Wall clock time and date at job start Tue Mar 31 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 119.99775 * 2 1 4 4 H 1.48493 * 109.47194 * 269.99794 * 3 2 1 5 5 H 1.48505 * 109.47058 * 29.99601 * 3 2 1 6 6 H 1.48495 * 109.46784 * 149.99792 * 3 2 1 7 7 C 1.38811 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99647 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00011 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00031 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47398 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46875 * 65.00186 * 11 10 9 13 13 N 1.46498 * 109.46962 * 305.00468 * 11 10 9 14 14 C 1.34776 * 120.00072 * 155.00123 * 13 11 10 15 15 O 1.21279 * 120.00005 * 359.97438 * 14 13 11 16 16 C 1.50699 * 120.00281 * 179.97438 * 14 13 11 17 17 H 1.08998 * 109.48784 * 55.02824 * 16 14 13 18 18 C 1.53091 * 109.48010 * 294.99861 * 16 14 13 19 19 C 1.53176 * 109.21206 * 182.43847 * 18 16 14 20 20 C 1.53174 * 109.03724 * 56.94941 * 19 18 16 21 21 C 1.53084 * 109.16456 * 303.01556 * 20 19 18 22 22 O 1.42906 * 109.41372 * 57.61236 * 21 20 19 23 23 C 1.52996 * 109.47424 * 184.99969 * 11 10 9 24 24 C 1.53001 * 117.50043 * 248.74936 * 23 11 10 25 25 C 1.52994 * 117.50221 * 180.08982 * 23 11 10 26 26 H 0.97000 * 120.00048 * 0.02562 * 1 2 3 27 27 H 0.97004 * 120.00167 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47264 * 59.99994 * 10 9 7 29 29 H 1.09000 * 109.47375 * 299.99977 * 10 9 7 30 30 H 0.96997 * 120.00073 * 334.99482 * 13 11 10 31 31 H 1.09002 * 109.52401 * 62.50000 * 18 16 14 32 32 H 1.09004 * 109.52068 * 302.37645 * 18 16 14 33 33 H 1.09004 * 109.53956 * 176.81728 * 19 18 16 34 34 H 1.08995 * 109.54545 * 297.07504 * 19 18 16 35 35 H 1.09007 * 109.52410 * 62.92341 * 20 19 18 36 36 H 1.09003 * 109.52246 * 183.11215 * 20 19 18 37 37 H 1.09004 * 109.48326 * 177.59400 * 21 20 19 38 38 H 1.08997 * 109.48095 * 297.62758 * 21 20 19 39 39 H 1.08998 * 115.54884 * 34.41648 * 23 11 10 40 40 H 1.09000 * 117.50060 * 359.97438 * 24 23 11 41 41 H 1.09002 * 117.49861 * 145.01693 * 24 23 11 42 42 H 1.09003 * 117.50347 * 214.98322 * 25 23 11 43 43 H 1.09010 * 117.49817 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0639 -4.8197 0.0021 12 1 0.4981 -4.8143 -0.9296 13 7 0.1440 -4.6753 1.1330 14 6 -1.0804 -5.2362 1.0815 15 8 -1.4208 -5.8602 0.0988 16 6 -2.0266 -5.0881 2.2451 17 1 -2.1594 -4.0307 2.4735 18 6 -1.4487 -5.8059 3.4676 19 6 -2.4426 -5.7037 4.6286 20 6 -3.7863 -6.2936 4.1895 21 6 -4.2747 -5.5560 2.9402 22 8 -3.2907 -5.6643 1.9095 23 6 1.8247 -6.1410 0.1290 24 6 1.8348 -7.0700 -1.0867 25 6 1.0022 -7.4310 0.1460 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 -0.0002 28 1 2.6841 -3.7141 0.8922 29 1 2.6855 -3.7149 -0.8878 30 1 0.4161 -4.1760 1.9188 31 1 -0.5062 -5.3385 3.7527 32 1 -1.2768 -6.8550 3.2265 33 1 -2.0619 -6.2611 5.4846 34 1 -2.5760 -4.6574 4.9034 35 1 -3.6624 -7.3525 3.9623 36 1 -4.5155 -6.1749 4.9909 37 1 -5.2096 -5.9999 2.5981 38 1 -4.4370 -4.5049 3.1788 39 1 2.7232 -6.1089 0.7452 40 1 1.2990 -6.7401 -1.9768 41 1 2.7398 -7.6493 -1.2700 42 1 1.3597 -8.2477 0.7732 43 1 -0.0810 -7.3383 0.0672 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498749911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:13 Heat of formation + Delta-G solvation = -54.458539 kcal Electronic energy + Delta-G solvation = -23133.091576 eV Core-core repulsion = 19793.062867 eV Total energy + Delta-G solvation = -3340.028709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23409 -38.76873 -36.90126 -35.00224 -33.86945 -33.28121 -31.71365 -30.78029 -28.07429 -25.58183 -24.06382 -23.87188 -22.12452 -21.50935 -20.86982 -20.27967 -19.93821 -17.50704 -16.93261 -16.59629 -15.73357 -15.71570 -14.97552 -14.91979 -14.72144 -14.41671 -14.27719 -13.91005 -13.29175 -13.14925 -12.94657 -12.75674 -12.61098 -12.10843 -11.65125 -11.58797 -11.35515 -11.20811 -11.13158 -11.01813 -10.89999 -10.82411 -10.55410 -10.19111 -10.08002 -9.92307 -9.69138 -9.57246 -9.26510 -8.92699 -8.59338 -6.98016 -5.79816 -3.09804 2.90610 3.05329 3.41439 3.46650 3.48150 3.96672 4.25165 4.54310 4.63048 4.66472 4.69694 4.83079 4.91568 5.06937 5.11561 5.20249 5.30693 5.35364 5.43985 5.49236 5.54300 5.58335 5.64645 5.74633 5.79850 5.83238 5.87789 5.88709 5.92842 6.09763 6.11811 6.23722 6.38861 6.49781 6.55875 6.68334 6.93668 7.12203 7.66527 7.89225 8.37958 8.58261 9.49814 10.05480 10.41000 11.42520 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013677 B = 0.005152 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.767229 B = 5433.056136 C = 6891.884469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.170 3.830 12 H 0.088 0.912 13 N -0.704 5.704 14 C 0.525 3.475 15 O -0.526 6.526 16 C 0.074 3.926 17 H 0.086 0.914 18 C -0.143 4.143 19 C -0.121 4.121 20 C -0.157 4.157 21 C 0.059 3.941 22 O -0.354 6.354 23 C -0.163 4.163 24 C -0.171 4.171 25 C -0.185 4.185 26 H 0.255 0.745 27 H 0.386 0.614 28 H 0.025 0.975 29 H 0.036 0.964 30 H 0.403 0.597 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 -14.226 9.198 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.066 3.934 12 H 0.106 0.894 13 N -0.356 5.356 14 C 0.310 3.690 15 O -0.402 6.402 16 C 0.012 3.988 17 H 0.104 0.896 18 C -0.181 4.181 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.018 4.018 22 O -0.272 6.272 23 C -0.183 4.183 24 C -0.209 4.209 25 C -0.222 4.222 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.238 0.762 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.495 -14.625 8.307 17.179 hybrid contribution 0.397 1.370 0.689 1.584 sum -3.097 -13.256 8.996 16.317 Atomic orbital electron populations 1.69672 1.05117 1.25709 1.57460 1.24750 0.95498 0.97704 1.02830 0.86188 0.78607 0.83785 0.77569 1.21688 1.21799 1.20754 1.19214 0.91042 0.84038 1.43066 0.91108 1.42355 1.06008 0.99727 1.89587 1.20918 0.92999 0.85065 0.98980 1.20801 0.90021 0.92754 0.89850 0.89405 1.45833 1.14165 1.54634 1.20950 1.19971 0.82072 0.79056 0.87860 1.90618 1.75729 1.40667 1.33227 1.21906 0.85352 0.98397 0.93120 0.89587 1.22115 0.99391 1.02185 0.94456 1.21590 0.94965 1.01693 0.97650 1.22214 0.97691 1.01143 0.98465 1.22641 0.91576 0.99694 0.87936 1.88050 1.19865 1.79899 1.39361 1.22650 1.01451 0.91470 1.02702 1.22896 1.01999 1.03150 0.92835 1.23268 1.00741 0.97395 1.00797 0.93473 0.78000 0.95727 0.94643 0.76181 0.90131 0.90558 0.91154 0.91358 0.91006 0.90856 0.88582 0.92918 0.87897 0.88735 0.89232 0.89949 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.99 5.43 -59.91 -0.33 -18.32 16 10 C 0.15 2.88 5.80 -4.04 -0.02 2.86 16 11 C 0.17 2.90 2.43 -67.93 -0.17 2.74 16 12 H 0.09 1.73 7.34 -51.93 -0.38 1.35 16 13 N -0.70 -11.32 4.46 -53.81 -0.24 -11.56 16 14 C 0.53 8.93 6.51 -10.99 -0.07 8.86 16 15 O -0.53 -10.66 13.54 -14.27 -0.19 -10.86 16 16 C 0.07 1.04 3.06 -27.84 -0.09 0.96 16 17 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 18 C -0.14 -1.57 5.37 -26.59 -0.14 -1.71 16 19 C -0.12 -1.09 6.03 -26.55 -0.16 -1.25 16 20 C -0.16 -1.40 6.14 -26.60 -0.16 -1.56 16 21 C 0.06 0.64 6.84 37.20 0.25 0.89 16 22 O -0.35 -5.41 9.95 -55.06 -0.55 -5.95 16 23 C -0.16 -2.34 5.36 -90.62 -0.49 -2.83 16 24 C -0.17 -2.32 10.18 -26.70 -0.27 -2.59 16 25 C -0.19 -2.62 9.74 -26.70 -0.26 -2.88 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.39 10.16 7.33 -40.82 -0.30 9.86 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.40 6.04 8.45 -40.82 -0.34 5.70 16 31 H 0.08 0.79 7.99 -51.93 -0.41 0.37 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 40 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.12 1.97 5.02 -51.92 -0.26 1.71 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -32.17 346.39 -9.36 -41.53 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -7.16 Total: 13.72 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -1.82 Total: -3.73 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.16 Total: -56.99 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.74 Total: -16.81 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.17 -9.36 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498749911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.925 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds