Wall clock time and date at job start Tue Mar 31 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99616 * 2 1 4 4 H 1.48496 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47452 * 300.00442 * 3 2 1 6 6 H 1.48506 * 109.46636 * 60.00622 * 3 2 1 7 7 C 1.38809 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99592 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00058 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47182 * 184.93369 * 10 9 7 12 12 H 1.09001 * 109.99741 * 54.23424 * 11 10 9 13 13 C 1.54324 * 109.88177 * 293.13749 * 11 10 9 14 14 C 1.55274 * 103.00802 * 218.46688 * 13 11 10 15 15 C 1.54906 * 101.52605 * 35.36395 * 14 13 11 16 16 N 1.47024 * 109.88221 * 175.33247 * 11 10 9 17 17 C 1.34776 * 125.64773 * 298.33263 * 16 11 10 18 18 O 1.21286 * 119.99725 * 354.94680 * 17 16 11 19 19 C 1.50700 * 119.99882 * 174.94525 * 17 16 11 20 20 C 1.52999 * 109.47094 * 180.02562 * 19 17 16 21 21 O 1.42909 * 112.84718 * 53.80333 * 20 19 17 22 22 C 1.53782 * 113.61506 * 282.50004 * 20 19 17 23 23 C 1.53784 * 87.07920 * 220.01799 * 22 20 19 24 24 C 1.53778 * 113.61603 * 184.99941 * 20 19 17 25 25 H 0.97004 * 120.00919 * 359.97438 * 1 2 3 26 26 H 0.97006 * 120.00334 * 0.02562 * 9 7 2 27 27 H 1.08993 * 109.47423 * 64.93416 * 10 9 7 28 28 H 1.09004 * 109.46957 * 304.93100 * 10 9 7 29 29 H 1.08999 * 110.72241 * 336.75466 * 13 11 10 30 30 H 1.09009 * 110.71748 * 100.02636 * 13 11 10 31 31 H 1.08994 * 110.96005 * 277.33146 * 14 13 11 32 32 H 1.09002 * 111.09715 * 153.45013 * 14 13 11 33 33 H 1.08999 * 110.36490 * 204.23069 * 15 14 13 34 34 H 1.09003 * 110.36790 * 82.02362 * 15 14 13 35 35 H 1.09000 * 109.47165 * 300.00254 * 19 17 16 36 36 H 1.08997 * 109.47325 * 60.00535 * 19 17 16 37 37 H 0.96702 * 114.00121 * 309.66544 * 21 20 19 38 38 H 1.08999 * 113.61327 * 334.56346 * 22 20 19 39 39 H 1.09000 * 113.61655 * 105.47184 * 22 20 19 40 40 H 1.09005 * 113.61039 * 270.87981 * 23 22 20 41 41 H 1.08995 * 113.69328 * 139.99228 * 23 22 20 42 42 H 1.09002 * 113.61431 * 254.53318 * 24 20 19 43 43 H 1.09001 * 113.61279 * 25.34744 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 0.0006 5 1 1.8912 2.3966 -1.2124 6 1 1.8913 2.3964 1.2127 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0686 -4.8170 -0.1246 12 1 0.4350 -4.6745 -1.0000 13 6 0.1969 -4.9015 1.1461 14 6 0.0561 -6.4312 1.3722 15 6 1.4439 -6.9414 0.9102 16 7 1.7996 -6.0876 -0.2377 17 6 2.6531 -6.4174 -1.2273 18 8 2.8020 -5.6726 -2.1729 19 6 3.4223 -7.7115 -1.1588 20 6 4.3128 -7.8416 -2.3962 21 8 5.1619 -6.7086 -2.5903 22 6 3.5500 -8.2662 -3.6622 23 6 4.7564 -9.1605 -3.9938 24 6 5.0515 -9.1874 -2.4848 25 1 -0.4852 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6169 -3.7537 0.9303 28 1 2.7495 -3.6771 -0.8431 29 1 0.7010 -4.4332 1.9915 30 1 -0.7781 -4.4448 0.9759 31 1 -0.7388 -6.8455 0.7522 32 1 -0.1130 -6.6583 2.4248 33 1 1.3809 -7.9850 0.6017 34 1 2.1758 -6.8265 1.7097 35 1 4.0428 -7.7183 -0.2627 36 1 2.7241 -8.5478 -1.1238 37 1 4.6990 -5.8601 -2.5589 38 1 2.6368 -8.8241 -3.4552 39 1 3.3994 -7.4547 -4.3741 40 1 5.5250 -8.6569 -4.5802 41 1 4.4816 -10.1329 -4.4024 42 1 6.1129 -9.1194 -2.2462 43 1 4.5494 -9.9967 -1.9547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499893381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:18 Heat of formation + Delta-G solvation = -52.152649 kcal Electronic energy + Delta-G solvation = -23032.724209 eV Core-core repulsion = 19692.795491 eV Total energy + Delta-G solvation = -3339.928718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60088 -39.22007 -37.24575 -34.54464 -34.39009 -32.08000 -31.34140 -30.06067 -28.59464 -25.85309 -25.12901 -24.04227 -22.73198 -22.06325 -20.63103 -19.67156 -18.93472 -17.33719 -16.83833 -16.48723 -16.31765 -15.48214 -15.28621 -14.73226 -14.54913 -14.42150 -13.75773 -13.43029 -13.38401 -13.02237 -12.94240 -12.73281 -12.58773 -12.37382 -12.14926 -11.68670 -11.54920 -11.29950 -11.20031 -10.96499 -10.91630 -10.83713 -10.59373 -10.50713 -10.40560 -10.00228 -9.76012 -9.68410 -9.56095 -8.84330 -8.51606 -6.89426 -5.73836 -3.02161 2.64584 2.98694 3.46331 3.52344 3.54683 4.04008 4.28074 4.44934 4.54576 4.56567 4.64878 4.68808 4.78494 4.90925 5.06976 5.13770 5.32820 5.34442 5.38687 5.47829 5.52950 5.54615 5.60770 5.61099 5.76526 5.77074 5.89210 6.00366 6.01382 6.03643 6.13466 6.15180 6.24720 6.39072 6.50169 6.80927 6.93651 7.56260 7.74557 7.84618 8.26060 8.45017 9.56259 10.12167 10.47785 11.49272 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.004216 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.454382 B = 6639.139200 C = 7739.802062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.148 3.852 11 C 0.128 3.872 12 H 0.077 0.923 13 C -0.122 4.122 14 C -0.134 4.134 15 C 0.099 3.901 16 N -0.610 5.610 17 C 0.529 3.471 18 O -0.533 6.533 19 C -0.158 4.158 20 C 0.129 3.871 21 O -0.550 6.550 22 C -0.162 4.162 23 C -0.135 4.135 24 C -0.128 4.128 25 H 0.254 0.746 26 H 0.383 0.617 27 H 0.015 0.985 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.393 0.607 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.473 -22.669 0.498 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.020 3.980 11 C 0.026 3.974 12 H 0.095 0.905 13 C -0.160 4.160 14 C -0.172 4.172 15 C -0.024 4.024 16 N -0.344 5.344 17 C 0.318 3.682 18 O -0.412 6.412 19 C -0.198 4.198 20 C 0.087 3.913 21 O -0.363 6.363 22 C -0.200 4.200 23 C -0.172 4.172 24 C -0.165 4.165 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.249 0.751 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.196 -22.607 -0.120 22.993 hybrid contribution -0.404 1.373 0.192 1.444 sum 3.792 -21.234 0.072 21.570 Atomic orbital electron populations 1.69662 1.05083 1.25498 1.58121 1.24718 0.95540 0.97632 1.03101 0.86105 0.78848 0.84063 0.77149 1.20542 1.21835 1.21894 1.19264 0.91075 0.83994 1.42248 0.91184 1.42204 1.05748 0.99709 1.89587 1.20920 0.93605 0.85211 0.98312 1.21859 0.93589 0.83436 0.98556 0.90460 1.22707 1.00729 0.94991 0.97586 1.22818 0.95936 0.96673 1.01804 1.22338 0.97003 0.94371 0.88712 1.48578 1.44335 1.17670 1.23776 1.20264 0.78897 0.87839 0.81213 1.90602 1.65136 1.53130 1.32300 1.22342 0.99410 0.96425 1.01654 1.21769 0.90145 0.87718 0.91672 1.86311 1.37846 1.17352 1.94753 1.23571 0.97324 1.00151 0.98912 1.22737 0.98656 0.99726 0.96088 1.23051 1.01472 0.94809 0.97208 0.93606 0.78323 0.96770 0.94687 0.89887 0.89720 0.90802 0.89883 0.90920 0.91193 0.88226 0.88180 0.75093 0.90008 0.90457 0.89825 0.91550 0.90540 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.23 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.73 -19.01 5.45 -59.91 -0.33 -19.33 16 10 C 0.15 3.20 5.65 -4.04 -0.02 3.17 16 11 C 0.13 2.19 2.93 -66.95 -0.20 2.00 16 12 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 13 C -0.12 -1.72 6.08 -24.83 -0.15 -1.88 16 14 C -0.13 -1.32 7.10 -24.52 -0.17 -1.50 16 15 C 0.10 0.97 6.64 -2.53 -0.02 0.95 16 16 N -0.61 -8.51 3.07 -163.02 -0.50 -9.01 16 17 C 0.53 7.72 7.33 -10.99 -0.08 7.64 16 18 O -0.53 -9.79 12.77 -14.26 -0.18 -9.97 16 19 C -0.16 -1.66 4.43 -27.88 -0.12 -1.79 16 20 C 0.13 1.52 1.10 -89.81 -0.10 1.43 16 21 O -0.55 -8.28 13.39 -55.04 -0.74 -9.02 16 22 C -0.16 -1.81 7.17 -25.92 -0.19 -2.00 16 23 C -0.13 -1.29 8.02 -25.92 -0.21 -1.50 16 24 C -0.13 -1.18 7.47 -25.92 -0.19 -1.38 16 25 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.38 10.28 7.44 -40.82 -0.30 9.98 16 27 H 0.01 0.31 8.03 -51.93 -0.42 -0.10 16 28 H 0.04 0.84 6.90 -51.93 -0.36 0.48 16 29 H 0.08 1.26 7.77 -51.93 -0.40 0.86 16 30 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.53 7.51 -51.93 -0.39 0.14 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 0.78 7.67 -51.93 -0.40 0.38 16 37 H 0.39 6.37 6.20 45.56 0.28 6.65 16 38 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -33.46 343.25 -9.17 -42.63 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.60 Total: 11.76 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.70 Total: -2.32 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.10 Total: -56.22 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.92 Total: -18.99 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.46 -9.17 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499893381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.525 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds