Wall clock time and date at job start Tue Mar 31 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99786 * 2 1 4 4 H 1.48498 * 109.46934 * 269.99653 * 3 2 1 5 5 H 1.48499 * 109.47112 * 29.99134 * 3 2 1 6 6 H 1.48491 * 109.47138 * 149.99528 * 3 2 1 7 7 C 1.38811 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99601 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99660 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46818 * 180.02562 * 10 9 7 12 12 C 1.31006 * 119.99643 * 127.00358 * 11 10 9 13 13 C 1.50701 * 119.99943 * 7.56344 * 12 11 10 14 14 N 1.46501 * 109.47111 * 127.15398 * 13 12 11 15 15 C 1.34779 * 119.99907 * 179.97438 * 14 13 12 16 16 O 1.21275 * 120.00016 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99739 * 179.97438 * 15 14 13 18 18 O 1.42904 * 109.46845 * 180.02562 * 17 15 14 19 19 C 1.42896 * 113.99902 * 179.97438 * 18 17 15 20 20 C 1.54889 * 110.48562 * 93.24007 * 19 18 17 21 21 C 1.55239 * 102.58749 * 156.67560 * 20 19 18 22 22 C 1.54258 * 104.23494 * 322.08711 * 21 20 19 23 23 C 1.53882 * 106.59848 * 23.60833 * 22 21 20 24 24 H 0.96999 * 120.00335 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00200 * 0.02562 * 9 7 2 26 26 H 1.08996 * 109.47378 * 60.00202 * 10 9 7 27 27 H 1.09005 * 109.47263 * 300.00059 * 10 9 7 28 28 H 1.07994 * 120.00270 * 307.00482 * 11 10 9 29 29 H 1.08002 * 119.99537 * 187.55624 * 12 11 10 30 30 H 1.08999 * 109.47347 * 7.15452 * 13 12 11 31 31 H 1.09006 * 109.46790 * 247.15145 * 13 12 11 32 32 H 0.96996 * 119.99784 * 359.97438 * 14 13 12 33 33 H 1.08999 * 109.46992 * 60.00626 * 17 15 14 34 34 H 1.09006 * 109.47234 * 300.00265 * 17 15 14 35 35 H 1.08998 * 110.43531 * 330.70040 * 19 18 17 36 36 H 1.08999 * 110.76087 * 275.06961 * 20 19 18 37 37 H 1.09004 * 110.75600 * 38.44137 * 20 19 18 38 38 H 1.09001 * 110.46808 * 203.39725 * 21 20 19 39 39 H 1.09003 * 110.57999 * 80.83542 * 21 20 19 40 40 H 1.09008 * 110.03575 * 264.33075 * 22 21 20 41 41 H 1.08997 * 110.07860 * 142.91396 * 22 21 20 42 42 H 1.09000 * 110.03299 * 240.71939 * 23 22 21 43 43 H 1.08997 * 110.07116 * 119.30523 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6998 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0789 -4.8022 0.0008 12 6 1.1733 -5.7440 -0.9050 13 6 2.3564 -5.7762 -1.8379 14 7 2.9781 -7.1020 -1.7926 15 6 4.0605 -7.3650 -2.5513 16 8 4.5202 -6.5040 -3.2711 17 6 4.7003 -8.7287 -2.5042 18 8 5.8221 -8.7592 -3.3890 19 6 6.5043 -10.0145 -3.4194 20 6 5.9544 -10.9026 -4.5631 21 6 7.1353 -11.8727 -4.8357 22 6 8.3929 -10.9938 -4.6756 23 6 7.9917 -9.8122 -3.7751 24 1 -0.4850 0.8400 -0.0004 25 1 0.3556 -2.3881 -0.0002 26 1 2.6841 -3.7141 0.8921 27 1 2.6856 -3.7149 -0.8878 28 1 0.2992 -4.8467 0.7468 29 1 0.4034 -6.4973 -0.9830 30 1 3.0825 -5.0238 -1.5300 31 1 2.0235 -5.5655 -2.8542 32 1 2.6106 -7.7905 -1.2166 33 1 3.9743 -9.4814 -2.8114 34 1 5.0337 -8.9388 -1.4879 35 1 6.4072 -10.5238 -2.4606 36 1 5.0697 -11.4492 -4.2365 37 1 5.7351 -10.3030 -5.4465 38 1 7.0750 -12.2715 -5.8484 39 1 7.1412 -12.6835 -4.1072 40 1 8.7188 -10.6273 -5.6491 41 1 9.1924 -11.5666 -4.2058 42 1 8.1228 -8.8725 -4.3116 43 1 8.5957 -9.8114 -2.8678 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497535824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:34 Heat of formation + Delta-G solvation = -58.637643 kcal Electronic energy + Delta-G solvation = -21050.978057 eV Core-core repulsion = 17710.768128 eV Total energy + Delta-G solvation = -3340.209929 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.92872 -38.90375 -36.67171 -36.02380 -34.48963 -32.86127 -30.54548 -29.34867 -29.02010 -27.51487 -25.91154 -24.59068 -22.47806 -21.13727 -20.85023 -20.52715 -18.83534 -17.48279 -17.32259 -16.65629 -16.32426 -16.03347 -15.77511 -15.20634 -14.83798 -14.46173 -13.94546 -13.84816 -13.60127 -13.44936 -13.20272 -12.84334 -12.62353 -12.48099 -12.33011 -11.84348 -11.72671 -11.58704 -11.49255 -11.00793 -10.94564 -10.81734 -10.79428 -10.42686 -10.02906 -9.90598 -9.84863 -9.75977 -9.17666 -9.01986 -8.60300 -6.91235 -5.75890 -3.05098 2.19006 2.58547 2.88140 3.46315 3.51299 3.52931 3.80311 4.17668 4.22082 4.53251 4.61477 4.63109 4.79067 4.86092 4.89373 5.03771 5.07663 5.10468 5.20623 5.26724 5.28987 5.46107 5.53235 5.57218 5.65653 5.69026 5.75463 5.83290 5.88998 5.93582 5.96614 6.24367 6.31524 6.54009 6.57955 6.84478 6.87702 7.13855 7.47165 7.71661 8.20443 8.42556 9.53973 10.09628 10.45030 11.46865 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030029 B = 0.002281 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.207982 B =12273.984272 C =12966.676369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.728 5.728 10 C 0.161 3.839 11 C -0.108 4.108 12 C -0.200 4.200 13 C 0.142 3.858 14 N -0.723 5.723 15 C 0.508 3.492 16 O -0.517 6.517 17 C 0.045 3.955 18 O -0.353 6.353 19 C 0.081 3.919 20 C -0.148 4.148 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.124 4.124 24 H 0.255 0.745 25 H 0.385 0.615 26 H 0.028 0.972 27 H 0.036 0.964 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.399 0.601 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.617 -28.070 -5.244 30.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.372 5.372 10 C 0.034 3.966 11 C -0.127 4.127 12 C -0.219 4.219 13 C 0.020 3.980 14 N -0.377 5.377 15 C 0.293 3.707 16 O -0.391 6.391 17 C -0.035 4.035 18 O -0.271 6.271 19 C 0.023 3.977 20 C -0.186 4.186 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.161 4.161 24 H 0.065 0.935 25 H 0.218 0.782 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.232 0.768 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.176 -27.127 -5.893 29.925 hybrid contribution -0.361 0.323 0.507 0.701 sum 10.815 -26.804 -5.386 29.401 Atomic orbital electron populations 1.69665 1.05132 1.25715 1.57661 1.24764 0.95578 0.97777 1.02887 0.86150 0.78625 0.83598 0.77604 1.21607 1.21748 1.20695 1.19252 0.91115 0.83974 1.42827 0.91039 1.42268 1.05895 0.99502 1.89529 1.20022 0.93003 0.84771 0.98799 1.23306 0.99044 0.94723 0.95671 1.22582 0.98808 1.02188 0.98349 1.20570 0.94032 0.83717 0.99667 1.45920 1.30538 1.15604 1.45631 1.20225 0.80609 0.89413 0.80483 1.90764 1.61892 1.47479 1.38972 1.22235 0.90322 0.95670 0.95262 1.88081 1.42403 1.33080 1.63491 1.23110 0.92499 0.84229 0.97905 1.23078 0.98003 0.97739 0.99808 1.22328 0.94383 0.97564 1.01844 1.22087 0.97753 0.96169 1.00034 1.22182 0.93712 0.99878 1.00346 0.93484 0.78163 0.95398 0.94622 0.86858 0.87024 0.89233 0.91000 0.76779 0.90460 0.90314 0.91386 0.91438 0.90178 0.91324 0.91514 0.91408 0.91568 0.90108 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.73 -18.93 5.59 -61.08 -0.34 -19.27 16 10 C 0.16 3.30 6.35 -5.19 -0.03 3.27 16 11 C -0.11 -1.74 9.63 -36.03 -0.35 -2.09 16 12 C -0.20 -2.68 9.63 -36.03 -0.35 -3.02 16 13 C 0.14 2.04 5.76 -5.19 -0.03 2.01 16 14 N -0.72 -8.19 5.55 -61.47 -0.34 -8.54 16 15 C 0.51 6.78 7.91 -10.98 -0.09 6.70 16 16 O -0.52 -9.69 16.50 -14.35 -0.24 -9.93 16 17 C 0.05 0.42 6.27 36.01 0.23 0.65 16 18 O -0.35 -4.15 9.59 -55.14 -0.53 -4.68 16 19 C 0.08 0.66 3.33 -25.07 -0.08 0.58 16 20 C -0.15 -1.06 6.65 -24.55 -0.16 -1.22 16 21 C -0.12 -0.71 6.84 -24.89 -0.17 -0.88 16 22 C -0.12 -0.75 6.80 -25.61 -0.17 -0.93 16 23 C -0.12 -0.97 6.56 -25.61 -0.17 -1.13 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.38 10.43 7.66 -40.82 -0.31 10.12 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.75 5.29 -51.93 -0.27 0.48 16 28 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 29 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.09 1.51 5.30 -51.93 -0.28 1.23 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.40 3.05 8.46 -40.82 -0.35 2.70 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.07 0.44 7.84 -51.93 -0.41 0.03 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 356.75 15.07 5.38 5.38 Total: -1.00 -35.08 356.75 -9.07 -44.15 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.07 Total: 6.62 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.62 Total: -3.66 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.04 Total: -55.75 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.77 Total: -14.61 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.08 -9.07 -44.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497535824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.489 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds