Wall clock time and date at job start Tue Mar 31 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47267 * 2 1 4 4 N 1.40525 * 127.42151 * 264.97545 * 3 2 1 5 5 H 0.97001 * 126.16158 * 359.97438 * 4 3 2 6 6 N 1.28700 * 107.66895 * 180.26287 * 4 3 2 7 7 N 1.28401 * 111.09179 * 359.55804 * 6 4 3 8 8 C 1.35146 * 109.87270 * 0.45141 * 7 6 4 9 9 N 1.32513 * 126.89209 * 179.73605 * 8 7 6 10 10 C 1.34065 * 120.00316 * 0.02562 * 9 8 7 11 11 O 1.21798 * 120.00174 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00102 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00050 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47389 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47346 * 300.00459 * 14 13 12 16 16 C 1.53004 * 109.46995 * 59.99951 * 14 13 12 17 17 C 1.50695 * 109.47497 * 180.02562 * 14 13 12 18 18 H 1.08004 * 119.99966 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00237 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00224 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00104 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47047 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47515 * 120.00203 * 21 19 17 24 24 H 1.48502 * 109.47258 * 240.00215 * 21 19 17 25 25 H 1.09004 * 109.47011 * 300.00385 * 1 2 3 26 26 H 1.09002 * 109.47371 * 60.00264 * 1 2 3 27 27 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47188 * 239.99483 * 2 1 3 29 29 H 1.09002 * 109.47371 * 119.99736 * 2 1 3 30 30 H 0.97000 * 120.00310 * 359.97438 * 12 10 9 31 31 H 1.09006 * 109.47309 * 300.00242 * 13 12 10 32 32 H 1.09005 * 109.47020 * 59.99787 * 13 12 10 33 33 H 1.08998 * 109.47306 * 59.99352 * 15 14 13 34 34 H 1.08997 * 109.47224 * 179.97438 * 15 14 13 35 35 H 1.09005 * 109.46558 * 299.99847 * 15 14 13 36 36 H 1.09006 * 109.46809 * 60.00250 * 16 14 13 37 37 H 1.08997 * 109.47193 * 179.97438 * 16 14 13 38 38 H 1.08998 * 109.46979 * 300.00234 * 16 14 13 39 39 H 0.97003 * 120.00445 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3951 2.1537 -1.1117 5 1 2.3809 1.8679 -2.0386 6 7 2.7683 3.3065 -0.6780 7 7 2.6671 3.3742 0.6002 8 6 2.2067 2.2006 1.0874 9 7 1.9819 1.9003 2.3583 10 6 2.2145 2.8115 3.3138 11 8 2.6329 3.9153 3.0137 12 7 1.9855 2.5061 4.6063 13 6 2.2402 3.5017 5.6505 14 6 1.9004 2.9052 7.0178 15 6 0.4245 2.5026 7.0461 16 6 2.7704 1.6714 7.2664 17 6 2.1617 3.9295 8.0917 18 1 2.5327 4.9083 7.8257 19 6 1.9273 3.6172 9.4140 20 7 1.4760 2.4252 9.7382 21 14 2.2506 4.8871 10.7452 22 1 2.7517 6.1392 10.1236 23 1 0.9901 5.1678 11.4783 24 1 3.2678 4.3637 11.6921 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6520 1.6272 4.8453 31 1 3.2915 3.7889 5.6300 32 1 1.6200 4.3806 5.4736 33 1 0.2350 1.7619 6.2692 34 1 0.1826 2.0772 8.0200 35 1 -0.1953 3.3816 6.8689 36 1 3.8218 1.9583 7.2462 37 1 2.5286 1.2467 8.2406 38 1 2.5809 0.9307 6.4895 39 1 1.3114 2.2053 10.6685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001562801920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:18 Heat of formation + Delta-G solvation = 135.183658 kcal Electronic energy + Delta-G solvation = -22244.207961 eV Core-core repulsion = 18841.155162 eV Total energy + Delta-G solvation = -3403.052799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.155 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.27099 -39.07618 -36.45823 -36.14682 -34.46666 -32.90039 -32.15377 -30.89041 -30.27428 -25.70020 -25.55415 -25.27651 -24.81785 -23.97698 -22.45904 -20.25615 -19.07258 -18.56439 -17.48427 -17.02889 -16.60787 -15.75349 -15.11648 -14.84258 -14.55450 -14.54301 -13.94219 -13.47647 -13.31960 -12.80731 -12.79091 -12.63006 -12.00581 -11.96904 -11.67311 -11.54207 -11.17309 -11.11076 -11.09291 -10.73214 -10.55134 -10.46889 -10.21350 -10.05515 -9.45719 -9.16686 -8.83867 -8.61501 -8.37264 -8.27246 -7.82511 -5.90002 -3.99214 0.30996 0.49508 2.21063 2.99285 3.35578 3.43590 3.49354 3.86285 3.97285 4.29617 4.36260 4.48638 4.50252 4.67709 4.77290 4.96338 5.25426 5.36525 5.41922 5.68728 6.09948 6.42863 6.55217 6.57215 6.71430 7.00767 7.02759 7.15583 7.20637 7.35915 7.50488 7.59300 7.72016 7.82486 7.95813 8.16442 8.27704 8.52793 8.59135 9.01302 9.45361 9.65772 11.11422 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034896 B = 0.003447 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.193121 B = 8121.700099 C = 8655.663266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.145 3.855 3 N -0.424 5.424 4 N -0.317 5.317 5 H 0.474 0.526 6 N 0.100 4.900 7 N -0.269 5.269 8 C 0.557 3.443 9 N -0.611 5.611 10 C 0.663 3.337 11 O -0.588 6.588 12 N -0.702 5.702 13 C 0.147 3.853 14 C 0.055 3.945 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.501 4.501 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.399 0.601 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.008 0.992 34 H 0.084 0.916 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.084 0.916 38 H 0.008 0.992 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 -9.377 -23.785 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.025 3.975 3 N -0.240 5.240 4 N -0.168 5.168 5 H 0.331 0.669 6 N 0.103 4.897 7 N -0.163 5.163 8 C 0.192 3.808 9 N -0.374 5.374 10 C 0.360 3.640 11 O -0.464 6.464 12 N -0.355 5.355 13 C 0.024 3.976 14 C 0.054 3.946 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.540 4.540 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.234 0.766 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.102 0.898 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.103 0.897 38 H 0.027 0.973 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.200 -8.299 -23.457 24.910 hybrid contribution -0.167 -0.337 0.248 0.451 sum -1.368 -8.636 -23.209 24.801 Atomic orbital electron populations 1.22274 0.93803 1.03739 1.03694 1.21970 0.95611 0.74439 1.05483 1.48984 1.63972 1.12783 0.98303 1.48429 1.55957 1.07017 1.05399 0.66912 1.78075 1.02632 0.99377 1.09634 1.77408 1.22879 1.19184 0.96780 1.21336 0.88095 0.82456 0.88909 1.68703 1.37759 1.36921 0.94035 1.16792 0.79578 0.84092 0.83522 1.90993 1.48893 1.24064 1.82497 1.45215 1.67984 1.18376 1.03893 1.21604 0.99616 0.89874 0.86500 1.18367 0.92784 0.94101 0.89304 1.21805 0.97627 0.97947 1.01316 1.21807 0.98021 0.97304 1.01578 1.21058 1.43461 0.98777 0.90710 0.92372 1.24878 0.94972 0.95322 0.98430 1.69829 1.45722 1.19611 1.17407 0.86530 0.77742 0.81877 0.81817 1.19749 1.21153 1.21159 0.90505 0.92353 0.89711 0.88848 0.86439 0.76633 0.93025 0.93034 0.97309 0.89762 0.95569 0.95572 0.89747 0.97300 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.88 10.24 37.15 0.38 -0.50 16 2 C 0.15 0.73 7.26 -4.05 -0.03 0.70 16 3 N -0.42 -3.82 3.75 -61.90 -0.23 -4.05 16 4 N -0.32 -2.04 8.33 60.35 0.50 -1.54 16 5 H 0.47 0.36 8.96 -331.76 -2.97 -2.61 16 6 N 0.10 1.12 13.33 60.35 0.80 1.92 16 7 N -0.27 -4.46 10.46 30.06 0.31 -4.14 16 8 C 0.56 8.57 8.57 -320.65 -2.75 5.83 16 9 N -0.61 -11.08 10.54 -17.34 -0.18 -11.27 16 10 C 0.66 14.64 8.48 -87.56 -0.74 13.90 16 11 O -0.59 -14.83 14.93 5.10 0.08 -14.75 16 12 N -0.70 -15.19 4.96 -65.37 -0.32 -15.51 16 13 C 0.15 3.53 4.50 -4.04 -0.02 3.52 16 14 C 0.06 1.38 0.50 -155.66 -0.08 1.30 16 15 C -0.13 -3.14 8.08 37.16 0.30 -2.84 16 16 C -0.13 -3.14 8.08 37.16 0.30 -2.84 16 17 C -0.50 -13.86 8.01 -34.44 -0.28 -14.14 16 18 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 19 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 20 N -0.89 -24.55 9.35 55.43 0.52 -24.03 16 21 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.40 8.04 6.26 -40.82 -0.26 7.78 16 31 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 34 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 38 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -36.57 325.80 -9.56 -46.13 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.92 Total: -0.77 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -3.00 Total: 6.61 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 1.40 Total: -58.62 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.08 Total: -14.75 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.57 -9.56 -46.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562801920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.313 kcal (2) G-P(sol) polarization free energy of solvation -36.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds