Wall clock time and date at job start Tue Mar 31 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99972 * 2 1 4 4 H 1.48502 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46998 * 299.99988 * 3 2 1 6 6 H 1.48497 * 109.46972 * 60.00249 * 3 2 1 7 7 C 1.37883 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99994 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99612 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46971 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47000 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46800 * 304.99608 * 11 10 9 13 13 N 1.46898 * 109.47123 * 64.99864 * 11 10 9 14 14 C 1.50700 * 109.46888 * 184.99942 * 11 10 9 15 15 O 1.21280 * 120.00141 * 260.00086 * 14 11 10 16 16 N 1.34785 * 119.99835 * 79.99929 * 14 11 10 17 17 C 1.47361 * 125.61687 * 359.97438 * 16 14 11 18 18 C 1.54803 * 104.76149 * 154.15926 * 17 16 14 19 19 C 1.54870 * 102.01519 * 36.88943 * 18 17 16 20 20 H 1.08995 * 113.71118 * 203.22221 * 19 18 17 21 21 C 1.54676 * 108.46116 * 76.51286 * 19 18 17 22 22 C 1.54837 * 102.94221 * 213.00688 * 21 19 18 23 23 C 1.54207 * 104.19309 * 38.02541 * 22 21 19 24 24 H 1.08998 * 110.04540 * 95.28272 * 23 22 21 25 25 O 1.42903 * 110.00714 * 216.62116 * 23 22 21 26 26 C 1.46897 * 125.61219 * 179.97438 * 16 14 11 27 27 H 1.09001 * 111.70518 * 305.84734 * 26 16 14 28 28 H 0.97003 * 120.00410 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47019 * 60.00193 * 9 7 2 30 30 H 1.08997 * 109.47158 * 300.00250 * 9 7 2 31 31 H 1.08997 * 109.46718 * 59.99962 * 10 9 7 32 32 H 1.08996 * 109.46802 * 300.00290 * 10 9 7 33 33 H 1.00904 * 110.99556 * 60.00142 * 13 11 10 34 34 H 1.00896 * 110.99880 * 183.95343 * 13 11 10 35 35 H 1.09008 * 110.38152 * 35.33595 * 17 16 14 36 36 H 1.09005 * 110.47584 * 273.03246 * 17 16 14 37 37 H 1.09000 * 110.91889 * 278.70949 * 18 17 16 38 38 H 1.09001 * 110.95287 * 155.08728 * 18 17 16 39 39 H 1.09001 * 110.72149 * 94.65004 * 21 19 18 40 40 H 1.08994 * 110.72455 * 331.36947 * 21 19 18 41 41 H 1.08998 * 110.48813 * 279.34036 * 22 21 19 42 42 H 1.09007 * 110.48698 * 156.69696 * 22 21 19 43 43 H 0.96698 * 113.99792 * 297.30752 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7879 -5.0073 0.8405 13 7 0.7289 -5.1182 -1.2567 14 6 2.4549 -6.1299 0.1226 15 8 2.7871 -6.7531 -0.8633 16 7 2.9574 -6.4593 1.3292 17 6 2.6410 -5.7888 2.6027 18 6 2.8850 -6.8663 3.6870 19 6 4.1205 -7.6135 3.1268 20 1 4.2250 -8.6312 3.5028 21 6 5.3744 -6.7432 3.3772 22 6 6.2686 -7.0633 2.1544 23 6 5.2755 -7.1840 0.9809 24 1 5.2068 -6.2344 0.4504 25 8 5.6992 -8.2142 0.0858 26 6 3.9107 -7.5458 1.5911 27 1 3.5514 -8.4993 1.2040 28 1 -0.4851 0.8400 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8719 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 1.3491 -5.1022 -2.0525 34 1 0.1646 -5.9545 -1.2547 35 1 1.5994 -5.4677 2.6141 36 1 3.3019 -4.9362 2.7592 37 1 2.0292 -7.5363 3.7694 38 1 3.1112 -6.4068 4.6492 39 1 5.8686 -7.0363 4.3035 40 1 5.1121 -5.6854 3.3967 41 1 6.7979 -8.0043 2.3047 42 1 6.9743 -6.2521 1.9749 43 1 6.5546 -8.0448 -0.3321 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580048174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:00 Heat of formation + Delta-G solvation = -97.571380 kcal Electronic energy + Delta-G solvation = -23379.557871 eV Core-core repulsion = 20037.659649 eV Total energy + Delta-G solvation = -3341.898222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89726 -38.66694 -36.52918 -35.17123 -33.79470 -32.78904 -31.22150 -30.09542 -28.49275 -26.61684 -25.97671 -23.86114 -22.55346 -21.26802 -20.49262 -19.86323 -18.79432 -17.88320 -16.88292 -16.26565 -15.64701 -15.55431 -15.46081 -14.98104 -14.65499 -14.39815 -14.29089 -13.69242 -13.59316 -13.14136 -12.65593 -12.37881 -12.35444 -12.14906 -11.95948 -11.90074 -11.51842 -11.32535 -10.98533 -10.92082 -10.86447 -10.77423 -10.63954 -10.51248 -10.10725 -9.97772 -9.78215 -9.36851 -8.99210 -8.63230 -8.34846 -8.19900 -5.94662 -3.96764 2.78899 3.01060 3.32723 3.40486 3.43986 3.95457 4.16438 4.33099 4.48193 4.49466 4.77311 4.88119 4.90422 4.97555 5.05865 5.18337 5.28139 5.33935 5.34940 5.40926 5.45878 5.53170 5.61782 5.66358 5.74579 5.76990 5.84170 5.88966 5.98463 6.06830 6.36311 6.45244 6.66419 7.08087 7.40906 7.54325 7.64416 7.75519 7.81001 7.95671 8.12674 8.32657 8.47808 9.11353 9.66449 11.16276 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.004393 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.729295 B = 6372.394623 C = 6761.912296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.093 4.093 11 C 0.082 3.918 12 H 0.097 0.903 13 N -0.807 5.807 14 C 0.495 3.505 15 O -0.543 6.543 16 N -0.611 5.611 17 C 0.096 3.904 18 C -0.128 4.128 19 C -0.098 4.098 20 H 0.101 0.899 21 C -0.118 4.118 22 C -0.157 4.157 23 C 0.095 3.905 24 H 0.062 0.938 25 O -0.560 6.560 26 C 0.141 3.859 27 H 0.089 0.911 28 H 0.259 0.741 29 H 0.035 0.965 30 H 0.013 0.987 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.347 0.653 34 H 0.334 0.666 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.290 -16.126 8.875 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.132 4.132 11 C -0.034 4.034 12 H 0.114 0.886 13 N -0.334 5.334 14 C 0.283 3.717 15 O -0.420 6.420 16 N -0.346 5.346 17 C -0.026 4.026 18 C -0.166 4.166 19 C -0.117 4.117 20 H 0.119 0.881 21 C -0.156 4.156 22 C -0.195 4.195 23 C 0.035 3.965 24 H 0.080 0.920 25 O -0.364 6.364 26 C 0.037 3.963 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.334 -15.869 8.615 19.887 hybrid contribution 1.632 0.355 -0.252 1.689 sum 9.966 -15.514 8.363 20.247 Atomic orbital electron populations 1.69980 1.05946 1.26300 1.50919 1.24983 0.94781 0.99015 0.95484 0.86611 0.80090 0.84162 0.77556 1.19899 1.21041 1.21088 1.21305 0.92880 0.91303 1.50472 0.93011 1.19013 0.93535 0.89795 0.98184 1.21632 0.98856 0.92170 1.00518 1.21831 0.93428 0.93180 0.94930 0.88550 1.59034 1.26866 1.44244 1.03290 1.22570 0.82087 0.85822 0.81180 1.90686 1.60990 1.54151 1.36173 1.48650 1.45003 1.33342 1.07627 1.22426 1.02239 0.95605 0.82372 1.22783 0.97789 0.97621 0.98447 1.22941 0.95552 1.00063 0.93162 0.88053 1.22520 0.94948 1.00284 0.97827 1.23116 0.98363 1.02286 0.95777 1.22819 0.93440 0.90817 0.89431 0.92030 1.86533 1.41543 1.46253 1.62101 1.21858 0.88087 0.91880 0.94522 0.89328 0.93147 0.94675 0.96899 0.92941 0.93009 0.83849 0.85454 0.89661 0.90591 0.90556 0.89391 0.90874 0.90467 0.90500 0.91173 0.77830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 10 C -0.09 -1.91 4.77 -26.73 -0.13 -2.04 16 11 C 0.08 1.43 2.56 -68.86 -0.18 1.25 16 12 H 0.10 1.59 6.88 -51.93 -0.36 1.24 16 13 N -0.81 -14.15 8.44 -5.65 -0.05 -14.19 16 14 C 0.50 8.41 6.72 -10.98 -0.07 8.34 16 15 O -0.54 -10.81 16.39 5.56 0.09 -10.72 16 16 N -0.61 -8.48 2.88 -162.25 -0.47 -8.95 16 17 C 0.10 1.08 5.80 -2.62 -0.02 1.06 16 18 C -0.13 -1.06 6.42 -24.80 -0.16 -1.22 16 19 C -0.10 -0.87 4.06 -87.62 -0.36 -1.23 16 20 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.12 -0.98 6.11 -24.88 -0.15 -1.13 16 22 C -0.16 -1.45 6.55 -25.13 -0.16 -1.62 16 23 C 0.10 1.19 3.72 -25.68 -0.10 1.10 16 24 H 0.06 0.93 7.68 -51.93 -0.40 0.53 16 25 O -0.56 -7.31 13.24 -35.23 -0.47 -7.77 16 26 C 0.14 1.78 3.34 -66.16 -0.22 1.56 16 27 H 0.09 1.29 7.99 -51.93 -0.41 0.87 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 1.01 7.46 -51.93 -0.39 0.62 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.35 6.20 8.58 -39.29 -0.34 5.87 16 34 H 0.33 5.14 9.06 -39.29 -0.36 4.78 16 35 H 0.09 0.95 6.86 -51.92 -0.36 0.59 16 36 H 0.08 0.86 7.03 -51.93 -0.36 0.49 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.69 6.68 -51.93 -0.35 0.34 16 41 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 42 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 43 H 0.38 3.31 9.11 45.56 0.42 3.73 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -33.91 340.70 -8.35 -42.26 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.22 Total: 10.36 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.09 Total: -6.66 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.22 Total: -49.21 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.38 Total: -18.49 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.91 -8.35 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580048174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.312 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds