Wall clock time and date at job start Tue Mar 31 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99693 * 2 1 4 4 H 1.48501 * 109.47110 * 272.93207 * 3 2 1 5 5 H 1.48496 * 109.47046 * 32.93144 * 3 2 1 6 6 H 1.48498 * 109.46966 * 152.93274 * 3 2 1 7 7 C 1.38809 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00219 * 339.36800 * 7 2 1 9 9 N 1.36939 * 119.99926 * 159.36557 * 7 2 1 10 10 C 1.46918 * 120.63522 * 332.60956 * 9 7 2 11 11 C 1.53189 * 108.78028 * 233.63073 * 10 9 7 12 12 C 1.53038 * 109.33601 * 305.37999 * 11 10 9 13 13 C 1.53043 * 109.54039 * 61.31761 * 12 11 10 14 14 H 1.08993 * 109.50135 * 58.65006 * 13 12 11 15 15 N 1.46498 * 109.49787 * 178.71839 * 13 12 11 16 16 C 1.34786 * 119.99985 * 204.66127 * 15 13 12 17 17 O 1.21286 * 119.99663 * 359.97438 * 16 15 13 18 18 C 1.50695 * 120.00048 * 179.97438 * 16 15 13 19 19 C 1.53004 * 109.47107 * 179.97438 * 18 16 15 20 20 O 1.42899 * 112.84589 * 53.79987 * 19 18 16 21 21 C 1.53778 * 113.61242 * 282.49794 * 19 18 16 22 22 C 1.53779 * 87.08129 * 220.01845 * 21 19 18 23 23 C 1.53771 * 113.61316 * 185.00134 * 19 18 16 24 24 C 1.46932 * 120.62719 * 152.63367 * 9 7 2 25 25 H 0.97003 * 120.00381 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.58768 * 353.41774 * 10 9 7 27 27 H 1.08995 * 109.58751 * 113.84191 * 10 9 7 28 28 H 1.09003 * 109.49596 * 65.30874 * 11 10 9 29 29 H 1.08992 * 109.50359 * 185.37981 * 11 10 9 30 30 H 1.09001 * 109.43652 * 301.30905 * 12 11 10 31 31 H 1.09009 * 109.48873 * 181.35128 * 12 11 10 32 32 H 0.97000 * 120.00304 * 24.92415 * 15 13 12 33 33 H 1.09002 * 109.46978 * 299.99618 * 18 16 15 34 34 H 1.09006 * 109.47334 * 59.99714 * 18 16 15 35 35 H 0.96698 * 114.00005 * 309.66551 * 20 19 18 36 36 H 1.09003 * 113.61286 * 334.56454 * 21 19 18 37 37 H 1.08999 * 113.61935 * 105.46606 * 21 19 18 38 38 H 1.09001 * 113.61508 * 270.88837 * 22 21 19 39 39 H 1.08993 * 113.69476 * 139.99128 * 22 21 19 40 40 H 1.09006 * 113.61057 * 254.52410 * 23 19 18 41 41 H 1.08995 * 113.62415 * 25.42813 * 23 19 18 42 42 H 1.09000 * 109.58967 * 6.57886 * 24 9 7 43 43 H 1.09003 * 109.58233 * 246.15825 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4355 2.0823 -1.3982 5 1 1.4798 2.6340 0.7611 6 1 3.5772 1.4232 0.6371 7 6 2.0102 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3286 9 7 3.3138 -1.2398 -0.4185 10 6 3.8176 -0.2582 -1.3886 11 6 4.4621 -1.0076 -2.5590 12 6 5.5284 -1.9650 -2.0221 13 6 4.8747 -2.9902 -1.0927 14 1 4.1080 -3.5396 -1.6388 15 7 5.8911 -3.9248 -0.6034 16 6 5.5328 -5.1604 -0.2013 17 8 4.3687 -5.4982 -0.2441 18 6 6.5785 -6.1220 0.3014 19 6 5.9115 -7.4427 0.6913 20 8 5.1187 -7.9957 -0.3612 21 6 5.1887 -7.3909 2.0476 22 6 5.7374 -8.8042 2.3052 23 6 6.8760 -8.4540 1.3327 24 6 4.2349 -2.2632 0.0944 25 1 -0.4851 0.8400 0.0004 26 1 2.9912 0.3506 -1.7552 27 1 4.5603 0.3802 -0.9102 28 1 3.6991 -1.5753 -3.0917 29 1 4.9242 -0.2920 -3.2389 30 1 6.2782 -1.3995 -1.4689 31 1 6.0053 -2.4821 -2.8548 32 1 6.8216 -3.6532 -0.5652 33 1 7.3128 -6.3032 -0.4835 34 1 7.0756 -5.6954 1.1727 35 1 4.4936 -7.3705 -0.7528 36 1 5.5876 -6.6372 2.7265 37 1 4.1026 -7.3529 1.9625 38 1 5.0841 -9.5987 1.9446 39 1 6.0722 -8.9639 3.3301 40 1 7.1522 -9.2745 0.6703 41 1 7.7363 -7.9911 1.8161 42 1 3.6838 -2.9774 0.7063 43 1 5.0117 -1.7883 0.6937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566622080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:44 Heat of formation + Delta-G solvation = -46.291037 kcal Electronic energy + Delta-G solvation = -23139.244828 eV Core-core repulsion = 19799.570288 eV Total energy + Delta-G solvation = -3339.674540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.50219 -38.96852 -37.51940 -34.70124 -34.26156 -32.59333 -30.87680 -30.83808 -28.73628 -25.83375 -25.34260 -23.90730 -22.38382 -21.99835 -20.34060 -19.73399 -19.62427 -17.04466 -16.90441 -16.54036 -15.83458 -15.59633 -15.35834 -14.94112 -14.83690 -14.14228 -13.92578 -13.89446 -13.27944 -13.10947 -12.88064 -12.73330 -12.44701 -12.31547 -12.11427 -11.65206 -11.56346 -11.30724 -11.18211 -10.97881 -10.91981 -10.79573 -10.51684 -10.19752 -10.02392 -9.79205 -9.70113 -9.63396 -9.46842 -9.05512 -8.55286 -6.99239 -5.93920 -3.30872 2.65007 3.19509 3.30304 3.47002 3.49635 4.02843 4.42104 4.48272 4.52456 4.55239 4.73731 4.96461 5.01583 5.13868 5.19361 5.23177 5.30629 5.39644 5.48559 5.49257 5.53113 5.63594 5.77544 5.78015 5.90049 5.98799 6.04635 6.14148 6.15702 6.25956 6.27472 6.38112 6.47302 6.57603 6.61779 6.73008 6.89290 7.56104 7.77681 7.96106 8.30755 8.35461 8.94242 9.71877 10.07284 11.22008 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026779 B = 0.004067 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.338508 B = 6883.306613 C = 7445.812834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.260 4.260 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.122 3.878 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.123 3.877 14 H 0.091 0.909 15 N -0.721 5.721 16 C 0.513 3.487 17 O -0.536 6.536 18 C -0.164 4.164 19 C 0.129 3.871 20 O -0.551 6.551 21 C -0.162 4.162 22 C -0.135 4.135 23 C -0.128 4.128 24 C 0.145 3.855 25 H 0.263 0.737 26 H 0.075 0.925 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.396 0.604 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.392 0.608 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.193 -11.210 -0.112 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.713 3.287 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.325 5.325 10 C -0.004 4.004 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.018 3.982 14 H 0.109 0.891 15 N -0.371 5.371 16 C 0.300 3.700 17 O -0.415 6.415 18 C -0.204 4.204 19 C 0.087 3.913 20 O -0.363 6.363 21 C -0.200 4.200 22 C -0.173 4.173 23 C -0.166 4.166 24 C 0.018 3.982 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.229 0.771 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.247 0.753 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 17.489 -11.865 0.003 21.133 hybrid contribution 0.629 1.801 -0.109 1.911 sum 18.118 -10.064 -0.105 20.725 Atomic orbital electron populations 1.69841 1.05720 1.26525 1.52894 1.25262 0.95207 0.97494 0.99491 0.86951 0.79992 0.84743 0.76968 1.21598 1.23130 1.19681 1.18948 0.84783 0.94907 1.40185 0.89579 1.44286 1.08704 1.32713 1.46789 1.21401 0.97426 0.92107 0.89447 1.21997 0.97844 0.98343 0.98996 1.21676 0.98385 0.97013 0.98325 1.21731 0.90041 0.89508 0.96950 0.89095 1.46153 1.11451 1.13827 1.65658 1.20615 0.89786 0.82438 0.77205 1.90602 1.19668 1.76627 1.54560 1.22364 0.98759 0.95726 1.03563 1.21757 0.91932 0.90276 0.87304 1.86303 1.55444 1.43307 1.51293 1.23574 1.02075 0.97158 0.97155 1.22741 0.97901 0.97653 0.98977 1.23055 0.96695 0.98836 0.97971 1.21206 0.92653 0.91331 0.93022 0.92744 0.90724 0.95669 0.91378 0.92218 0.92139 0.92441 0.77067 0.88340 0.87900 0.75280 0.89823 0.90349 0.89879 0.91512 0.90646 0.89032 0.91443 0.96114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.15 13.97 55.49 0.78 -27.38 16 2 C 0.02 0.71 5.23 -17.43 -0.09 0.62 16 3 Si 0.88 22.35 24.35 -169.99 -4.14 18.21 16 4 H -0.29 -6.98 6.62 56.52 0.37 -6.60 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.73 6.63 56.52 0.37 -6.35 16 7 C -0.26 -7.43 10.04 -15.06 -0.15 -7.58 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 9 N -0.60 -14.38 2.77 -172.33 -0.48 -14.86 16 10 C 0.12 2.60 4.20 -3.72 -0.02 2.58 16 11 C -0.13 -2.22 6.08 -26.61 -0.16 -2.38 16 12 C -0.12 -1.64 5.36 -26.69 -0.14 -1.78 16 13 C 0.12 1.99 2.60 -67.81 -0.18 1.82 16 14 H 0.09 1.74 7.59 -51.93 -0.39 1.34 16 15 N -0.72 -8.89 5.08 -53.69 -0.27 -9.16 16 16 C 0.51 6.79 7.55 -10.98 -0.08 6.71 16 17 O -0.54 -9.27 13.26 -14.27 -0.19 -9.46 16 18 C -0.16 -1.56 5.34 -27.88 -0.15 -1.71 16 19 C 0.13 1.46 1.10 -89.81 -0.10 1.36 16 20 O -0.55 -7.71 13.39 -55.05 -0.74 -8.45 16 21 C -0.16 -1.85 7.17 -25.92 -0.19 -2.04 16 22 C -0.14 -1.31 8.02 -25.92 -0.21 -1.52 16 23 C -0.13 -1.15 7.47 -25.92 -0.19 -1.34 16 24 C 0.15 2.92 6.09 -3.71 -0.02 2.89 16 25 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 26 H 0.07 1.76 4.49 -51.93 -0.23 1.53 16 27 H 0.03 0.53 7.08 -51.93 -0.37 0.16 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.40 3.53 8.60 -40.82 -0.35 3.17 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 35 H 0.39 5.76 6.19 45.56 0.28 6.05 16 36 H 0.08 0.86 8.03 -51.93 -0.42 0.45 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.62 8.10 -51.93 -0.42 0.19 16 42 H 0.07 1.49 7.93 -51.93 -0.41 1.08 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -32.98 333.28 -8.27 -41.24 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.57 Total: 7.20 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.68 Total: -2.37 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.03 Total: -51.40 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.93 Total: -17.91 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.98 -8.27 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566622080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.047 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds