Wall clock time and date at job start Tue Mar 31 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47325 * 294.99862 * 11 10 9 13 13 N 1.46500 * 109.47170 * 54.99826 * 11 10 9 14 14 C 1.34779 * 120.00196 * 204.99986 * 13 11 10 15 15 O 1.21277 * 119.99823 * 0.02562 * 14 13 11 16 16 C 1.50698 * 119.99934 * 180.02562 * 14 13 11 17 17 C 1.53004 * 109.47055 * 180.02562 * 16 14 13 18 18 O 1.42900 * 112.84964 * 53.80412 * 17 16 14 19 19 C 1.53778 * 113.61385 * 282.49694 * 17 16 14 20 20 C 1.53779 * 87.08321 * 220.01829 * 19 17 16 21 21 C 1.53779 * 113.61582 * 184.99942 * 17 16 14 22 22 C 1.52994 * 109.47404 * 174.99693 * 11 10 9 23 23 C 1.52999 * 117.50412 * 248.74803 * 22 11 10 24 24 C 1.53002 * 117.50104 * 180.08511 * 22 11 10 25 25 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 29 29 H 0.96998 * 120.00051 * 24.99940 * 13 11 10 30 30 H 1.09001 * 109.47074 * 299.99924 * 16 14 13 31 31 H 1.09000 * 109.47173 * 60.00158 * 16 14 13 32 32 H 0.96704 * 113.99508 * 309.66227 * 18 17 16 33 33 H 1.09004 * 113.61022 * 334.56856 * 19 17 16 34 34 H 1.09000 * 113.61864 * 105.46643 * 19 17 16 35 35 H 1.08994 * 113.61745 * 270.88429 * 20 19 17 36 36 H 1.09001 * 113.61533 * 139.97501 * 20 19 17 37 37 H 1.08998 * 113.61583 * 254.52897 * 21 17 16 38 38 H 1.09006 * 113.61596 * 25.42983 * 21 17 16 39 39 H 1.09003 * 115.54830 * 34.41759 * 22 11 10 40 40 H 1.09003 * 117.49323 * 359.97438 * 23 22 11 41 41 H 1.09003 * 117.50071 * 145.01968 * 23 22 11 42 42 H 1.09000 * 117.50257 * 214.97832 * 24 22 11 43 43 H 1.09002 * 117.49965 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4975 -4.8139 0.9289 13 7 0.1449 -4.6758 -1.1340 14 6 -1.0795 -5.2367 -1.0832 15 8 -1.4206 -5.8602 -0.1005 16 6 -2.0247 -5.0892 -2.2477 17 6 -3.3357 -5.8135 -1.9353 18 8 -3.9192 -5.3965 -0.6993 19 6 -3.2486 -7.3407 -2.0932 20 6 -4.6530 -7.2776 -2.7164 21 6 -4.3271 -5.8274 -3.1108 22 6 1.8249 -6.1410 -0.1280 23 6 1.6674 -6.9257 -1.4320 24 6 1.0021 -7.4308 -0.1493 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0016 27 1 2.6855 -3.7140 -0.8911 28 1 2.6842 -3.7148 0.8888 29 1 0.4176 -4.1769 -1.9198 30 1 -2.2263 -4.0320 -2.4203 31 1 -1.5729 -5.5234 -3.1396 32 1 -3.3064 -5.4081 0.0486 33 1 -2.4756 -7.6641 -2.7905 34 1 -3.2154 -7.8766 -1.1447 35 1 -5.4586 -7.3612 -1.9869 36 1 -4.7825 -7.9435 -3.5696 37 1 -5.1647 -5.1416 -2.9837 38 1 -3.8491 -5.7371 -4.0863 39 1 2.7971 -6.1723 0.3638 40 1 1.0213 -6.5006 -2.2002 41 1 2.5359 -7.4735 -1.7978 42 1 1.4332 -8.3108 0.3282 43 1 -0.0813 -7.3380 -0.0732 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498760621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:23 Heat of formation + Delta-G solvation = -48.486195 kcal Electronic energy + Delta-G solvation = -23236.030010 eV Core-core repulsion = 19896.260281 eV Total energy + Delta-G solvation = -3339.769729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65186 -40.12164 -38.17844 -36.54748 -35.44337 -34.77196 -33.14666 -31.37833 -29.44531 -26.61619 -25.98569 -24.48567 -23.44442 -22.95364 -21.79866 -20.91677 -20.51150 -19.27103 -18.04664 -17.62633 -17.31460 -16.96395 -16.55885 -16.13911 -15.90617 -15.52412 -15.32251 -15.15399 -14.82567 -14.55028 -13.92512 -13.78314 -13.43303 -13.17759 -13.09972 -12.83919 -12.72131 -12.67823 -12.52971 -12.22258 -12.13421 -12.07802 -11.84193 -11.73637 -11.41005 -11.20409 -10.97946 -10.81504 -10.60628 -10.57212 -9.93630 -9.01765 -7.94704 -5.24403 1.48545 1.50837 1.57060 1.61623 2.22060 2.55777 2.97227 3.19258 3.39680 3.55292 3.64674 3.69696 3.77996 3.93974 3.99673 4.11110 4.18563 4.21913 4.42173 4.45907 4.49691 4.56129 4.66352 4.75389 4.81994 4.85519 4.87206 4.89507 5.07279 5.07439 5.15281 5.16695 5.27500 5.35057 5.41735 5.47608 5.49913 5.59729 6.25772 6.57327 6.76784 7.28875 7.33578 8.06763 8.30744 9.27946 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.004778 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.427724 B = 5858.279756 C = 7133.348275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.179 3.821 12 H 0.061 0.939 13 N -0.702 5.702 14 C 0.517 3.483 15 O -0.569 6.569 16 C -0.159 4.159 17 C 0.113 3.887 18 O -0.570 6.570 19 C -0.155 4.155 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.170 4.170 23 C -0.159 4.159 24 C -0.188 4.188 25 H 0.250 0.750 26 H 0.375 0.625 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.410 0.590 30 H 0.099 0.901 31 H 0.135 0.865 32 H 0.385 0.615 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 -16.635 -8.908 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.263 4.263 3 Si 0.801 3.199 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.023 3.977 11 C 0.074 3.926 12 H 0.079 0.921 13 N -0.352 5.352 14 C 0.306 3.694 15 O -0.451 6.451 16 C -0.199 4.199 17 C 0.071 3.929 18 O -0.382 6.382 19 C -0.193 4.193 20 C -0.168 4.168 21 C -0.161 4.161 22 C -0.189 4.189 23 C -0.196 4.196 24 C -0.225 4.225 25 H 0.059 0.941 26 H 0.207 0.793 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.245 0.755 30 H 0.117 0.883 31 H 0.153 0.847 32 H 0.239 0.761 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.449 -16.888 -8.571 19.097 hybrid contribution 0.649 1.454 0.575 1.693 sum -1.800 -15.435 -7.997 17.476 Atomic orbital electron populations 1.69813 1.06629 1.26099 1.59283 1.25523 0.96263 1.00998 1.03542 0.85239 0.77176 0.79273 0.78204 1.20072 1.22470 1.20682 1.19589 0.91572 0.85180 1.41505 0.90410 1.42495 1.05633 1.00860 1.89539 1.21028 0.93471 0.83993 0.99217 1.20444 0.89649 0.93157 0.89357 0.92081 1.45976 1.14720 1.54068 1.20460 1.21005 0.82070 0.77375 0.88959 1.90455 1.76065 1.43268 1.35330 1.22388 0.94928 1.04512 0.98066 1.22119 0.91180 0.93636 0.85960 1.86305 1.43103 1.89575 1.19259 1.23546 0.98580 0.95827 1.01323 1.22711 0.96491 0.96719 1.00862 1.23153 0.98459 0.97609 0.96913 1.22601 1.01024 0.91273 1.04042 1.22964 1.03209 1.02653 0.90803 1.23280 1.00505 0.96776 1.01900 0.94096 0.79328 0.94264 0.94875 0.75463 0.88251 0.84708 0.76129 0.88029 0.92692 0.91330 0.89179 0.91558 0.86177 0.86264 0.88904 0.87493 0.88414 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.25 -13.30 9.99 84.03 0.84 -12.47 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -35.96 5.43 -343.45 -1.87 -37.82 16 10 C 0.15 5.56 5.80 86.38 0.50 6.06 16 11 C 0.18 5.71 2.59 44.99 0.12 5.83 16 12 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 13 N -0.70 -20.28 3.05 -442.55 -1.35 -21.63 16 14 C 0.52 14.85 6.43 87.66 0.56 15.42 16 15 O -0.57 -19.00 10.62 15.92 0.17 -18.83 16 16 C -0.16 -3.63 5.34 29.85 0.16 -3.47 16 17 C 0.11 2.76 1.10 -10.27 -0.01 2.75 16 18 O -0.57 -18.47 13.39 -130.04 -1.74 -20.21 16 19 C -0.16 -3.28 7.16 31.12 0.22 -3.06 16 20 C -0.13 -2.44 8.02 31.12 0.25 -2.19 16 21 C -0.12 -2.40 7.47 31.12 0.23 -2.17 16 22 C -0.17 -4.35 5.70 -10.80 -0.06 -4.41 16 23 C -0.16 -3.41 9.74 30.62 0.30 -3.12 16 24 C -0.19 -4.63 9.82 30.62 0.30 -4.33 16 25 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 26 H 0.37 19.67 7.33 -92.71 -0.68 18.99 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.41 11.24 8.60 -92.71 -0.80 10.44 16 30 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.14 2.09 8.05 -2.39 -0.02 2.07 16 32 H 0.38 13.12 6.20 -74.05 -0.46 12.66 16 33 H 0.10 1.72 8.04 -2.38 -0.02 1.70 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.12 1.63 8.10 -2.38 -0.02 1.61 16 39 H 0.12 2.80 8.11 -2.39 -0.02 2.78 16 40 H 0.09 1.96 6.67 -2.39 -0.02 1.94 16 41 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.10 2.88 5.02 -2.39 -0.01 2.87 16 Total: -1.00 -65.60 344.22 0.49 -65.11 By element: Atomic # 1 Polarization: 53.85 SS G_CDS: -0.91 Total: 52.94 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 3.88 Total: -8.66 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -2.94 Total: -117.58 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.57 Total: -39.05 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -65.60 0.49 -65.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498760621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.626 kcal (2) G-P(sol) polarization free energy of solvation -65.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds