Wall clock time and date at job start Tue Mar 31 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00297 * 2 1 4 4 H 1.48502 * 109.47032 * 270.00430 * 3 2 1 5 5 H 1.48499 * 109.46831 * 30.00212 * 3 2 1 6 6 H 1.48493 * 109.47130 * 150.00130 * 3 2 1 7 7 C 1.38819 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99990 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99673 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00022 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47340 * 180.02562 * 10 9 7 12 12 C 1.31004 * 120.00321 * 124.99877 * 11 10 9 13 13 C 1.50699 * 120.00004 * 180.02562 * 12 11 10 14 14 N 1.46492 * 109.47097 * 124.99811 * 13 12 11 15 15 C 1.34780 * 119.99885 * 179.97438 * 14 13 12 16 16 O 1.21274 * 120.00170 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99931 * 180.02562 * 15 14 13 18 18 O 1.42897 * 109.47084 * 180.02562 * 17 15 14 19 19 C 1.42898 * 114.00017 * 179.97438 * 18 17 15 20 20 C 1.54894 * 110.48190 * 93.24436 * 19 18 17 21 21 C 1.55238 * 102.58338 * 156.67678 * 20 19 18 22 22 C 1.54266 * 104.23333 * 322.08174 * 21 20 19 23 23 C 1.53869 * 106.59800 * 23.61579 * 22 21 20 24 24 H 0.97001 * 119.99709 * 359.97438 * 1 2 3 25 25 H 0.97006 * 120.00340 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47207 * 59.99749 * 10 9 7 27 27 H 1.09002 * 109.46863 * 300.00109 * 10 9 7 28 28 H 1.08004 * 119.99849 * 304.99400 * 11 10 9 29 29 H 1.07999 * 119.99647 * 0.02562 * 12 11 10 30 30 H 1.08999 * 109.47211 * 4.99776 * 13 12 11 31 31 H 1.09004 * 109.46580 * 244.99723 * 13 12 11 32 32 H 0.97003 * 120.00131 * 0.02562 * 14 13 12 33 33 H 1.08999 * 109.47134 * 60.00350 * 17 15 14 34 34 H 1.08999 * 109.46878 * 300.00538 * 17 15 14 35 35 H 1.09002 * 110.43427 * 330.70321 * 19 18 17 36 36 H 1.08996 * 110.75388 * 275.06031 * 20 19 18 37 37 H 1.08993 * 110.76071 * 38.44257 * 20 19 18 38 38 H 1.09005 * 110.46917 * 203.39204 * 21 20 19 39 39 H 1.09007 * 110.58541 * 80.83124 * 21 20 19 40 40 H 1.08999 * 110.03060 * 264.32313 * 22 21 20 41 41 H 1.09006 * 110.06829 * 142.91691 * 22 21 20 42 42 H 1.09001 * 110.02983 * 240.71432 * 23 22 21 43 43 H 1.08996 * 110.07773 * 119.30576 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 1.1480 -5.7228 -0.9307 13 6 0.1683 -6.8679 -0.9316 14 7 -0.5072 -6.9315 -2.2299 15 6 -1.4322 -7.8839 -2.4623 16 8 -1.7055 -8.6879 -1.5965 17 6 -2.1267 -7.9497 -3.7981 18 8 -3.0558 -9.0355 -3.7989 19 6 -3.7722 -9.1865 -5.0261 20 6 -3.0493 -10.1932 -5.9553 21 6 -4.1954 -10.6815 -6.8816 22 6 -5.4213 -10.7772 -5.9501 23 6 -5.1522 -9.8267 -4.7704 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3881 -0.0005 26 1 2.6847 -3.7146 0.8894 27 1 2.6847 -3.7145 -0.8905 28 1 0.3198 -4.8643 0.7648 29 1 1.9072 -5.6610 -1.6963 30 1 -0.5703 -6.7147 -0.1448 31 1 0.7011 -7.8019 -0.7530 32 1 -0.2884 -6.2886 -2.9226 33 1 -1.3878 -8.1028 -4.5847 34 1 -2.6596 -7.0158 -3.9769 35 1 -3.8848 -8.2225 -5.5222 36 1 -2.2692 -9.6957 -6.5313 37 1 -2.6374 -11.0225 -5.3804 38 1 -3.9569 -11.6594 -7.3000 39 1 -4.3773 -9.9606 -7.6788 40 1 -5.5362 -11.7988 -5.5879 41 1 -6.3205 -10.4666 -6.4822 42 1 -5.1365 -10.3870 -3.8356 43 1 -5.9202 -9.0543 -4.7295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497535832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:37 Heat of formation + Delta-G solvation = -68.031870 kcal Electronic energy + Delta-G solvation = -20803.710353 eV Core-core repulsion = 17463.093060 eV Total energy + Delta-G solvation = -3340.617293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.94715 -38.90099 -36.46120 -35.97448 -34.69785 -32.87768 -30.76075 -29.34913 -29.01872 -27.65335 -26.28399 -23.98660 -21.95001 -21.12470 -20.88774 -20.58775 -19.47407 -17.50540 -17.36469 -17.09870 -16.20652 -15.91567 -15.78689 -14.89796 -14.88855 -14.50325 -14.05530 -13.80479 -13.59835 -13.51022 -13.26527 -12.94243 -12.60927 -12.46299 -12.06033 -11.87764 -11.79510 -11.57757 -11.48168 -11.05704 -10.99619 -10.85130 -10.81082 -10.64829 -10.10937 -9.95676 -9.84925 -9.82469 -9.27904 -9.01599 -8.74035 -6.97825 -5.80744 -3.10404 2.18721 2.53268 2.87966 3.40995 3.46157 3.48099 3.79876 4.18768 4.23170 4.54273 4.56790 4.61617 4.80772 4.89687 4.91447 4.97234 5.08400 5.11372 5.22258 5.24061 5.27950 5.47340 5.52312 5.54203 5.59801 5.66653 5.75241 5.79017 5.83664 5.94260 5.97303 6.10714 6.29373 6.44462 6.54683 6.85063 6.87756 7.11848 7.43039 7.65620 8.14039 8.37550 9.48874 10.05074 10.40340 11.41950 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026126 B = 0.002146 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.465771 B =13045.666574 C =13667.560242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.105 4.105 12 C -0.202 4.202 13 C 0.157 3.843 14 N -0.723 5.723 15 C 0.512 3.488 16 O -0.524 6.524 17 C 0.044 3.956 18 O -0.354 6.354 19 C 0.080 3.920 20 C -0.148 4.148 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.123 4.123 24 H 0.256 0.744 25 H 0.385 0.615 26 H 0.031 0.969 27 H 0.026 0.974 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.404 0.596 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 -20.846 -13.817 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.125 4.125 12 C -0.222 4.222 13 C 0.035 3.965 14 N -0.377 5.377 15 C 0.297 3.703 16 O -0.399 6.399 17 C -0.036 4.036 18 O -0.272 6.272 19 C 0.022 3.978 20 C -0.186 4.186 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.161 4.161 24 H 0.066 0.934 25 H 0.219 0.781 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.238 0.762 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.198 -21.443 -12.998 26.087 hybrid contribution 0.345 1.522 -0.573 1.662 sum -6.853 -19.921 -13.571 25.059 Atomic orbital electron populations 1.69665 1.05149 1.25761 1.57509 1.24776 0.95572 0.97793 1.02860 0.86153 0.78647 0.83630 0.77533 1.21667 1.21708 1.20697 1.19247 0.91086 0.84010 1.43024 0.91050 1.42298 1.05948 0.99559 1.89600 1.19829 0.92619 0.84574 0.98469 1.23350 0.98226 0.93927 0.96983 1.22683 1.00987 0.97028 1.01467 1.20314 0.93857 0.97680 0.84675 1.45946 1.41231 1.33136 1.17358 1.20241 0.79792 0.81137 0.89157 1.90726 1.63107 1.39835 1.46249 1.22246 0.93620 0.91949 0.95835 1.88054 1.54468 1.49536 1.35121 1.23122 0.91864 0.98113 0.84686 1.23073 0.97933 0.99894 0.97706 1.22332 0.94746 1.01473 0.97591 1.22085 0.98171 0.99805 0.95968 1.22177 0.94945 0.99209 0.99753 0.93435 0.78136 0.95098 0.95659 0.87229 0.86714 0.91128 0.91032 0.76194 0.90314 0.90064 0.91262 0.91382 0.90249 0.91336 0.91452 0.91453 0.91543 0.90200 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.48 5.59 -61.09 -0.34 -18.82 16 10 C 0.17 3.41 6.70 -5.20 -0.03 3.37 16 11 C -0.11 -1.69 9.24 -36.03 -0.33 -2.02 16 12 C -0.20 -2.69 9.24 -36.03 -0.33 -3.03 16 13 C 0.16 1.99 6.11 -5.20 -0.03 1.96 16 14 N -0.72 -8.27 5.55 -61.48 -0.34 -8.61 16 15 C 0.51 6.68 7.91 -10.98 -0.09 6.60 16 16 O -0.52 -9.21 16.50 -14.35 -0.24 -9.45 16 17 C 0.04 0.42 6.27 36.01 0.23 0.65 16 18 O -0.35 -4.17 9.59 -55.14 -0.53 -4.70 16 19 C 0.08 0.68 3.33 -25.07 -0.08 0.60 16 20 C -0.15 -1.08 6.65 -24.55 -0.16 -1.24 16 21 C -0.12 -0.73 6.84 -24.88 -0.17 -0.90 16 22 C -0.12 -0.76 6.80 -25.62 -0.17 -0.94 16 23 C -0.12 -0.97 6.56 -25.62 -0.17 -1.14 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.39 10.26 7.66 -40.82 -0.31 9.95 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 28 H 0.11 1.74 7.84 -52.48 -0.41 1.32 16 29 H 0.11 1.42 7.84 -52.49 -0.41 1.01 16 30 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.40 3.66 8.46 -40.82 -0.35 3.32 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -33.89 361.24 -9.21 -43.11 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.31 Total: 6.75 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.60 Total: -3.52 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.04 Total: -54.85 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.77 Total: -14.14 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.89 -9.21 -43.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497535832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.926 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds