Wall clock time and date at job start Tue Mar 31 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99651 * 2 1 4 4 H 1.48502 * 109.47165 * 269.99904 * 3 2 1 5 5 H 1.48507 * 109.47425 * 30.00102 * 3 2 1 6 6 H 1.48497 * 109.47112 * 150.00154 * 3 2 1 7 7 C 1.38808 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00303 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99723 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99763 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47155 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47148 * 295.00150 * 11 10 9 13 13 N 1.46501 * 109.46967 * 54.99868 * 11 10 9 14 14 C 1.34780 * 120.00017 * 204.99735 * 13 11 10 15 15 O 1.21281 * 119.99699 * 0.02562 * 14 13 11 16 16 C 1.50700 * 120.00301 * 179.97438 * 14 13 11 17 17 O 1.42899 * 109.47140 * 180.02562 * 16 14 13 18 18 C 1.42903 * 113.99629 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.46726 * 180.02562 * 18 17 16 20 20 C 1.53003 * 117.49371 * 243.61887 * 19 18 17 21 21 C 1.53001 * 117.49608 * 174.99962 * 19 18 17 22 22 C 1.53002 * 109.47195 * 174.99860 * 11 10 9 23 23 C 1.52993 * 117.50028 * 248.74575 * 22 11 10 24 24 C 1.53000 * 117.49622 * 180.08498 * 22 11 10 25 25 H 0.96998 * 120.00326 * 359.97438 * 1 2 3 26 26 H 0.96995 * 119.99751 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.46957 * 59.99765 * 10 9 7 28 28 H 1.09005 * 109.46971 * 299.99793 * 10 9 7 29 29 H 0.97000 * 120.00405 * 25.00437 * 13 11 10 30 30 H 1.09007 * 109.46405 * 60.00333 * 16 14 13 31 31 H 1.09004 * 109.47198 * 300.00818 * 16 14 13 32 32 H 1.09002 * 109.47382 * 59.99956 * 18 17 16 33 33 H 1.09001 * 109.46938 * 299.99942 * 18 17 16 34 34 H 1.08995 * 115.55630 * 29.32572 * 19 18 17 35 35 H 1.08998 * 117.50656 * 0.02562 * 20 19 18 36 36 H 1.09001 * 117.49674 * 145.02590 * 20 19 18 37 37 H 1.09003 * 117.49710 * 214.97494 * 21 19 18 38 38 H 1.08998 * 117.50185 * 359.97438 * 21 19 18 39 39 H 1.08999 * 115.54766 * 34.41620 * 22 11 10 40 40 H 1.08999 * 117.50069 * 0.02562 * 23 22 11 41 41 H 1.08996 * 117.50177 * 145.02279 * 23 22 11 42 42 H 1.09005 * 117.49547 * 214.98036 * 24 22 11 43 43 H 1.08999 * 117.50262 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6528 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0641 -4.8197 -0.0001 12 1 0.4975 -4.8138 0.9310 13 7 0.1450 -4.6758 -1.1319 14 6 -1.0795 -5.2367 -1.0812 15 8 -1.4206 -5.8602 -0.0984 16 6 -2.0252 -5.0883 -2.2451 17 8 -3.2495 -5.7650 -1.9534 18 6 -4.2207 -5.6857 -2.9987 19 6 -5.4839 -6.4402 -2.5793 20 6 -5.8802 -7.6670 -3.4034 21 6 -6.6904 -6.3742 -3.5179 22 6 1.8250 -6.1411 -0.1259 23 6 1.6675 -6.9257 -1.4298 24 6 1.0022 -7.4308 -0.1471 25 1 -0.4850 0.8400 0.0004 26 1 0.3557 -2.3880 0.0005 27 1 2.6849 -3.7144 0.8905 28 1 2.6849 -3.7144 -0.8895 29 1 0.4177 -4.1769 -1.9178 30 1 -1.5736 -5.5218 -3.1375 31 1 -2.2267 -4.0309 -2.4169 32 1 -3.8148 -6.1321 -3.9064 33 1 -4.4675 -4.6408 -3.1867 34 1 -5.6808 -6.4684 -1.5077 35 1 -5.2408 -7.9368 -4.2439 36 1 -6.3379 -8.5025 -2.8738 37 1 -7.6812 -6.3593 -3.0636 38 1 -6.5844 -5.7929 -4.4338 39 1 2.7972 -6.1723 0.3660 40 1 1.0221 -6.5003 -2.1983 41 1 2.5359 -7.4735 -1.7956 42 1 1.4333 -8.3107 0.3305 43 1 -0.0812 -7.3379 -0.0719 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498733106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:01 Heat of formation + Delta-G solvation = -15.520661 kcal Electronic energy + Delta-G solvation = -22264.898023 eV Core-core repulsion = 18926.557787 eV Total energy + Delta-G solvation = -3338.340236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.00664 -38.46745 -37.18159 -36.21796 -34.89483 -33.27502 -31.26433 -29.22398 -27.82409 -26.00297 -24.02417 -22.62062 -22.22349 -21.49451 -21.10632 -20.59634 -19.62417 -17.41603 -17.19765 -16.60779 -16.39007 -15.87506 -15.56409 -15.25226 -14.66876 -14.40640 -14.20331 -13.60950 -13.53303 -13.24647 -12.93464 -12.43965 -12.40485 -12.04210 -11.77838 -11.62140 -11.35423 -11.25738 -11.16618 -10.90243 -10.84129 -10.68517 -10.44672 -10.22380 -10.08985 -9.80966 -9.63207 -9.57417 -9.43260 -8.93625 -8.63156 -6.98417 -5.80330 -3.10241 2.86093 2.94111 3.40706 3.46403 3.48166 3.55119 3.94907 4.11394 4.54035 4.60397 4.66194 4.85922 4.92437 4.97905 5.09533 5.10858 5.20581 5.22795 5.27860 5.34256 5.38606 5.48408 5.52259 5.59075 5.63786 5.77373 5.85369 5.85510 5.99878 6.02454 6.04214 6.23616 6.32553 6.48469 6.56175 6.68964 6.90458 7.05182 7.66095 7.84287 8.37500 8.53934 9.49386 10.05034 10.40525 11.41962 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014065 B = 0.004016 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.299937 B = 6969.992093 C = 8668.189855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.171 3.829 12 H 0.091 0.909 13 N -0.708 5.708 14 C 0.517 3.483 15 O -0.522 6.522 16 C 0.043 3.957 17 O -0.359 6.359 18 C 0.091 3.909 19 C -0.150 4.150 20 C -0.178 4.178 21 C -0.174 4.174 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.187 4.187 25 H 0.255 0.745 26 H 0.386 0.614 27 H 0.035 0.965 28 H 0.027 0.973 29 H 0.405 0.595 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -14.663 -8.929 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.066 3.934 12 H 0.109 0.891 13 N -0.360 5.360 14 C 0.302 3.698 15 O -0.398 6.398 16 C -0.037 4.037 17 O -0.277 6.277 18 C 0.014 3.986 19 C -0.169 4.169 20 C -0.215 4.215 21 C -0.211 4.211 22 C -0.180 4.180 23 C -0.214 4.214 24 C -0.224 4.224 25 H 0.065 0.935 26 H 0.220 0.780 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.240 0.760 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.129 -15.079 -8.026 18.149 hybrid contribution 0.432 1.393 -0.662 1.602 sum -5.698 -13.686 -8.688 17.183 Atomic orbital electron populations 1.69666 1.05102 1.25708 1.57466 1.24750 0.95513 0.97713 1.02849 0.86185 0.78670 0.83803 0.77466 1.21740 1.21775 1.20761 1.19213 0.91039 0.84041 1.43038 0.91120 1.42354 1.06004 0.99735 1.89590 1.20914 0.93029 0.85063 0.98981 1.20743 0.90046 0.92800 0.89817 0.89071 1.45853 1.14274 1.54836 1.21078 1.20089 0.82103 0.79279 0.88333 1.90640 1.75556 1.40443 1.33189 1.22221 0.86221 0.98657 0.96586 1.87993 1.23629 1.75048 1.41043 1.22055 0.87675 0.99124 0.89715 1.22114 0.94510 1.01175 0.99061 1.23066 1.03711 0.92052 1.02673 1.22976 0.95732 1.01087 1.01353 1.22703 1.00796 0.92551 1.01973 1.22866 1.02902 1.04057 0.91615 1.23349 1.01644 0.96731 1.00660 0.93480 0.78003 0.94775 0.95568 0.76022 0.90676 0.89766 0.93163 0.92538 0.86598 0.88734 0.88636 0.88399 0.88663 0.87264 0.89167 0.89542 0.89753 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.87 5.43 -59.91 -0.33 -18.20 16 10 C 0.15 2.85 5.80 -4.04 -0.02 2.82 16 11 C 0.17 2.88 2.59 -67.93 -0.18 2.70 16 12 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 13 N -0.71 -11.07 3.05 -53.80 -0.16 -11.23 16 14 C 0.52 8.51 6.74 -10.98 -0.07 8.44 16 15 O -0.52 -10.42 13.53 -14.35 -0.19 -10.61 16 16 C 0.04 0.57 6.42 36.01 0.23 0.80 16 17 O -0.36 -5.31 9.88 -55.14 -0.54 -5.85 16 18 C 0.09 1.00 6.22 37.16 0.23 1.24 16 19 C -0.15 -1.55 6.06 -90.62 -0.55 -2.10 16 20 C -0.18 -1.51 10.18 -26.73 -0.27 -1.78 16 21 C -0.17 -1.40 10.25 -26.73 -0.27 -1.67 16 22 C -0.16 -2.30 5.71 -90.62 -0.52 -2.82 16 23 C -0.18 -2.28 9.74 -26.70 -0.26 -2.54 16 24 C -0.19 -2.67 9.83 -26.69 -0.26 -2.93 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.39 10.07 7.33 -40.82 -0.30 9.77 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.40 5.87 8.60 -40.82 -0.35 5.52 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.47 7.88 -51.93 -0.41 0.06 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.11 1.44 8.11 -51.93 -0.42 1.02 16 40 H 0.09 1.15 6.67 -51.93 -0.35 0.81 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.12 1.97 5.01 -51.93 -0.26 1.71 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -32.21 355.77 -9.45 -41.67 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -7.09 Total: 13.85 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.19 Total: -5.03 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.23 Total: -56.41 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.74 Total: -16.47 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.21 -9.45 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498733106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.146 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds