 109.47696 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47495 * 180.02562 * 18 17 15 20 20 H 1.09000 * 110.35506 * 55.69206 * 19 18 17 21 21 C 1.54953 * 110.30903 * 177.83231 * 19 18 17 22 22 C 1.55302 * 100.94239 * 155.35766 * 21 19 18 23 23 C 1.54382 * 102.25615 * 325.86970 * 22 21 19 24 24 O 1.43240 * 107.58780 * 21.35105 * 23 22 21 25 25 C 1.47426 * 125.65074 * 174.83966 * 9 7 2 26 26 H 0.97004 * 119.99507 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.87785 * 59.56854 * 10 9 7 28 28 H 1.09000 * 109.88041 * 298.40765 * 10 9 7 29 29 H 1.09002 * 110.71821 * 219.44277 * 11 10 9 30 30 H 1.09004 * 110.71970 * 96.16668 * 11 10 9 31 31 H 0.97003 * 120.00054 * 24.99603 * 14 12 11 32 32 H 1.09000 * 109.47239 * 59.99664 * 17 15 14 33 33 H 1.09003 * 109.47287 * 300.00367 * 17 15 14 34 34 H 1.09004 * 109.46861 * 59.99772 * 18 17 15 35 35 H 1.09003 * 109.46869 * 300.00399 * 18 17 15 36 36 H 1.09004 * 111.12191 * 37.44228 * 21 19 18 37 37 H 1.08994 * 111.15806 * 273.29303 * 21 19 18 38 38 H 1.08994 * 110.85319 * 207.67834 * 22 21 19 39 39 H 1.09003 * 110.84677 * 84.05274 * 22 21 19 40 40 H 1.08998 * 109.83023 * 261.84417 * 23 22 21 41 41 H 1.08998 * 109.91046 * 140.90779 * 23 22 21 42 42 H 1.09002 * 110.36638 * 85.24043 * 25 9 7 43 43 H 1.09001 * 110.36620 * 322.92904 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0841 -1.2058 0.1143 9 7 1.3333 -2.3835 -0.1467 10 6 -0.1283 -2.5323 -0.2033 11 6 -0.4289 -4.0331 -0.3997 12 6 0.8909 -4.5749 -1.0095 13 1 1.0197 -5.6336 -0.7842 14 7 0.9375 -4.3389 -2.4546 15 6 1.6944 -5.1282 -3.2423 16 8 2.3367 -6.0342 -2.7548 17 6 1.7419 -4.8858 -4.7288 18 6 2.6667 -5.9136 -5.3840 19 6 2.7154 -5.6670 -6.8932 20 1 3.0197 -4.6410 -7.1001 21 6 3.6898 -6.6638 -7.5698 22 6 3.1217 -6.6964 -9.0149 23 6 1.6056 -6.5323 -8.7748 24 8 1.4338 -5.9358 -7.4839 25 6 1.9493 -3.7170 -0.2724 26 1 -0.4849 0.8401 -0.0004 27 1 -0.5268 -1.9615 -1.0421 28 1 -0.5727 -2.1841 0.7291 29 1 -1.2594 -4.1727 -1.0918 30 1 -0.6375 -4.5130 0.5566 31 1 0.4235 -3.6145 -2.8445 32 1 2.1198 -3.8817 -4.9213 33 1 0.7391 -4.9825 -5.1450 34 1 2.2883 -6.9175 -5.1915 35 1 3.6696 -5.8173 -4.9679 36 1 3.6326 -7.6472 -7.1030 37 1 4.7116 -6.2847 -7.5579 38 1 3.3373 -7.6509 -9.4951 39 1 3.5130 -5.8672 -9.6043 40 1 1.1197 -7.5077 -8.7989 41 1 1.1762 -5.8864 -9.5406 42 1 2.1560 -4.1338 0.7134 43 1 2.8657 -3.6577 -0.8597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494743271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:05 Heat of formation + Delta-G solvation = -71.596540 kcal Electronic energy + Delta-G solvation = -22373.321747 eV Core-core repulsion = 19032.549878 eV Total energy + Delta-G solvation = -3340.771869 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.86244 -39.27053 -37.21547 -33.67675 -33.53223 -32.33404 -31.74147 -29.33024 -28.69569 -27.12619 -24.73470 -24.03336 -21.94335 -21.23817 -20.26877 -20.00534 -19.65559 -17.16076 -17.10147 -16.65291 -15.89094 -15.63965 -15.36920 -14.70993 -14.63067 -14.04395 -13.82394 -13.63121 -13.37096 -13.09360 -12.99883 -12.26073 -12.02765 -11.92026 -11.88298 -11.78108 -11.63961 -11.08822 -11.05372 -10.93960 -10.90906 -10.86133 -10.66826 -10.31984 -10.11388 -9.93362 -9.68725 -9.68268 -9.41067 -8.67576 -8.45943 -6.80855 -5.72729 -3.03977 3.02651 3.39774 3.45645 3.47369 3.57549 3.62776 4.23003 4.49584 4.50711 4.62096 4.87204 4.94146 4.96269 5.20910 5.28817 5.36440 5.38616 5.45462 5.46702 5.48353 5.52693 5.57438 5.68569 5.77191 5.82256 5.82812 5.87594 6.07803 6.22107 6.25760 6.41240 6.52306 6.58075 6.71804 6.85583 7.11881 7.54315 7.58154 7.80420 7.98758 8.25471 8.64334 9.22316 9.82584 10.49255 11.39571 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020765 B = 0.003433 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.096812 B = 8153.026194 C = 8803.802236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.089 0.911 14 N -0.705 5.705 15 C 0.512 3.488 16 O -0.556 6.556 17 C -0.139 4.139 18 C -0.098 4.098 19 C 0.079 3.921 20 H 0.073 0.927 21 C -0.152 4.152 22 C -0.157 4.157 23 C 0.051 3.949 24 O -0.379 6.379 25 C 0.125 3.875 26 H 0.251 0.749 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.403 0.597 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.026 0.974 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.485 -12.631 -15.894 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.193 4.193 12 C 0.022 3.978 13 H 0.107 0.893 14 N -0.355 5.355 15 C 0.299 3.701 16 O -0.435 6.435 17 C -0.179 4.179 18 C -0.136 4.136 19 C 0.022 3.978 20 H 0.090 0.910 21 C -0.190 4.190 22 C -0.195 4.195 23 C -0.026 4.026 24 O -0.299 6.299 25 C -0.002 4.002 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.237 0.763 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.689 -12.997 -15.408 20.336 hybrid contribution 0.358 1.347 -0.284 1.423 sum 3.047 -11.650 -15.692 19.779 Atomic orbital electron populations 1.69970 1.04848 1.24953 1.57139 1.24794 0.95696 0.97565 1.02367 0.86129 0.78715 0.83688 0.77451 1.21689 1.21817 1.20693 1.19061 0.91101 0.82575 1.42610 0.90560 1.44488 1.01498 1.00962 1.86145 1.21178 0.84658 0.88199 1.00953 1.23216 0.95686 1.00323 1.00040 1.22109 0.97129 0.99152 0.79453 0.89347 1.45873 1.47976 1.33879 1.07754 1.20629 0.78803 0.81628 0.89041 1.90648 1.43975 1.32410 1.76477 1.21612 1.02853 1.01362 0.92027 1.21457 1.00663 0.99945 0.91572 1.23089 0.82926 0.98271 0.93559 0.90953 1.23307 0.99978 1.00792 0.94910 1.23120 0.95669 1.03031 0.97657 1.23086 0.95682 0.98082 0.85773 1.88437 1.28388 1.81849 1.31188 1.21942 0.94967 0.86911 0.96367 0.93823 0.93453 0.94007 0.91612 0.91073 0.76256 0.88997 0.88515 0.90532 0.89911 0.90078 0.89811 0.90144 0.90584 0.91512 0.91598 0.95634 0.93984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.36 55.49 0.57 -26.11 16 2 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.08 29.56 -169.99 -5.02 17.06 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.29 10.27 -15.06 -0.15 -6.44 16 8 H 0.08 2.10 7.84 -52.49 -0.41 1.68 16 9 N -0.60 -15.32 3.39 -170.07 -0.58 -15.89 16 10 C 0.17 4.11 5.37 -3.06 -0.02 4.10 16 11 C -0.15 -2.79 6.55 -24.90 -0.16 -2.95 16 12 C 0.13 2.34 3.43 -65.78 -0.23 2.12 16 13 H 0.09 1.60 7.54 -51.93 -0.39 1.20 16 14 N -0.71 -11.91 5.19 -51.74 -0.27 -12.18 16 15 C 0.51 8.41 7.83 -10.99 -0.09 8.33 16 16 O -0.56 -10.78 15.62 5.56 0.09 -10.69 16 17 C -0.14 -1.76 5.61 -27.89 -0.16 -1.92 16 18 C -0.10 -1.15 4.25 -26.74 -0.11 -1.27 16 19 C 0.08 0.79 3.43 -25.70 -0.09 0.70 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.15 -1.20 6.57 -24.48 -0.16 -1.37 16 22 C -0.16 -1.06 7.02 -24.79 -0.17 -1.24 16 23 C 0.05 0.42 7.79 37.88 0.30 0.72 16 24 O -0.38 -4.32 10.69 -35.23 -0.38 -4.69 16 25 C 0.13 2.72 6.93 -2.53 -0.02 2.70 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.05 1.21 7.30 -51.93 -0.38 0.83 16 28 H 0.04 1.10 7.61 -51.93 -0.40 0.70 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.40 6.49 8.67 -40.82 -0.35 6.14 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.10 1.16 7.91 -51.93 -0.41 0.75 16 34 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -32.10 345.64 -8.92 -41.02 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.39 Total: 3.13 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.16 Total: 3.16 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.27 Total: -54.18 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.29 Total: -15.39 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.10 -8.92 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494743271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.581 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds