Wall clock time and date at job start Tue Mar 31 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47325 * 294.99862 * 11 10 9 13 13 N 1.46500 * 109.47170 * 54.99826 * 11 10 9 14 14 C 1.34779 * 120.00196 * 204.99986 * 13 11 10 15 15 O 1.21277 * 119.99823 * 0.02562 * 14 13 11 16 16 C 1.50698 * 119.99934 * 180.02562 * 14 13 11 17 17 C 1.53004 * 109.47055 * 180.02562 * 16 14 13 18 18 O 1.42900 * 112.84964 * 53.80412 * 17 16 14 19 19 C 1.53778 * 113.61385 * 282.49694 * 17 16 14 20 20 C 1.53779 * 87.08321 * 220.01829 * 19 17 16 21 21 C 1.53779 * 113.61582 * 184.99942 * 17 16 14 22 22 C 1.52994 * 109.47404 * 174.99693 * 11 10 9 23 23 C 1.52999 * 117.50412 * 248.74803 * 22 11 10 24 24 C 1.53002 * 117.50104 * 180.08511 * 22 11 10 25 25 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 29 29 H 0.96998 * 120.00051 * 24.99940 * 13 11 10 30 30 H 1.09001 * 109.47074 * 299.99924 * 16 14 13 31 31 H 1.09000 * 109.47173 * 60.00158 * 16 14 13 32 32 H 0.96704 * 113.99508 * 309.66227 * 18 17 16 33 33 H 1.09004 * 113.61022 * 334.56856 * 19 17 16 34 34 H 1.09000 * 113.61864 * 105.46643 * 19 17 16 35 35 H 1.08994 * 113.61745 * 270.88429 * 20 19 17 36 36 H 1.09001 * 113.61533 * 139.97501 * 20 19 17 37 37 H 1.08998 * 113.61583 * 254.52897 * 21 17 16 38 38 H 1.09006 * 113.61596 * 25.42983 * 21 17 16 39 39 H 1.09003 * 115.54830 * 34.41759 * 22 11 10 40 40 H 1.09003 * 117.49323 * 359.97438 * 23 22 11 41 41 H 1.09003 * 117.50071 * 145.01968 * 23 22 11 42 42 H 1.09000 * 117.50257 * 214.97832 * 24 22 11 43 43 H 1.09002 * 117.49965 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4975 -4.8139 0.9289 13 7 0.1449 -4.6758 -1.1340 14 6 -1.0795 -5.2367 -1.0832 15 8 -1.4206 -5.8602 -0.1005 16 6 -2.0247 -5.0892 -2.2477 17 6 -3.3357 -5.8135 -1.9353 18 8 -3.9192 -5.3965 -0.6993 19 6 -3.2486 -7.3407 -2.0932 20 6 -4.6530 -7.2776 -2.7164 21 6 -4.3271 -5.8274 -3.1108 22 6 1.8249 -6.1410 -0.1280 23 6 1.6674 -6.9257 -1.4320 24 6 1.0021 -7.4308 -0.1493 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0016 27 1 2.6855 -3.7140 -0.8911 28 1 2.6842 -3.7148 0.8888 29 1 0.4176 -4.1769 -1.9198 30 1 -2.2263 -4.0320 -2.4203 31 1 -1.5729 -5.5234 -3.1396 32 1 -3.3064 -5.4081 0.0486 33 1 -2.4756 -7.6641 -2.7905 34 1 -3.2154 -7.8766 -1.1447 35 1 -5.4586 -7.3612 -1.9869 36 1 -4.7825 -7.9435 -3.5696 37 1 -5.1647 -5.1416 -2.9837 38 1 -3.8491 -5.7371 -4.0863 39 1 2.7971 -6.1723 0.3638 40 1 1.0213 -6.5006 -2.2002 41 1 2.5359 -7.4735 -1.7978 42 1 1.4332 -8.3108 0.3282 43 1 -0.0813 -7.3380 -0.0732 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498760621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:23 Heat of formation + Delta-G solvation = -28.905529 kcal Electronic energy + Delta-G solvation = -23235.180929 eV Core-core repulsion = 19896.260281 eV Total energy + Delta-G solvation = -3338.920647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54366 -39.07543 -37.01568 -34.94461 -34.32623 -33.33662 -31.42838 -30.13165 -27.94606 -25.75410 -24.18701 -23.44783 -22.28802 -21.52589 -20.66760 -19.74916 -19.53886 -17.39782 -16.83733 -16.51044 -16.10867 -15.76475 -15.09166 -15.00766 -14.60777 -14.50745 -13.95899 -13.63807 -13.26651 -12.99627 -12.89473 -12.55054 -12.31203 -12.05935 -11.72337 -11.55497 -11.39007 -11.18970 -11.16646 -10.93085 -10.88716 -10.83220 -10.43437 -10.27207 -10.13341 -9.83267 -9.62537 -9.57282 -9.49688 -8.95123 -8.71677 -7.00591 -5.81623 -3.11957 2.75981 3.36660 3.40933 3.45472 3.46533 4.01640 4.17147 4.51732 4.53834 4.62412 4.71681 4.80980 4.87685 5.12463 5.15949 5.19677 5.27516 5.48362 5.50574 5.55437 5.59947 5.68048 5.71321 5.73574 5.79610 5.87058 5.96988 5.98402 6.06572 6.18268 6.24641 6.27117 6.32563 6.43950 6.48343 6.64647 6.86515 7.64039 7.74426 7.94196 8.35987 8.44616 9.47894 10.02874 10.38330 11.40517 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.004778 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.427724 B = 5858.279756 C = 7133.348275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.167 3.833 12 H 0.092 0.908 13 N -0.704 5.704 14 C 0.521 3.479 15 O -0.549 6.549 16 C -0.167 4.167 17 C 0.133 3.867 18 O -0.549 6.549 19 C -0.160 4.160 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.160 4.160 23 C -0.178 4.178 24 C -0.186 4.186 25 H 0.256 0.744 26 H 0.386 0.614 27 H 0.026 0.974 28 H 0.034 0.966 29 H 0.406 0.594 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.391 0.609 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -15.605 -7.046 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.019 3.981 11 C 0.062 3.938 12 H 0.110 0.890 13 N -0.354 5.354 14 C 0.309 3.691 15 O -0.430 6.430 16 C -0.207 4.207 17 C 0.091 3.909 18 O -0.361 6.361 19 C -0.198 4.198 20 C -0.173 4.173 21 C -0.167 4.167 22 C -0.180 4.180 23 C -0.215 4.215 24 C -0.223 4.223 25 H 0.066 0.934 26 H 0.220 0.780 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.241 0.759 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.247 0.753 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.805 -15.825 -6.693 17.599 hybrid contribution 1.043 1.206 -0.041 1.595 sum -2.762 -14.619 -6.735 16.331 Atomic orbital electron populations 1.69649 1.05109 1.25907 1.57222 1.24742 0.95498 0.97707 1.02695 0.86266 0.78526 0.83491 0.77856 1.21258 1.21660 1.21228 1.19161 0.91007 0.84056 1.43418 0.91192 1.42330 1.05957 0.99699 1.89640 1.20911 0.93065 0.85128 0.98945 1.20766 0.90250 0.92787 0.89969 0.89047 1.46025 1.14621 1.53873 1.20844 1.20538 0.82111 0.77955 0.88501 1.90453 1.75826 1.42378 1.34324 1.22368 0.95722 1.04641 0.97978 1.21709 0.90267 0.92483 0.86447 1.86323 1.42471 1.89110 1.18220 1.23561 0.97194 0.97331 1.01700 1.22739 0.97654 0.96406 1.00465 1.23065 0.99284 0.97737 0.96627 1.22695 1.00814 0.92528 1.01955 1.22875 1.02935 1.04064 0.91606 1.23340 1.01600 0.96722 1.00657 0.93368 0.78021 0.95645 0.94872 0.75873 0.87645 0.88175 0.75320 0.90043 0.90691 0.89939 0.91660 0.90511 0.89034 0.87335 0.89149 0.89563 0.89834 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.73 -17.66 5.43 -59.91 -0.33 -17.98 16 10 C 0.15 2.79 5.80 -4.04 -0.02 2.77 16 11 C 0.17 2.68 2.59 -67.94 -0.18 2.50 16 12 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 13 N -0.70 -10.33 3.05 -53.81 -0.16 -10.49 16 14 C 0.52 7.53 6.43 -10.99 -0.07 7.46 16 15 O -0.55 -8.94 10.62 -14.25 -0.15 -9.09 16 16 C -0.17 -2.01 5.34 -27.88 -0.15 -2.16 16 17 C 0.13 1.68 1.10 -89.81 -0.10 1.58 16 18 O -0.55 -8.59 13.39 -55.04 -0.74 -9.33 16 19 C -0.16 -1.80 7.16 -25.92 -0.19 -1.99 16 20 C -0.14 -1.38 8.02 -25.92 -0.21 -1.59 16 21 C -0.13 -1.37 7.47 -25.92 -0.19 -1.57 16 22 C -0.16 -2.18 5.70 -90.62 -0.52 -2.70 16 23 C -0.18 -2.15 9.74 -26.69 -0.26 -2.41 16 24 C -0.19 -2.44 9.82 -26.69 -0.26 -2.71 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.39 9.92 7.33 -40.82 -0.30 9.62 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.41 5.77 8.60 -40.82 -0.35 5.42 16 30 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.10 0.93 8.05 -51.93 -0.42 0.52 16 32 H 0.39 6.29 6.20 45.56 0.28 6.57 16 33 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.11 1.39 8.11 -51.93 -0.42 0.96 16 40 H 0.09 1.09 6.67 -51.93 -0.35 0.74 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.12 1.76 5.02 -51.93 -0.26 1.50 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -30.23 344.22 -9.28 -39.50 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -6.40 Total: 20.14 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.39 Total: -7.99 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.23 Total: -55.40 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.89 Total: -18.42 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.23 -9.28 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498760621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.597 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds