Wall clock time and date at job start Tue Mar 31 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99710 * 2 1 4 4 H 1.48496 * 109.47120 * 239.99632 * 3 2 1 5 5 H 1.48494 * 109.47312 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46772 * 119.99937 * 3 2 1 7 7 C 1.38810 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99926 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00248 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00320 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47299 * 295.00407 * 11 10 9 13 13 N 1.46506 * 109.46945 * 54.99936 * 11 10 9 14 14 C 1.34773 * 119.99968 * 204.99736 * 13 11 10 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 11 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 11 17 17 H 1.09002 * 109.47810 * 304.72892 * 16 14 13 18 18 C 1.53085 * 109.47866 * 64.74842 * 16 14 13 19 19 C 1.53180 * 109.16380 * 177.58389 * 18 16 14 20 20 C 1.53183 * 109.04131 * 303.03704 * 19 18 16 21 21 C 1.53087 * 109.16403 * 56.97487 * 20 19 18 22 22 O 1.42898 * 109.48069 * 184.70666 * 16 14 13 23 23 C 1.52993 * 109.47383 * 175.00048 * 11 10 9 24 24 C 1.53005 * 117.50120 * 248.62386 * 23 11 10 25 25 C 1.53004 * 60.00184 * 252.50855 * 24 23 11 26 26 H 0.97001 * 120.00057 * 359.97438 * 1 2 3 27 27 H 0.97007 * 119.99924 * 0.02562 * 9 7 2 28 28 H 1.09005 * 109.46557 * 60.00039 * 10 9 7 29 29 H 1.08997 * 109.47093 * 300.00270 * 10 9 7 30 30 H 0.96998 * 119.99507 * 25.00591 * 13 11 10 31 31 H 1.09001 * 109.52592 * 297.49999 * 18 16 14 32 32 H 1.08999 * 109.52888 * 57.68753 * 18 16 14 33 33 H 1.09001 * 109.54661 * 183.16230 * 19 18 16 34 34 H 1.09002 * 109.53295 * 62.89920 * 19 18 16 35 35 H 1.08993 * 109.51999 * 297.06590 * 20 19 18 36 36 H 1.09005 * 109.51602 * 176.87999 * 20 19 18 37 37 H 1.08994 * 109.48314 * 182.40749 * 21 20 19 38 38 H 1.09004 * 109.48965 * 62.37732 * 21 20 19 39 39 H 1.09004 * 115.54978 * 34.33174 * 23 11 10 40 40 H 1.08994 * 117.49425 * 359.97438 * 24 23 11 41 41 H 1.08997 * 117.49502 * 145.02193 * 24 23 11 42 42 H 1.09004 * 117.49964 * 252.51177 * 25 24 23 43 43 H 1.08995 * 117.49915 * 107.48627 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.4980 -4.8134 0.9327 13 7 0.1440 -4.6763 -1.1300 14 6 -1.0804 -5.2371 -1.0781 15 8 -1.4189 -5.8648 -0.0970 16 6 -2.0265 -5.0901 -2.2419 17 1 -2.1625 -4.0326 -2.4684 18 6 -1.4456 -5.8036 -3.4653 19 6 -2.4398 -5.7015 -4.6262 20 6 -3.7818 -6.2966 -4.1886 21 6 -4.2724 -5.5638 -2.9373 22 8 -3.2880 -5.6718 -1.9069 23 6 1.8247 -6.1411 -0.1245 24 6 1.6639 -6.9278 -1.4269 25 6 1.0020 -7.4311 -0.1426 26 1 -0.4850 0.8400 0.0004 27 1 0.3555 -2.3881 -0.0002 28 1 2.6847 -3.7144 0.8906 29 1 2.6848 -3.7145 -0.8894 30 1 0.4162 -4.1777 -1.9162 31 1 -0.5045 -5.3325 -3.7491 32 1 -1.2712 -6.8528 -3.2266 33 1 -2.0575 -6.2554 -5.4836 34 1 -2.5764 -4.6548 -4.8980 35 1 -3.6548 -7.3556 -3.9643 36 1 -4.5113 -6.1779 -4.9898 37 1 -5.2059 -6.0113 -2.5964 38 1 -4.4380 -4.5125 -3.1729 39 1 2.7979 -6.1717 0.3654 40 1 1.0158 -6.5040 -2.1940 41 1 2.5314 -7.4760 -1.7941 42 1 1.4341 -8.3103 0.3352 43 1 -0.0812 -7.3382 -0.0649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498749912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:16 Heat of formation + Delta-G solvation = -50.198990 kcal Electronic energy + Delta-G solvation = -23330.298990 eV Core-core repulsion = 19990.454989 eV Total energy + Delta-G solvation = -3339.844001 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37709 -38.86300 -36.84589 -34.89434 -33.87167 -33.21030 -31.76400 -30.79157 -28.17109 -25.60489 -24.06000 -23.96473 -22.21911 -21.49067 -20.99716 -20.26052 -19.62637 -17.51649 -17.04032 -16.47437 -15.96208 -15.68258 -15.37241 -14.81011 -14.68632 -14.36227 -14.09415 -13.91259 -13.29284 -13.23550 -12.92472 -12.78098 -12.59329 -12.09410 -11.66415 -11.51243 -11.37889 -11.33877 -11.26166 -11.10495 -10.90189 -10.81462 -10.56820 -10.23813 -10.09149 -9.79855 -9.60016 -9.55906 -9.29413 -8.92360 -8.61861 -6.97862 -5.79513 -3.09464 2.87018 3.06135 3.41873 3.46643 3.47571 4.01828 4.14861 4.54450 4.59931 4.64756 4.67175 4.81308 4.92781 5.05217 5.09885 5.21014 5.23430 5.32785 5.42769 5.52804 5.56527 5.58220 5.63662 5.73204 5.77810 5.81018 5.85169 5.88235 6.02877 6.04452 6.09263 6.24520 6.33348 6.49105 6.56603 6.69595 6.92176 7.10469 7.66180 7.85605 8.38303 8.55001 9.50074 10.05805 10.41312 11.42770 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.005081 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.744612 B = 5509.769883 C = 6712.078795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.170 3.830 12 H 0.091 0.909 13 N -0.706 5.706 14 C 0.523 3.477 15 O -0.522 6.522 16 C 0.073 3.927 17 H 0.087 0.913 18 C -0.145 4.145 19 C -0.121 4.121 20 C -0.157 4.157 21 C 0.058 3.942 22 O -0.353 6.353 23 C -0.160 4.160 24 C -0.178 4.178 25 C -0.187 4.187 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.034 0.966 29 H 0.026 0.974 30 H 0.404 0.596 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.461 -14.096 -9.810 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.065 3.935 12 H 0.109 0.891 13 N -0.358 5.358 14 C 0.308 3.692 15 O -0.398 6.398 16 C 0.012 3.988 17 H 0.105 0.895 18 C -0.183 4.183 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.019 4.019 22 O -0.271 6.271 23 C -0.180 4.180 24 C -0.216 4.216 25 C -0.224 4.224 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.239 0.761 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.622 -14.500 -8.903 17.397 hybrid contribution 0.411 1.369 -0.670 1.578 sum -3.211 -13.131 -9.573 16.565 Atomic orbital electron populations 1.69656 1.05119 1.25828 1.57382 1.24743 0.95493 0.97693 1.02815 0.86262 0.78508 0.83505 0.77849 1.21283 1.21710 1.21238 1.19168 0.91006 0.84055 1.43188 0.91172 1.42345 1.05995 0.99717 1.89600 1.20912 0.93026 0.85073 0.98974 1.20752 0.90048 0.92816 0.89849 0.89078 1.45864 1.14182 1.54799 1.20974 1.20006 0.82050 0.79183 0.87921 1.90629 1.75616 1.40308 1.33264 1.21912 0.85455 0.98399 0.93068 0.89539 1.22151 0.99400 1.02206 0.94536 1.21589 0.94959 1.01700 0.97623 1.22214 0.97690 1.01150 0.98456 1.22645 0.91563 0.99736 0.87921 1.88056 1.19981 1.79614 1.39461 1.22701 1.00776 0.92521 1.02025 1.22895 1.02927 1.04052 0.91683 1.23339 1.01663 0.96736 1.00665 0.93422 0.78003 0.94783 0.95575 0.76070 0.90155 0.90473 0.91116 0.91341 0.90989 0.90829 0.88561 0.92902 0.87265 0.88989 0.89576 0.89781 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.92 5.43 -59.91 -0.33 -18.25 16 10 C 0.15 2.86 5.80 -4.05 -0.02 2.83 16 11 C 0.17 2.88 2.59 -67.93 -0.18 2.71 16 12 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 13 N -0.71 -11.19 3.01 -53.81 -0.16 -11.35 16 14 C 0.52 8.80 6.02 -10.98 -0.07 8.73 16 15 O -0.52 -10.54 13.52 -14.30 -0.19 -10.74 16 16 C 0.07 1.03 3.05 -27.84 -0.09 0.94 16 17 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.14 -1.56 5.18 -26.59 -0.14 -1.69 16 19 C -0.12 -1.08 6.03 -26.54 -0.16 -1.24 16 20 C -0.16 -1.39 6.14 -26.59 -0.16 -1.55 16 21 C 0.06 0.63 6.84 37.20 0.25 0.88 16 22 O -0.35 -5.36 9.94 -55.09 -0.55 -5.91 16 23 C -0.16 -2.30 5.71 -90.62 -0.52 -2.82 16 24 C -0.18 -2.28 9.73 -26.73 -0.26 -2.54 16 25 C -0.19 -2.67 9.82 -26.72 -0.26 -2.93 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.39 10.12 7.33 -40.82 -0.30 9.82 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.40 6.01 8.43 -40.82 -0.34 5.67 16 31 H 0.08 0.77 7.97 -51.93 -0.41 0.36 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.11 1.44 8.11 -51.93 -0.42 1.02 16 40 H 0.09 1.16 6.48 -51.93 -0.34 0.83 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.12 1.97 5.01 -51.93 -0.26 1.71 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -32.09 343.00 -9.29 -41.38 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -7.09 Total: 13.61 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.84 Total: -3.87 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.24 Total: -56.68 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.74 Total: -16.65 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.09 -9.29 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498749912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.823 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds