Wall clock time and date at job start Tue Mar 31 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48501 * 109.47085 * 89.99628 * 3 2 1 5 5 H 1.48497 * 109.46789 * 209.99638 * 3 2 1 6 6 H 1.48490 * 109.47245 * 329.99787 * 3 2 1 7 7 C 1.38806 * 120.00103 * 179.71988 * 2 1 3 8 8 H 1.07998 * 120.00378 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47425 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47367 * 64.99309 * 11 10 9 13 13 N 1.46505 * 109.46951 * 304.99806 * 11 10 9 14 14 C 1.34770 * 120.00421 * 154.99748 * 13 11 10 15 15 O 1.21291 * 119.99855 * 0.02562 * 14 13 11 16 16 C 1.50693 * 120.00498 * 179.97438 * 14 13 11 17 17 H 1.09001 * 109.48513 * 304.98202 * 16 14 13 18 18 C 1.53095 * 109.47864 * 64.99891 * 16 14 13 19 19 C 1.53175 * 109.16441 * 177.59050 * 18 16 14 20 20 C 1.53176 * 109.04009 * 303.02612 * 19 18 16 21 21 C 1.53097 * 109.16360 * 56.97480 * 20 19 18 22 22 O 1.42896 * 109.41697 * 302.39523 * 21 20 19 23 23 C 1.52996 * 109.47372 * 184.99897 * 11 10 9 24 24 C 1.52999 * 117.49977 * 248.74287 * 23 11 10 25 25 C 1.53001 * 117.50112 * 180.08275 * 23 11 10 26 26 H 0.96999 * 120.00174 * 0.02562 * 1 2 3 27 27 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.47027 * 299.99556 * 10 9 7 29 29 H 1.08993 * 109.47264 * 59.99499 * 10 9 7 30 30 H 0.97003 * 119.99576 * 334.99627 * 13 11 10 31 31 H 1.08994 * 109.52966 * 297.50602 * 18 16 14 32 32 H 1.09007 * 109.51481 * 57.62897 * 18 16 14 33 33 H 1.09005 * 109.54204 * 62.89011 * 19 18 16 34 34 H 1.08997 * 109.54806 * 183.07012 * 19 18 16 35 35 H 1.09001 * 109.52510 * 176.88694 * 20 19 18 36 36 H 1.09006 * 109.52505 * 297.07489 * 20 19 18 37 37 H 1.09004 * 109.47680 * 62.37948 * 21 20 19 38 38 H 1.09004 * 109.48001 * 182.40571 * 21 20 19 39 39 H 1.09003 * 115.55008 * 34.41656 * 23 11 10 40 40 H 1.09001 * 117.50021 * 0.02562 * 24 23 11 41 41 H 1.09005 * 117.49919 * 145.01421 * 24 23 11 42 42 H 1.08993 * 117.49878 * 214.97641 * 25 23 11 43 43 H 1.09004 * 117.49647 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6526 -0.7000 7 6 2.0103 -1.2021 0.0059 8 1 1.4704 -2.1374 0.0100 9 7 3.3796 -1.2020 0.0064 10 6 4.1122 -2.4707 0.0120 11 6 5.6165 -2.1911 0.0121 12 1 5.8936 -1.6939 0.9416 13 7 5.9527 -1.3275 -1.1226 14 6 7.0504 -0.5473 -1.0737 15 8 7.7604 -0.5603 -0.0903 16 6 7.3966 0.3406 -2.2410 17 1 7.4609 -0.2602 -3.1482 18 6 6.3112 1.4069 -2.4109 19 6 6.7000 2.3415 -3.5605 20 6 8.0735 2.9519 -3.2655 21 6 9.0908 1.8259 -3.0626 22 8 8.6535 0.9764 -2.0001 23 6 6.3806 -3.5112 -0.1077 24 6 7.1788 -3.9785 1.1110 25 6 7.9090 -3.4438 -0.1235 26 1 -0.4850 0.8400 -0.0004 27 1 3.8646 -0.3620 0.0023 28 1 3.8486 -3.0385 0.9044 29 1 3.8492 -3.0461 -0.8755 30 1 5.3851 -1.3174 -1.9092 31 1 5.3601 0.9256 -2.6384 32 1 6.2175 1.9812 -1.4891 33 1 6.7447 1.7757 -4.4912 34 1 5.9587 3.1354 -3.6517 35 1 8.3828 3.5755 -4.1043 36 1 8.0162 3.5581 -2.3614 37 1 9.1775 1.2446 -3.9807 38 1 10.0611 2.2537 -2.8102 39 1 5.9042 -4.2761 -0.7210 40 1 7.1592 -3.3458 1.9983 41 1 7.2278 -5.0510 1.2995 42 1 8.4382 -4.1647 -0.7466 43 1 8.3702 -2.4589 -0.0489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498749910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:11 Heat of formation + Delta-G solvation = -50.619244 kcal Electronic energy + Delta-G solvation = -23390.598611 eV Core-core repulsion = 20050.736386 eV Total energy + Delta-G solvation = -3339.862225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38026 -38.90043 -37.03373 -35.20266 -33.95071 -33.39279 -31.80742 -31.06570 -28.49961 -25.72269 -24.09073 -23.84025 -22.18357 -21.37782 -20.98634 -20.34395 -20.10440 -17.97497 -17.14659 -16.77394 -15.86526 -15.58476 -15.42168 -14.91162 -14.72620 -14.48148 -14.34818 -13.96790 -13.62938 -13.20073 -12.87165 -12.80200 -12.72406 -12.23980 -11.93569 -11.66285 -11.42440 -11.32525 -11.25149 -11.16522 -11.04419 -10.90346 -10.62532 -10.22903 -10.15737 -9.96293 -9.68507 -9.64719 -9.41815 -8.97636 -8.76632 -7.31020 -5.82308 -3.18739 2.72348 2.89122 3.30639 3.36967 3.41703 3.85297 4.15544 4.53697 4.56798 4.62823 4.65066 4.72814 4.78063 4.91377 4.97664 5.11350 5.21544 5.23446 5.32429 5.38547 5.47167 5.50924 5.58785 5.60855 5.73308 5.74617 5.82410 5.85876 5.89761 5.91953 6.07649 6.11237 6.28833 6.37718 6.46674 6.55513 6.78359 6.97996 7.70659 7.92955 8.35873 8.40046 9.14737 9.86829 10.06303 11.35768 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.007273 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.393602 B = 3849.088231 C = 5951.926775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.755 5.755 10 C 0.153 3.847 11 C 0.166 3.834 12 H 0.088 0.912 13 N -0.709 5.709 14 C 0.522 3.478 15 O -0.523 6.523 16 C 0.077 3.923 17 H 0.082 0.918 18 C -0.151 4.151 19 C -0.120 4.120 20 C -0.159 4.159 21 C 0.060 3.940 22 O -0.354 6.354 23 C -0.164 4.164 24 C -0.170 4.170 25 C -0.185 4.185 26 H 0.260 0.740 27 H 0.362 0.638 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.404 0.596 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.564 -0.232 -8.289 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.202 1.202 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.025 3.975 11 C 0.062 3.938 12 H 0.107 0.893 13 N -0.361 5.361 14 C 0.307 3.693 15 O -0.399 6.399 16 C 0.015 3.985 17 H 0.099 0.901 18 C -0.189 4.189 19 C -0.158 4.158 20 C -0.197 4.197 21 C -0.017 4.017 22 O -0.272 6.272 23 C -0.184 4.184 24 C -0.207 4.207 25 C -0.222 4.222 26 H 0.070 0.930 27 H 0.196 0.804 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.239 0.761 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.931 -0.347 -7.397 19.399 hybrid contribution -0.014 1.274 -0.678 1.443 sum 17.916 0.927 -8.074 19.674 Atomic orbital electron populations 1.69698 1.05078 1.25853 1.57343 1.24658 0.95195 0.97130 1.01926 0.86600 0.79116 0.85072 0.77997 1.21117 1.20199 1.21751 1.19037 0.80457 0.94772 1.43277 0.89099 1.42692 1.04082 1.02080 1.91261 1.20901 0.86840 0.89829 0.99884 1.20880 0.95200 0.88111 0.89630 0.89349 1.45928 1.26426 1.42837 1.20929 1.20054 0.81066 0.79989 0.88206 1.90632 1.49981 1.66109 1.33190 1.21883 0.86097 0.93827 0.96659 0.90066 1.22203 0.98366 0.97723 1.00578 1.21578 0.97075 0.99263 0.97870 1.22227 0.95884 0.98783 1.02758 1.22637 0.97563 0.90981 0.90470 1.88048 1.34888 1.62033 1.42263 1.22628 0.93761 0.99039 1.02925 1.22903 1.04350 1.00803 0.92694 1.23275 0.93925 1.04145 1.00879 0.93014 0.80449 0.93703 0.94827 0.76130 0.89636 0.90313 0.91507 0.90864 0.90759 0.90835 0.93131 0.88529 0.87655 0.88735 0.89083 0.89805 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 21.78 27.73 -169.99 -4.71 17.07 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 7 C -0.25 -6.74 10.47 -15.06 -0.16 -6.90 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.18 5.24 -59.91 -0.31 -17.49 16 10 C 0.15 2.80 5.80 -4.04 -0.02 2.77 16 11 C 0.17 2.64 2.43 -67.93 -0.17 2.48 16 12 H 0.09 1.60 7.34 -51.93 -0.38 1.21 16 13 N -0.71 -10.60 4.46 -53.81 -0.24 -10.84 16 14 C 0.52 8.29 6.51 -10.99 -0.07 8.21 16 15 O -0.52 -9.98 13.53 -14.31 -0.19 -10.18 16 16 C 0.08 1.01 3.05 -27.84 -0.09 0.93 16 17 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.15 -1.93 5.37 -26.59 -0.14 -2.08 16 19 C -0.12 -1.21 6.03 -26.55 -0.16 -1.37 16 20 C -0.16 -1.47 6.14 -26.59 -0.16 -1.63 16 21 C 0.06 0.60 6.84 37.21 0.25 0.85 16 22 O -0.35 -5.02 9.94 -55.09 -0.55 -5.56 16 23 C -0.16 -2.23 5.36 -90.62 -0.49 -2.72 16 24 C -0.17 -2.19 10.18 -26.69 -0.27 -2.46 16 25 C -0.19 -2.52 9.74 -26.69 -0.26 -2.78 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.36 8.23 5.20 -40.82 -0.21 8.02 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.40 5.51 8.45 -40.82 -0.34 5.17 16 31 H 0.09 1.10 7.99 -51.93 -0.41 0.69 16 32 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.11 1.32 8.11 -51.93 -0.42 0.90 16 40 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.12 1.88 5.02 -51.93 -0.26 1.62 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -32.68 343.26 -9.01 -41.69 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -7.12 Total: 12.76 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.83 Total: -4.59 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.22 Total: -56.36 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.74 Total: -15.74 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.68 -9.01 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498749910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.932 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds