Wall clock time and date at job start Tue Mar 31 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99955 * 2 1 4 4 H 1.48503 * 109.47300 * 89.99387 * 3 2 1 5 5 H 1.48508 * 109.46759 * 329.99973 * 3 2 1 6 6 H 1.48499 * 109.47115 * 210.00025 * 3 2 1 7 7 C 1.38811 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00251 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00026 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47208 * 175.01965 * 10 9 7 12 12 H 1.09008 * 109.87567 * 304.44436 * 11 10 9 13 13 C 1.54329 * 109.88693 * 65.46042 * 11 10 9 14 14 C 1.55151 * 102.94296 * 141.61000 * 13 11 10 15 15 C 1.54908 * 101.58296 * 324.50021 * 14 13 11 16 16 N 1.47019 * 109.88424 * 183.27345 * 11 10 9 17 17 C 1.34770 * 125.65371 * 61.61322 * 16 11 10 18 18 O 1.21283 * 119.99469 * 5.08877 * 17 16 11 19 19 C 1.50701 * 120.00314 * 185.08990 * 17 16 11 20 20 C 1.53007 * 109.46765 * 180.02562 * 19 17 16 21 21 O 1.42888 * 112.85188 * 55.33205 * 20 19 17 22 22 C 1.53777 * 113.61072 * 284.12875 * 20 19 17 23 23 C 1.53954 * 87.02079 * 220.05021 * 22 20 19 24 24 C 1.53779 * 87.10999 * 25.36838 * 23 22 20 25 25 H 0.97009 * 119.99568 * 179.97438 * 1 2 3 26 26 H 0.96994 * 119.99819 * 359.97438 * 9 7 2 27 27 H 1.09008 * 109.46505 * 295.01652 * 10 9 7 28 28 H 1.08996 * 109.47006 * 55.01159 * 10 9 7 29 29 H 1.08996 * 110.71871 * 259.97808 * 13 11 10 30 30 H 1.08997 * 110.71404 * 23.06863 * 13 11 10 31 31 H 1.08999 * 111.00508 * 82.57387 * 14 13 11 32 32 H 1.08996 * 111.00577 * 206.38791 * 14 13 11 33 33 H 1.09004 * 110.36586 * 155.84560 * 15 14 13 34 34 H 1.08998 * 110.36642 * 278.05642 * 15 14 13 35 35 H 1.08998 * 109.47063 * 299.99622 * 19 17 16 36 36 H 1.08997 * 109.47392 * 60.00115 * 19 17 16 37 37 H 0.96701 * 114.00717 * 309.66684 * 21 20 19 38 38 H 1.08998 * 113.62062 * 334.57937 * 22 20 19 39 39 H 1.09008 * 113.60977 * 105.47599 * 22 20 19 40 40 H 1.08996 * 113.54264 * 270.81381 * 23 22 20 41 41 H 1.09005 * 113.73815 * 139.94773 * 23 22 20 42 42 H 1.08997 * 113.61577 * 220.08711 * 24 23 22 43 43 H 1.08998 * 113.69249 * 89.19266 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 1.4001 5 1 1.4475 2.6527 -0.7001 6 1 3.5477 1.4402 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0688 -4.8169 0.1258 12 1 0.4526 -4.6841 1.0151 13 6 0.1725 -4.8803 -1.1290 14 6 0.0237 -6.4053 -1.3731 15 6 1.4195 -6.9259 -0.9485 16 7 1.7990 -6.0905 0.2054 17 6 2.6713 -6.4367 1.1726 18 8 2.8403 -5.7067 2.1263 19 6 3.4367 -7.7307 1.0692 20 6 4.3504 -7.8816 2.2872 21 8 3.6434 -7.7918 3.5257 22 6 5.6059 -6.9957 2.2288 23 6 6.3787 -8.1910 2.8155 24 6 5.2941 -9.0929 2.2030 25 1 -0.4850 -0.8402 -0.0004 26 1 0.3557 -2.3880 0.0005 27 1 2.6162 -3.7540 -0.9308 28 1 2.7502 -3.6767 0.8424 29 1 -0.7980 -4.4245 -0.9331 30 1 0.6600 -4.3972 -1.9758 31 1 -0.7590 -6.8273 -0.7427 32 1 -0.1690 -6.6156 -2.4250 33 1 1.3603 -7.9740 -0.6549 34 1 2.1346 -6.8004 -1.7615 35 1 2.7364 -8.5653 1.0352 36 1 4.0394 -7.7248 0.1610 37 1 3.0658 -7.0192 3.5938 38 1 5.9095 -6.7346 1.2150 39 1 5.5631 -6.1333 2.8942 40 1 6.3950 -8.2063 3.9052 41 1 7.3655 -8.3343 2.3753 42 1 4.9999 -9.9213 2.8474 43 1 5.5111 -9.4072 1.1821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499893380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:15 Heat of formation + Delta-G solvation = -52.359442 kcal Electronic energy + Delta-G solvation = -23090.954868 eV Core-core repulsion = 19751.017183 eV Total energy + Delta-G solvation = -3339.937685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64578 -39.27113 -37.30517 -34.82323 -34.47442 -32.17489 -31.40032 -30.07368 -28.46240 -25.85495 -24.98716 -23.97583 -22.78626 -22.23364 -20.74831 -19.70619 -18.96313 -17.42826 -16.99387 -16.60098 -16.32299 -15.63669 -15.25896 -14.93841 -14.65637 -14.27445 -13.73128 -13.62499 -13.45034 -13.19125 -13.02234 -12.92960 -12.58050 -12.48024 -12.18965 -11.74796 -11.63311 -11.33689 -11.27695 -10.96431 -10.79850 -10.67450 -10.55908 -10.54284 -10.44546 -9.99959 -9.72646 -9.66281 -9.19933 -8.84682 -8.57044 -6.97965 -6.08193 -3.07368 2.59631 2.92339 3.54233 3.59493 3.72988 3.98886 4.23190 4.43397 4.48390 4.53214 4.66560 4.71268 4.74858 4.84724 5.01629 5.13978 5.25626 5.26595 5.33198 5.45607 5.47952 5.51061 5.61787 5.62256 5.69824 5.76199 5.81204 5.85148 5.94683 6.02083 6.03171 6.12400 6.24160 6.27853 6.39531 6.71619 6.85960 7.49997 7.75142 7.84858 8.19627 8.78096 9.24908 10.11050 10.25791 11.40600 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.004357 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.696104 B = 6424.393866 C = 7587.788594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.045 4.045 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.288 1.288 6 H -0.295 1.295 7 C -0.328 4.328 8 H 0.064 0.936 9 N -0.739 5.739 10 C 0.154 3.846 11 C 0.128 3.872 12 H 0.076 0.924 13 C -0.123 4.123 14 C -0.133 4.133 15 C 0.099 3.901 16 N -0.610 5.610 17 C 0.528 3.472 18 O -0.533 6.533 19 C -0.158 4.158 20 C 0.129 3.871 21 O -0.550 6.550 22 C -0.161 4.161 23 C -0.135 4.135 24 C -0.127 4.127 25 H 0.254 0.746 26 H 0.366 0.634 27 H 0.014 0.986 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.391 0.609 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.927 -21.467 -2.014 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.242 4.242 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.214 1.214 6 H -0.222 1.222 7 C -0.459 4.459 8 H 0.082 0.918 9 N -0.385 5.385 10 C 0.025 3.975 11 C 0.025 3.975 12 H 0.094 0.906 13 C -0.161 4.161 14 C -0.171 4.171 15 C -0.024 4.024 16 N -0.344 5.344 17 C 0.317 3.683 18 O -0.411 6.411 19 C -0.198 4.198 20 C 0.087 3.913 21 O -0.361 6.361 22 C -0.199 4.199 23 C -0.172 4.172 24 C -0.164 4.164 25 H 0.065 0.935 26 H 0.199 0.801 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.245 0.755 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.476 -19.969 -1.323 21.034 hybrid contribution -0.430 -1.164 -0.274 1.271 sum 6.046 -21.133 -1.596 22.038 Atomic orbital electron populations 1.70858 1.06001 1.28290 1.53967 1.25768 0.97061 1.00917 1.00494 0.83190 0.73837 0.75253 0.76305 1.22271 1.21362 1.22187 1.20048 0.92035 0.85666 1.48109 0.91837 1.42212 1.04750 1.00700 1.90873 1.20851 0.93498 0.84700 0.98406 1.21851 0.93521 0.83534 0.98635 0.90597 1.22685 1.00356 0.95335 0.97768 1.22786 0.95947 0.96402 1.02002 1.22344 0.96707 0.94760 0.88612 1.48563 1.43190 1.17927 1.24715 1.20286 0.78917 0.87499 0.81551 1.90627 1.65291 1.53699 1.31482 1.22342 1.00000 0.96170 1.01273 1.21797 0.89348 0.97011 0.83191 1.86300 1.62779 1.52043 1.35014 1.23597 0.96281 0.98165 1.01871 1.22771 0.97291 0.96207 1.00944 1.23045 0.95231 0.96499 1.01675 0.93493 0.80069 0.96784 0.94544 0.89943 0.89883 0.90711 0.89821 0.90759 0.91203 0.88427 0.87919 0.75451 0.89859 0.90336 0.89867 0.91458 0.90593 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.69 13.70 55.49 0.76 -28.93 16 2 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 3 Si 1.08 26.72 29.92 -169.99 -5.09 21.63 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.33 -9.65 9.99 -15.06 -0.15 -9.80 16 8 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.74 -19.38 5.44 -59.91 -0.33 -19.70 16 10 C 0.15 3.37 5.63 -4.04 -0.02 3.35 16 11 C 0.13 2.18 2.94 -66.96 -0.20 1.98 16 12 H 0.08 1.44 8.14 -51.92 -0.42 1.01 16 13 C -0.12 -1.74 6.01 -24.90 -0.15 -1.89 16 14 C -0.13 -1.32 7.08 -24.59 -0.17 -1.49 16 15 C 0.10 0.97 6.65 -2.53 -0.02 0.96 16 16 N -0.61 -8.54 3.06 -163.01 -0.50 -9.04 16 17 C 0.53 7.73 7.32 -10.99 -0.08 7.65 16 18 O -0.53 -9.81 12.81 -13.59 -0.17 -9.99 16 19 C -0.16 -1.66 4.42 -27.88 -0.12 -1.78 16 20 C 0.13 1.51 1.09 -89.80 -0.10 1.42 16 21 O -0.55 -7.85 13.40 -54.38 -0.73 -8.58 16 22 C -0.16 -1.93 7.07 -25.83 -0.18 -2.12 16 23 C -0.13 -1.34 8.02 -25.83 -0.21 -1.55 16 24 C -0.13 -1.17 7.48 -25.92 -0.19 -1.37 16 25 H 0.25 7.81 6.78 -40.82 -0.28 7.54 16 26 H 0.37 9.58 6.22 -40.82 -0.25 9.32 16 27 H 0.01 0.32 8.07 -51.92 -0.42 -0.10 16 28 H 0.04 0.90 6.93 -51.93 -0.36 0.54 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.27 7.79 -51.93 -0.40 0.87 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.55 7.51 -51.93 -0.39 0.16 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.85 7.77 -51.93 -0.40 0.45 16 36 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.39 5.88 6.33 45.56 0.29 6.17 16 38 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 39 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -34.70 341.60 -9.09 -43.79 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.49 Total: 11.75 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.69 Total: -6.09 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.07 Total: -57.67 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.90 Total: -18.57 kcal Atomic # 14 Polarization: 26.72 SS G_CDS: -5.09 Total: 21.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.70 -9.09 -43.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499893380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.570 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds