Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 120.00009 * 2 1 4 4 H 1.48500 * 109.46894 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47567 * 300.00063 * 3 2 1 6 6 H 1.48495 * 109.46927 * 60.00432 * 3 2 1 7 7 C 1.37877 * 119.99610 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99663 * 172.76491 * 7 2 1 9 9 C 1.50697 * 120.00203 * 352.76138 * 7 2 1 10 10 C 1.53003 * 115.54915 * 296.53972 * 9 7 2 11 11 N 1.46501 * 109.47417 * 275.27857 * 10 9 7 12 12 C 1.34775 * 119.99843 * 185.00396 * 11 10 9 13 13 O 1.21580 * 120.00104 * 5.07858 * 12 11 10 14 14 N 1.34781 * 119.99539 * 185.08029 * 12 11 10 15 15 C 1.47597 * 118.64676 * 355.21283 * 14 12 11 16 16 C 1.53934 * 112.17884 * 137.86509 * 15 14 12 17 17 C 1.50883 * 110.06869 * 319.44731 * 16 15 14 18 18 C 1.52563 * 109.37781 * 91.86640 * 17 16 15 19 19 H 1.09000 * 108.51419 * 36.23015 * 18 17 16 20 20 O 1.42902 * 108.51084 * 153.87517 * 18 17 16 21 21 C 1.47093 * 114.32947 * 274.97362 * 18 17 16 22 22 C 1.44584 * 118.63990 * 175.19024 * 14 12 11 23 23 C 1.52998 * 117.52224 * 82.24683 * 9 7 2 24 24 C 1.52999 * 60.00157 * 107.48109 * 23 9 7 25 25 H 0.97003 * 119.99430 * 5.00135 * 1 2 3 26 26 H 1.08997 * 109.46946 * 155.28005 * 10 9 7 27 27 H 1.09003 * 109.47034 * 35.28011 * 10 9 7 28 28 H 0.97005 * 119.99870 * 5.01116 * 11 10 9 29 29 H 1.09005 * 108.94481 * 258.55732 * 15 14 12 30 30 H 1.09006 * 108.94658 * 17.26473 * 15 14 12 31 31 H 1.09001 * 109.40814 * 199.24513 * 16 15 14 32 32 H 1.09002 * 109.35659 * 79.61429 * 16 15 14 33 33 H 1.08997 * 109.49005 * 331.88982 * 17 16 15 34 34 H 1.09003 * 109.48925 * 211.84326 * 17 16 15 35 35 H 0.96702 * 113.99747 * 179.97438 * 20 18 17 36 36 H 1.08997 * 109.33032 * 183.06859 * 21 18 17 37 37 H 1.09001 * 109.32758 * 302.54665 * 21 18 17 38 38 H 1.08996 * 109.44861 * 150.68565 * 22 14 12 39 39 H 1.09003 * 109.42890 * 30.74823 * 22 14 12 40 40 H 1.08992 * 117.50038 * 214.97526 * 23 9 7 41 41 H 1.08998 * 117.49519 * 359.97438 * 23 9 7 42 42 H 1.09003 * 117.49363 * 252.51123 * 24 23 9 43 43 H 1.08999 * 117.51427 * 107.48393 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0781 -1.1978 -0.1183 9 6 1.2600 -2.4940 0.1633 10 6 0.5367 -2.6764 1.4992 11 7 1.4751 -3.1995 2.4952 12 6 1.0354 -3.5354 3.7242 13 8 -0.1529 -3.4921 3.9776 14 7 1.9131 -3.9193 4.6722 15 6 3.3348 -4.0644 4.3032 16 6 4.2757 -3.4921 5.3787 17 6 3.7163 -2.2004 5.9218 18 6 2.8543 -2.4968 7.1452 19 1 3.3106 -3.3169 7.6997 20 8 2.8400 -1.3383 7.9816 21 6 1.4638 -2.8610 6.8330 22 6 1.4232 -4.1715 6.0089 23 6 0.6061 -3.0961 -1.0820 24 6 1.8615 -3.7399 -0.4901 25 1 -0.4849 0.8369 -0.0732 26 1 -0.2878 -3.3780 1.3731 27 1 0.1478 -1.7154 1.8360 28 1 2.4129 -3.3041 2.2702 29 1 3.5582 -5.1223 4.1644 30 1 3.5122 -3.5395 3.3644 31 1 5.2560 -3.3054 4.9402 32 1 4.3764 -4.2122 6.1909 33 1 3.1082 -1.7174 5.1570 34 1 4.5357 -1.5400 6.2057 35 1 2.3123 -1.4401 8.7856 36 1 0.9104 -3.0013 7.7615 37 1 1.0012 -2.0588 6.2580 38 1 2.0504 -4.9222 6.4897 39 1 0.3971 -4.5355 5.9563 40 1 -0.3394 -3.6219 -0.9496 41 1 0.7140 -2.5517 -2.0201 42 1 2.7955 -3.6192 -1.0389 43 1 1.7422 -4.6893 0.0319 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001564678498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = -52.833332 kcal Electronic energy + Delta-G solvation = -23517.578533 eV Core-core repulsion = 20177.620299 eV Total energy + Delta-G solvation = -3339.958235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31701 -38.35524 -36.80599 -35.77997 -33.52912 -32.78231 -32.06026 -31.60931 -27.04441 -26.07367 -25.34263 -24.33761 -21.95615 -21.18997 -20.61132 -19.35572 -18.94834 -18.06143 -17.27881 -16.16117 -15.95880 -15.50621 -14.97493 -14.67205 -14.62275 -14.09300 -13.95039 -13.68171 -13.44451 -13.22355 -12.64023 -12.55488 -12.17173 -11.76309 -11.57357 -11.50493 -11.40353 -11.28914 -11.03537 -10.97249 -10.87421 -10.56825 -10.50892 -10.30083 -9.96460 -9.68327 -9.42505 -9.03030 -8.61337 -8.52123 -8.21431 -7.93143 -6.07880 -4.14539 3.07537 3.26200 3.35711 3.37091 3.73996 4.10032 4.35323 4.39423 4.56647 4.77219 4.90717 5.00276 5.11936 5.14764 5.22312 5.37378 5.40489 5.52589 5.56314 5.67829 5.82041 5.88830 5.94897 6.01736 6.07015 6.22440 6.31483 6.32513 6.48411 6.62175 6.69608 6.78348 6.95718 7.04860 7.32292 7.32609 7.50750 7.55993 7.56640 7.85273 8.35028 8.56848 8.85233 9.18683 9.50405 10.99833 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.005513 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.807843 B = 5078.104453 C = 5833.049361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.072 3.928 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.498 4.498 8 H 0.061 0.939 9 C 0.035 3.965 10 C 0.179 3.821 11 N -0.726 5.726 12 C 0.696 3.304 13 O -0.597 6.597 14 N -0.630 5.630 15 C 0.108 3.892 16 C -0.127 4.127 17 C -0.113 4.113 18 C 0.115 3.885 19 H 0.043 0.957 20 O -0.574 6.574 21 C -0.174 4.174 22 C 0.142 3.858 23 C -0.166 4.166 24 C -0.208 4.208 25 H 0.262 0.738 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.393 0.607 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.373 0.627 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.562 -8.447 12.511 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.132 4.132 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.536 4.536 8 H 0.079 0.921 9 C 0.034 3.966 10 C 0.056 3.944 11 N -0.381 5.381 12 C 0.398 3.602 13 O -0.476 6.476 14 N -0.368 5.368 15 C -0.015 4.015 16 C -0.165 4.165 17 C -0.150 4.150 18 C 0.057 3.943 19 H 0.061 0.939 20 O -0.380 6.380 21 C -0.213 4.213 22 C 0.017 3.983 23 C -0.205 4.205 24 C -0.246 4.246 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.229 0.771 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.220 0.780 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.905 -8.035 12.255 16.199 hybrid contribution 0.466 0.683 0.235 0.859 sum 7.371 -7.352 12.490 16.260 Atomic orbital electron populations 1.69972 1.05897 1.26926 1.48195 1.24985 0.94803 0.98992 0.94383 0.86577 0.80173 0.83833 0.77693 1.19704 1.21005 1.20870 1.20457 0.93057 0.88699 1.51362 0.92102 1.19100 0.97407 0.91295 0.88797 1.20893 0.89101 0.97890 0.86520 1.45565 1.12942 1.68071 1.11565 1.16072 0.84901 0.78241 0.81027 1.90865 1.14575 1.61091 1.81112 1.46890 1.06859 1.73573 1.09524 1.21906 0.80488 1.00619 0.98485 1.21667 0.98969 0.97012 0.98838 1.21015 0.99635 0.97823 0.96545 1.20770 0.95124 0.86971 0.91467 0.93876 1.86593 1.74705 1.39716 1.36956 1.22036 0.97441 1.00529 1.01283 1.21021 1.00956 0.95116 0.81183 1.22723 0.93800 1.03806 1.00151 1.22872 0.97536 0.97129 1.07030 0.92791 0.94345 0.90248 0.77089 0.91900 0.89951 0.89974 0.91514 0.90481 0.90796 0.78038 0.90995 0.90282 0.91226 0.89454 0.91620 0.90019 0.90438 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.55 12.42 55.43 0.69 -23.86 16 2 C 0.07 1.94 5.22 -17.82 -0.09 1.85 16 3 Si 0.89 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.50 -12.95 8.84 -34.44 -0.30 -13.26 16 8 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 9 C 0.03 0.83 1.35 -155.66 -0.21 0.62 16 10 C 0.18 4.23 5.51 -4.04 -0.02 4.21 16 11 N -0.73 -14.43 5.33 -65.22 -0.35 -14.78 16 12 C 0.70 13.58 8.21 -86.92 -0.71 12.87 16 13 O -0.60 -13.93 15.73 5.30 0.08 -13.85 16 14 N -0.63 -9.18 2.24 -178.27 -0.40 -9.58 16 15 C 0.11 1.23 6.06 -2.95 -0.02 1.22 16 16 C -0.13 -1.21 5.71 -27.31 -0.16 -1.37 16 17 C -0.11 -1.37 5.15 -28.02 -0.14 -1.52 16 18 C 0.11 1.30 2.89 -29.79 -0.09 1.21 16 19 H 0.04 0.41 7.36 -51.93 -0.38 0.03 16 20 O -0.57 -6.88 13.19 -35.23 -0.46 -7.35 16 21 C -0.17 -2.11 5.20 -28.58 -0.15 -2.25 16 22 C 0.14 1.78 5.42 -4.08 -0.02 1.75 16 23 C -0.17 -3.76 9.88 -26.73 -0.26 -4.03 16 24 C -0.21 -4.25 9.77 -26.73 -0.26 -4.51 16 25 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 26 H 0.04 0.93 7.86 -51.93 -0.41 0.52 16 27 H 0.08 2.17 7.08 -51.93 -0.37 1.81 16 28 H 0.39 6.97 5.75 -40.82 -0.23 6.73 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.01 5.53 -51.93 -0.29 0.72 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.54 7.32 -51.93 -0.38 0.16 16 33 H 0.08 1.18 7.48 -51.93 -0.39 0.79 16 34 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 35 H 0.37 2.85 8.95 45.56 0.41 3.26 16 36 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 39 H 0.09 1.24 7.23 -51.93 -0.38 0.86 16 40 H 0.07 1.43 8.05 -51.93 -0.42 1.01 16 41 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -31.64 340.85 -8.95 -40.58 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.18 Total: 11.10 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.44 Total: -3.21 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.06 Total: -48.22 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.38 Total: -21.20 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.64 -8.95 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001564678498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.250 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds