Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99986 * 2 1 4 4 H 1.48502 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47368 * 300.00023 * 3 2 1 6 6 H 1.48496 * 109.47421 * 60.00461 * 3 2 1 7 7 C 1.37880 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00011 * 191.54761 * 7 2 1 9 9 C 1.50696 * 119.99745 * 11.54316 * 7 2 1 10 10 C 1.52996 * 115.55048 * 40.07535 * 9 7 2 11 11 N 1.46495 * 109.47636 * 56.16727 * 10 9 7 12 12 C 1.34772 * 120.00302 * 184.92764 * 11 10 9 13 13 O 1.21592 * 120.00025 * 5.24363 * 12 11 10 14 14 N 1.34776 * 119.99896 * 185.23513 * 12 11 10 15 15 C 1.47601 * 118.64675 * 4.45729 * 14 12 11 16 16 C 1.53599 * 112.34239 * 222.03550 * 15 14 12 17 17 C 1.50880 * 109.95371 * 40.83332 * 16 15 14 18 18 C 1.52568 * 109.35973 * 268.02620 * 17 16 15 19 19 H 1.09003 * 108.50940 * 323.75517 * 18 17 16 20 20 O 1.42900 * 108.51145 * 206.26641 * 18 17 16 21 21 C 1.47091 * 114.32878 * 85.00954 * 18 17 16 22 22 C 1.44581 * 118.64231 * 184.72190 * 14 12 11 23 23 C 1.53005 * 117.50046 * 254.35931 * 9 7 2 24 24 C 1.53005 * 60.00024 * 252.51385 * 23 9 7 25 25 H 0.97003 * 119.99578 * 354.98631 * 1 2 3 26 26 H 1.08998 * 109.46882 * 176.16934 * 10 9 7 27 27 H 1.09001 * 109.47017 * 296.16219 * 10 9 7 28 28 H 0.97002 * 119.99398 * 4.92614 * 11 10 9 29 29 H 1.08998 * 108.94595 * 342.84152 * 15 14 12 30 30 H 1.09000 * 108.94575 * 101.46275 * 15 14 12 31 31 H 1.09002 * 109.50817 * 280.63902 * 16 15 14 32 32 H 1.08995 * 109.26287 * 160.87112 * 16 15 14 33 33 H 1.09000 * 109.49312 * 148.05460 * 17 16 15 34 34 H 1.09005 * 109.48875 * 27.99038 * 17 16 15 35 35 H 0.96706 * 113.99742 * 175.23010 * 20 18 17 36 36 H 1.09003 * 109.33147 * 176.93684 * 21 18 17 37 37 H 1.09001 * 109.18631 * 57.37336 * 21 18 17 38 38 H 1.08999 * 109.45263 * 209.29491 * 22 14 12 39 39 H 1.09001 * 109.45462 * 329.21581 * 22 14 12 40 40 H 1.08996 * 117.49630 * 0.02562 * 23 9 7 41 41 H 1.09003 * 117.49641 * 145.02170 * 23 9 7 42 42 H 1.08995 * 117.49738 * 252.50767 * 24 23 9 43 43 H 1.09001 * 117.49390 * 107.49114 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0681 -1.2036 0.1867 9 6 1.2738 -2.4858 -0.2623 10 6 0.2024 -2.4286 -1.3530 11 7 0.8015 -1.9508 -2.6015 12 6 0.0239 -1.7246 -3.6788 13 8 -1.1845 -1.8247 -3.5881 14 7 0.5856 -1.3871 -4.8565 15 6 2.0580 -1.3709 -4.9593 16 6 2.5751 -0.1564 -5.7447 17 6 1.7893 1.0745 -5.3656 18 6 0.6106 1.2361 -6.3206 19 1 0.9251 0.9198 -7.3152 20 8 0.2606 2.6203 -6.3794 21 6 -0.5853 0.4676 -5.9426 22 6 -0.2788 -1.0502 -5.9654 23 6 1.0184 -3.4075 0.9320 24 6 2.0654 -3.7871 -0.1172 25 1 -0.4850 0.8369 0.0734 26 1 -0.2128 -3.4245 -1.5069 27 1 -0.5916 -1.7473 -1.0469 28 1 1.7579 -1.7974 -2.6529 29 1 2.4826 -1.3502 -3.9557 30 1 2.3876 -2.2799 -5.4625 31 1 2.4653 -0.3405 -6.8135 32 1 3.6281 0.0009 -5.5113 33 1 2.4333 1.9515 -5.4310 34 1 1.4193 0.9699 -4.3456 35 1 -0.4342 2.8235 -7.0206 36 1 -1.3901 0.6838 -6.6453 37 1 -0.8953 0.7581 -4.9388 38 1 0.2160 -1.3066 -6.9022 39 1 -1.2104 -1.6100 -5.8825 40 1 1.3785 -3.0794 1.9070 41 1 0.0867 -3.9732 0.9409 42 1 1.8225 -4.6025 -0.7985 43 1 3.1146 -3.7088 0.1676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001564678499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = -49.475441 kcal Electronic energy + Delta-G solvation = -23968.374617 eV Core-core repulsion = 20628.561992 eV Total energy + Delta-G solvation = -3339.812626 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.15460 -38.20859 -36.75053 -35.65400 -33.37747 -32.65137 -32.16428 -31.48838 -26.89491 -25.88313 -25.35620 -24.26866 -21.77196 -21.17463 -20.50390 -19.28583 -18.78006 -17.94442 -17.24242 -16.10273 -15.91962 -15.29969 -14.87335 -14.73637 -14.46661 -13.95141 -13.85237 -13.62739 -13.32052 -12.92544 -12.63907 -12.44998 -12.11774 -11.64262 -11.59245 -11.44347 -11.28522 -11.16695 -11.03931 -10.87344 -10.72690 -10.50095 -10.46317 -10.25458 -9.87783 -9.62431 -9.24356 -9.09875 -8.76039 -8.38854 -8.17137 -7.69622 -6.05210 -4.13308 3.23278 3.25255 3.34266 3.35356 3.94382 4.19460 4.32982 4.55870 4.68603 4.88231 4.99635 5.05425 5.13071 5.23080 5.34398 5.48900 5.51482 5.63811 5.66023 5.78995 5.92937 6.00484 6.03370 6.07103 6.17545 6.32450 6.34847 6.44370 6.58040 6.62088 6.71788 6.89026 6.99431 7.12450 7.30342 7.47319 7.63708 7.65080 7.69864 7.96992 8.35488 8.76397 8.88658 9.41420 9.48499 10.94778 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.006784 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.945578 B = 4126.098620 C = 4943.794400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.080 3.920 3 Si 0.884 3.116 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.039 3.961 10 C 0.173 3.827 11 N -0.711 5.711 12 C 0.698 3.302 13 O -0.600 6.600 14 N -0.632 5.632 15 C 0.110 3.890 16 C -0.127 4.127 17 C -0.114 4.114 18 C 0.116 3.884 19 H 0.042 0.958 20 O -0.574 6.574 21 C -0.173 4.173 22 C 0.144 3.856 23 C -0.192 4.192 24 C -0.212 4.212 25 H 0.263 0.737 26 H 0.021 0.979 27 H 0.109 0.891 28 H 0.394 0.606 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.372 0.628 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -0.444 -13.786 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.126 4.126 3 Si 0.711 3.289 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.039 3.961 10 C 0.050 3.950 11 N -0.365 5.365 12 C 0.399 3.601 13 O -0.479 6.479 14 N -0.370 5.370 15 C -0.014 4.014 16 C -0.165 4.165 17 C -0.151 4.151 18 C 0.058 3.942 19 H 0.060 0.940 20 O -0.379 6.379 21 C -0.213 4.213 22 C 0.019 3.981 23 C -0.230 4.230 24 C -0.249 4.249 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.127 0.873 28 H 0.230 0.770 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.218 0.782 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.963 -0.387 -13.297 13.629 hybrid contribution 0.497 0.959 -0.290 1.118 sum 3.460 0.572 -13.587 14.032 Atomic orbital electron populations 1.69845 1.05924 1.26881 1.47118 1.24933 0.94662 0.98877 0.94105 0.86664 0.80234 0.84008 0.77954 1.19654 1.20654 1.20992 1.20442 0.94178 0.88974 1.50326 0.92092 1.19170 0.94809 0.89113 0.93055 1.20887 0.97096 0.96537 0.80485 1.45221 1.10583 1.69888 1.10789 1.16009 0.85451 0.78250 0.80404 1.90843 1.12645 1.60321 1.84115 1.46879 1.05418 1.73713 1.11012 1.21816 0.80294 0.97690 1.01589 1.21623 1.00212 0.94399 1.00270 1.21032 0.95851 0.97901 1.00363 1.20759 0.94570 0.81017 0.97881 0.93966 1.86604 1.60332 1.25886 1.65104 1.22023 0.97995 0.97258 1.03990 1.20989 0.95293 0.93659 0.88188 1.22873 0.98096 1.06538 0.95515 1.22936 0.96446 1.01340 1.04201 0.92683 0.96116 0.87340 0.76952 0.89906 0.92055 0.91532 0.90053 0.90930 0.90426 0.78165 0.91127 0.90238 0.91391 0.89525 0.90189 0.91575 0.91435 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.88 11.02 55.43 0.61 -23.27 16 2 C 0.08 2.09 5.24 -17.82 -0.09 1.99 16 3 Si 0.88 20.56 29.56 -169.99 -5.02 15.54 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.50 -12.86 8.46 -34.44 -0.29 -13.15 16 8 H 0.06 1.56 7.84 -52.49 -0.41 1.15 16 9 C 0.04 0.93 1.84 -155.66 -0.29 0.65 16 10 C 0.17 4.16 4.97 -4.05 -0.02 4.14 16 11 N -0.71 -15.23 5.24 -65.23 -0.34 -15.58 16 12 C 0.70 14.71 8.21 -86.92 -0.71 13.99 16 13 O -0.60 -14.84 15.73 5.29 0.08 -14.76 16 14 N -0.63 -10.21 2.25 -178.48 -0.40 -10.61 16 15 C 0.11 1.42 6.07 -3.13 -0.02 1.40 16 16 C -0.13 -1.40 5.71 -27.48 -0.16 -1.56 16 17 C -0.11 -1.60 5.16 -28.02 -0.14 -1.74 16 18 C 0.12 1.48 2.87 -29.79 -0.09 1.39 16 19 H 0.04 0.45 7.36 -51.93 -0.38 0.07 16 20 O -0.57 -7.67 13.16 -35.23 -0.46 -8.14 16 21 C -0.17 -2.37 5.23 -28.58 -0.15 -2.52 16 22 C 0.14 1.99 5.42 -4.08 -0.02 1.97 16 23 C -0.19 -4.26 9.96 -26.73 -0.27 -4.53 16 24 C -0.21 -4.39 9.93 -26.73 -0.27 -4.65 16 25 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 26 H 0.02 0.49 8.10 -51.93 -0.42 0.06 16 27 H 0.11 3.02 6.00 -51.93 -0.31 2.71 16 28 H 0.39 7.85 5.51 -40.82 -0.22 7.62 16 29 H 0.08 1.17 5.47 -51.93 -0.28 0.89 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.62 7.32 -51.93 -0.38 0.24 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.08 1.38 7.48 -51.93 -0.39 0.99 16 35 H 0.37 3.25 9.04 45.56 0.41 3.66 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 39 H 0.09 1.33 7.24 -51.93 -0.38 0.96 16 40 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -31.22 338.26 -9.07 -40.29 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -6.12 Total: 14.03 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -2.51 Total: -2.61 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.13 Total: -49.45 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.38 Total: -22.89 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.22 -9.07 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001564678499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.183 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds