Wall clock time and date at job start Tue Mar 31 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.08992 * 109.46993 * 295.00086 * 11 10 9 13 13 N 1.46506 * 109.46943 * 54.99919 * 11 10 9 14 14 C 1.34772 * 119.99705 * 204.99828 * 13 11 10 15 15 O 1.21279 * 120.00223 * 0.02562 * 14 13 11 16 16 C 1.50699 * 119.99825 * 180.02562 * 14 13 11 17 17 H 1.08991 * 109.48472 * 54.99888 * 16 14 13 18 18 C 1.53097 * 109.47930 * 294.97653 * 16 14 13 19 19 C 1.53177 * 109.16107 * 182.41873 * 18 16 14 20 20 C 1.53178 * 109.04673 * 56.97121 * 19 18 16 21 21 C 1.53098 * 109.15928 * 303.02001 * 20 19 18 22 22 O 1.42906 * 109.48046 * 175.02924 * 16 14 13 23 23 C 1.52995 * 109.47195 * 174.99817 * 11 10 9 24 24 C 1.52999 * 117.50225 * 248.74775 * 23 11 10 25 25 C 1.52999 * 117.49761 * 180.08552 * 23 11 10 26 26 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 28 28 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 29 29 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 30 30 H 0.97002 * 119.99781 * 25.00223 * 13 11 10 31 31 H 1.08995 * 109.52361 * 302.31889 * 18 16 14 32 32 H 1.09002 * 109.51746 * 62.50648 * 18 16 14 33 33 H 1.08997 * 109.53702 * 297.09883 * 19 18 16 34 34 H 1.09003 * 109.61262 * 176.88250 * 19 18 16 35 35 H 1.09000 * 109.51993 * 183.12129 * 20 19 18 36 36 H 1.09000 * 109.52443 * 62.92587 * 20 19 18 37 37 H 1.09002 * 109.48185 * 297.62659 * 21 20 19 38 38 H 1.09001 * 109.49024 * 177.59776 * 21 20 19 39 39 H 1.09006 * 115.55266 * 34.42181 * 23 11 10 40 40 H 1.08993 * 117.49781 * 359.97438 * 24 23 11 41 41 H 1.09000 * 117.50138 * 145.02405 * 24 23 11 42 42 H 1.09009 * 117.50018 * 214.98040 * 25 23 11 43 43 H 1.08999 * 117.50301 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.4972 -4.8179 0.9203 13 7 0.1445 -4.6708 -1.1419 14 6 -1.0799 -5.2318 -1.0935 15 8 -1.4210 -5.8596 -0.1135 16 6 -2.0252 -5.0791 -2.2572 17 1 -1.5395 -5.4282 -3.1684 18 6 -2.4069 -3.6049 -2.4148 19 6 -3.4141 -3.4661 -3.5605 20 6 -4.6283 -4.3531 -3.2689 21 6 -4.1606 -5.7984 -3.0785 22 8 -3.2032 -5.8521 -2.0189 23 6 1.8245 -6.1406 -0.1424 24 6 1.6669 -6.9194 -1.4499 25 6 1.0016 -7.4301 -0.1693 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0002 28 1 2.6849 -3.7105 -0.8952 29 1 2.6843 -3.7187 0.8848 30 1 0.4173 -4.1684 -1.9256 31 1 -2.8559 -3.2440 -1.4895 32 1 -1.5153 -3.0200 -2.6405 33 1 -2.9489 -3.7803 -4.4948 34 1 -3.7331 -2.4271 -3.6433 35 1 -5.3253 -4.3031 -4.1055 36 1 -5.1223 -4.0075 -2.3608 37 1 -3.7029 -6.1569 -4.0005 38 1 -5.0151 -6.4273 -2.8285 39 1 2.7968 -6.1742 0.3493 40 1 1.0208 -6.4911 -2.2161 41 1 2.5352 -7.4657 -1.8181 42 1 1.4326 -8.3123 0.3043 43 1 -0.0818 -7.3376 -0.0928 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498749909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:08 Heat of formation + Delta-G solvation = -50.285856 kcal Electronic energy + Delta-G solvation = -23387.088304 eV Core-core repulsion = 20047.240536 eV Total energy + Delta-G solvation = -3339.847768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32980 -38.84828 -36.83368 -34.90474 -33.77869 -33.18279 -31.69482 -30.76676 -28.17607 -25.54648 -24.04357 -23.85391 -22.21719 -21.49458 -20.92380 -20.21723 -19.60742 -17.52984 -16.96672 -16.56028 -15.88869 -15.61791 -15.22715 -14.88539 -14.58209 -14.28151 -14.21447 -13.69645 -13.28096 -13.23273 -12.92010 -12.65029 -12.56588 -12.04313 -11.64323 -11.50052 -11.35942 -11.23939 -11.14055 -11.02584 -10.90421 -10.85329 -10.47444 -10.20051 -10.06070 -9.80932 -9.57218 -9.53453 -9.28630 -8.93886 -8.61709 -6.98077 -5.80573 -3.10126 2.87772 3.06337 3.40268 3.46513 3.48422 4.02936 4.17802 4.53916 4.71130 4.78269 4.80945 4.90328 4.96646 5.04380 5.11736 5.21577 5.23377 5.35745 5.50457 5.52290 5.59991 5.65667 5.77157 5.78317 5.86224 5.89585 6.01545 6.03470 6.05031 6.12020 6.24110 6.32371 6.34051 6.49012 6.56885 6.69234 6.92382 7.11917 7.66724 7.85699 8.37230 8.55213 9.49400 10.04958 10.40749 11.41634 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.005868 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.477183 B = 4770.291486 C = 6569.472249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.170 3.830 12 H 0.091 0.909 13 N -0.706 5.706 14 C 0.523 3.477 15 O -0.523 6.523 16 C 0.077 3.923 17 H 0.077 0.923 18 C -0.146 4.146 19 C -0.119 4.119 20 C -0.159 4.159 21 C 0.061 3.939 22 O -0.355 6.355 23 C -0.161 4.161 24 C -0.177 4.177 25 C -0.187 4.187 26 H 0.254 0.746 27 H 0.386 0.614 28 H 0.026 0.974 29 H 0.035 0.965 30 H 0.404 0.596 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 -12.222 -8.899 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.065 3.935 12 H 0.109 0.891 13 N -0.358 5.358 14 C 0.308 3.692 15 O -0.398 6.398 16 C 0.015 3.985 17 H 0.095 0.905 18 C -0.184 4.184 19 C -0.157 4.157 20 C -0.196 4.196 21 C -0.016 4.016 22 O -0.273 6.273 23 C -0.180 4.180 24 C -0.214 4.214 25 C -0.224 4.224 26 H 0.064 0.936 27 H 0.220 0.780 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.239 0.761 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.309 -12.658 -8.002 15.583 hybrid contribution 0.373 1.431 -0.655 1.617 sum -3.937 -11.227 -8.657 14.714 Atomic orbital electron populations 1.69678 1.05048 1.25518 1.57565 1.24737 0.95514 0.97650 1.02892 0.86129 0.78796 0.84143 0.77162 1.20579 1.21920 1.21889 1.19255 0.91060 0.84028 1.42873 0.91100 1.42352 1.06003 0.99709 1.89565 1.20915 0.93028 0.85083 0.98976 1.20749 0.90062 0.92809 0.89845 0.89086 1.45867 1.14192 1.54570 1.21209 1.20037 0.81956 0.79112 0.88128 1.90630 1.75600 1.40320 1.33291 1.21892 0.87181 0.92923 0.96457 0.90495 1.22136 1.01186 0.94429 1.00658 1.21568 0.95600 1.00624 0.97889 1.22225 0.98475 0.96220 1.02713 1.22624 0.92157 0.96365 0.90468 1.88047 1.28007 1.68638 1.42604 1.22706 1.00799 0.92610 1.01929 1.22869 1.02894 1.04075 0.91601 1.23349 1.01647 0.96685 1.00710 0.93581 0.77990 0.95573 0.94777 0.76073 0.89941 0.89389 0.91850 0.90823 0.90965 0.90773 0.93301 0.88672 0.87252 0.89184 0.89518 0.89745 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.66 5.43 -59.90 -0.33 -17.99 16 10 C 0.15 2.83 5.80 -4.04 -0.02 2.81 16 11 C 0.17 2.87 2.59 -67.93 -0.18 2.70 16 12 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 13 N -0.71 -11.15 3.02 -53.81 -0.16 -11.32 16 14 C 0.52 8.78 6.02 -10.99 -0.07 8.71 16 15 O -0.52 -10.55 13.54 -14.30 -0.19 -10.74 16 16 C 0.08 1.08 3.05 -27.83 -0.09 1.00 16 17 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.15 -2.02 5.37 -26.59 -0.14 -2.17 16 19 C -0.12 -1.32 6.03 -26.55 -0.16 -1.48 16 20 C -0.16 -1.61 6.14 -26.59 -0.16 -1.77 16 21 C 0.06 0.65 6.84 37.21 0.25 0.91 16 22 O -0.36 -5.35 9.94 -55.09 -0.55 -5.90 16 23 C -0.16 -2.32 5.70 -90.62 -0.52 -2.83 16 24 C -0.18 -2.31 9.74 -26.69 -0.26 -2.57 16 25 C -0.19 -2.69 9.82 -26.69 -0.26 -2.95 16 26 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.39 9.94 7.33 -40.82 -0.30 9.64 16 28 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.40 5.99 8.45 -40.82 -0.34 5.64 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.09 1.26 7.99 -51.93 -0.41 0.84 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.11 1.45 8.11 -51.93 -0.42 1.03 16 40 H 0.09 1.18 6.67 -51.93 -0.35 0.83 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 43 H 0.12 1.99 5.02 -51.93 -0.26 1.73 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -31.48 343.46 -9.30 -40.78 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -7.10 Total: 14.37 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.85 Total: -4.73 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.24 Total: -55.85 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.74 Total: -16.64 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.48 -9.30 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498749909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.509 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds