Wall clock time and date at job start Tue Mar 31 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99823 * 2 1 4 4 H 1.48502 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47262 * 300.00054 * 3 2 1 6 6 H 1.48499 * 109.47312 * 60.00006 * 3 2 1 7 7 C 1.38812 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99683 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99929 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46974 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47193 * 65.00004 * 11 10 9 13 13 N 1.46501 * 109.47014 * 304.99725 * 11 10 9 14 14 C 1.34780 * 120.00017 * 154.99785 * 13 11 10 15 15 O 1.21281 * 119.99699 * 0.02562 * 14 13 11 16 16 C 1.50700 * 120.00301 * 179.97438 * 14 13 11 17 17 O 1.42899 * 109.47140 * 180.02562 * 16 14 13 18 18 C 1.42903 * 113.99629 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.46726 * 180.02562 * 18 17 16 20 20 C 1.53003 * 117.49371 * 243.61887 * 19 18 17 21 21 C 1.53001 * 117.49608 * 174.99962 * 19 18 17 22 22 C 1.53001 * 109.46955 * 185.00151 * 11 10 9 23 23 C 1.53004 * 117.49656 * 248.74430 * 22 11 10 24 24 C 1.53004 * 117.49588 * 180.08508 * 22 11 10 25 25 H 0.97002 * 120.00360 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99854 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46784 * 59.99738 * 10 9 7 28 28 H 1.08996 * 109.46824 * 299.99898 * 10 9 7 29 29 H 0.97000 * 120.00405 * 335.00487 * 13 11 10 30 30 H 1.09007 * 109.46405 * 60.00333 * 16 14 13 31 31 H 1.09004 * 109.47198 * 300.00818 * 16 14 13 32 32 H 1.09002 * 109.47382 * 59.99956 * 18 17 16 33 33 H 1.09001 * 109.46938 * 299.99942 * 18 17 16 34 34 H 1.08995 * 115.55630 * 29.32572 * 19 18 17 35 35 H 1.08998 * 117.50656 * 0.02562 * 20 19 18 36 36 H 1.09001 * 117.49674 * 145.02590 * 20 19 18 37 37 H 1.09003 * 117.49710 * 214.97494 * 21 19 18 38 38 H 1.08998 * 117.50185 * 359.97438 * 21 19 18 39 39 H 1.09000 * 115.55124 * 34.41613 * 22 11 10 40 40 H 1.09003 * 117.49597 * 0.02562 * 23 22 11 41 41 H 1.08993 * 117.49531 * 145.02150 * 23 22 11 42 42 H 1.09002 * 117.49694 * 214.97634 * 24 22 11 43 43 H 1.08996 * 117.50100 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4981 -4.8134 -0.9317 13 7 0.1441 -4.6763 1.1310 14 6 -1.0804 -5.2371 1.0791 15 8 -1.4205 -5.8608 0.0962 16 6 -2.0265 -5.0902 2.2429 17 8 -3.2503 -5.7674 1.9503 18 6 -4.2222 -5.6886 2.9950 19 6 -5.4844 -6.4448 2.5753 20 6 -6.7726 -5.6350 2.4154 21 6 -6.6047 -6.5777 3.6087 22 6 1.8248 -6.1411 0.1257 23 6 1.8348 -7.0691 -1.0908 24 6 1.0022 -7.4311 0.1417 25 1 -0.4851 0.8400 -0.0004 26 1 0.3557 -2.3881 -0.0002 27 1 2.6849 -3.7144 0.8905 28 1 2.6848 -3.7144 -0.8894 29 1 0.4162 -4.1777 1.9173 30 1 -2.2281 -4.0330 2.4158 31 1 -1.5753 -5.5247 3.1350 32 1 -4.4698 -4.6438 3.1829 33 1 -3.8167 -6.1350 3.9030 34 1 -5.3269 -7.2804 1.8934 35 1 -6.7210 -4.5635 2.6087 36 1 -7.4630 -5.9378 1.6281 37 1 -7.1846 -7.5007 3.6065 38 1 -6.4425 -6.1268 4.5877 39 1 2.7233 -6.1095 0.7419 40 1 1.2997 -6.7378 -1.9808 41 1 2.7397 -7.6481 -1.2746 42 1 1.3598 -8.2483 0.7681 43 1 -0.0809 -7.3383 0.0630 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498733107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:03 Heat of formation + Delta-G solvation = -19.937340 kcal Electronic energy + Delta-G solvation = -22132.619539 eV Core-core repulsion = 18794.087781 eV Total energy + Delta-G solvation = -3338.531758 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.82550 -38.42137 -37.19737 -36.23328 -34.99270 -33.37876 -31.20436 -29.20891 -27.73510 -25.97271 -23.96871 -22.59259 -22.12826 -21.51297 -21.05024 -20.51887 -19.96253 -17.41769 -17.14656 -16.53945 -16.28979 -16.01911 -15.27589 -14.99675 -14.94324 -14.36313 -14.28661 -13.68879 -13.57864 -13.16691 -12.90200 -12.41510 -12.40420 -12.09290 -11.74913 -11.65092 -11.23698 -11.16962 -11.03400 -10.90970 -10.84087 -10.66476 -10.42391 -10.16524 -10.08923 -9.92637 -9.70190 -9.61733 -9.39590 -8.94158 -8.60406 -6.98619 -5.80624 -3.10517 2.90408 2.93573 3.40470 3.46425 3.48626 3.55883 3.90533 4.22532 4.53797 4.63001 4.68080 4.89564 4.90601 4.99432 5.11470 5.16259 5.20284 5.30664 5.31445 5.33040 5.40335 5.47631 5.49156 5.53782 5.68084 5.79479 5.87940 5.88429 5.92345 6.01146 6.10722 6.23338 6.38643 6.49244 6.55896 6.67873 6.92041 7.06746 7.66441 7.88026 8.37135 8.57314 9.49134 10.04738 10.40277 11.41748 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.004169 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.142863 B = 6713.825148 C = 8706.465770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.171 3.829 12 H 0.088 0.912 13 N -0.706 5.706 14 C 0.519 3.481 15 O -0.526 6.526 16 C 0.044 3.956 17 O -0.359 6.359 18 C 0.091 3.909 19 C -0.151 4.151 20 C -0.177 4.177 21 C -0.175 4.175 22 C -0.163 4.163 23 C -0.171 4.171 24 C -0.185 4.185 25 H 0.255 0.745 26 H 0.386 0.614 27 H 0.025 0.975 28 H 0.036 0.964 29 H 0.404 0.596 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.081 -14.350 8.113 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.066 3.934 12 H 0.106 0.894 13 N -0.358 5.358 14 C 0.304 3.696 15 O -0.403 6.403 16 C -0.036 4.036 17 O -0.278 6.278 18 C 0.014 3.986 19 C -0.169 4.169 20 C -0.214 4.214 21 C -0.212 4.212 22 C -0.183 4.183 23 C -0.209 4.209 24 C -0.222 4.222 25 H 0.065 0.935 26 H 0.220 0.780 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.239 0.761 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.228 -14.763 7.224 17.576 hybrid contribution 0.416 1.406 0.664 1.610 sum -5.811 -13.356 7.888 16.564 Atomic orbital electron populations 1.69676 1.05110 1.25594 1.57543 1.24752 0.95512 0.97722 1.02860 0.86116 0.78778 0.84072 0.77187 1.20550 1.21848 1.21888 1.19261 0.91072 0.84022 1.42921 0.91057 1.42364 1.06013 0.99746 1.89580 1.20919 0.93003 0.85055 0.98991 1.20794 0.90002 0.92747 0.89828 0.89401 1.45826 1.14205 1.54778 1.21011 1.20063 0.82126 0.79166 0.88260 1.90628 1.75751 1.40630 1.33250 1.22217 0.86162 0.98612 0.96641 1.87990 1.23619 1.75023 1.41119 1.22054 0.87864 0.98790 0.89868 1.22104 0.88817 1.02603 1.03398 1.23079 0.99913 0.97985 1.00391 1.22973 1.01741 1.01965 0.94560 1.22656 1.01464 0.91484 1.02710 1.22896 1.02007 1.03149 0.92823 1.23276 1.00759 0.97389 1.00796 0.93528 0.78007 0.95697 0.94648 0.76136 0.89850 0.90585 0.92876 0.92865 0.86711 0.88528 0.88585 0.88482 0.88705 0.87897 0.88735 0.89233 0.89927 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -17.94 5.43 -59.91 -0.33 -18.27 16 10 C 0.15 2.87 5.80 -4.04 -0.02 2.85 16 11 C 0.17 2.90 2.43 -67.93 -0.17 2.74 16 12 H 0.09 1.72 7.34 -51.93 -0.38 1.34 16 13 N -0.71 -11.22 4.50 -53.80 -0.24 -11.46 16 14 C 0.52 8.64 7.24 -10.98 -0.08 8.56 16 15 O -0.53 -10.54 13.52 -14.35 -0.19 -10.74 16 16 C 0.04 0.59 6.42 36.01 0.23 0.82 16 17 O -0.36 -5.34 9.88 -55.14 -0.54 -5.89 16 18 C 0.09 1.01 6.22 37.16 0.23 1.24 16 19 C -0.15 -1.57 6.06 -90.62 -0.55 -2.12 16 20 C -0.18 -1.62 10.18 -26.73 -0.27 -1.90 16 21 C -0.18 -1.40 10.25 -26.73 -0.27 -1.67 16 22 C -0.16 -2.35 5.36 -90.62 -0.49 -2.84 16 23 C -0.17 -2.32 10.18 -26.69 -0.27 -2.60 16 24 C -0.19 -2.64 9.74 -26.69 -0.26 -2.90 16 25 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.39 10.11 7.33 -40.82 -0.30 9.81 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.40 5.91 8.60 -40.82 -0.35 5.56 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.55 7.88 -51.93 -0.41 0.14 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.10 0.87 8.03 -51.93 -0.42 0.45 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 40 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.12 1.98 5.02 -51.93 -0.26 1.72 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -32.31 358.69 -9.52 -41.83 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -7.15 Total: 14.09 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.16 Total: -5.00 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.16 Total: -56.74 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.74 Total: -16.62 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.31 -9.52 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498733107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.893 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds