Wall clock time and date at job start Tue Mar 31 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47555 * 270.00498 * 3 2 1 5 5 H 1.48503 * 109.46814 * 30.00387 * 3 2 1 6 6 H 1.48496 * 109.47318 * 149.99879 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47340 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47055 * 54.99253 * 11 10 9 13 13 N 1.46910 * 109.46676 * 294.99711 * 11 10 9 14 14 C 1.50702 * 109.47372 * 175.00159 * 11 10 9 15 15 O 1.21273 * 120.00210 * 99.99744 * 14 11 10 16 16 N 1.34777 * 119.99532 * 279.99611 * 14 11 10 17 17 C 1.47365 * 125.61784 * 359.69287 * 16 14 11 18 18 C 1.55037 * 104.64899 * 154.10745 * 17 16 14 19 19 C 1.54879 * 101.91915 * 37.17105 * 18 17 16 20 20 H 1.09003 * 113.70996 * 203.06145 * 19 18 17 21 21 C 1.54681 * 108.46247 * 76.35003 * 19 18 17 22 22 C 1.54833 * 102.94178 * 213.00981 * 21 19 18 23 23 C 1.54205 * 104.19466 * 38.02129 * 22 21 19 24 24 H 1.08999 * 110.04613 * 95.28378 * 23 22 21 25 25 O 1.42905 * 110.00620 * 216.62476 * 23 22 21 26 26 C 1.46896 * 125.61605 * 180.02562 * 16 14 11 27 27 H 1.09009 * 110.92642 * 306.32596 * 26 16 14 28 28 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 30 30 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 31 31 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 32 32 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 33 33 H 1.00896 * 110.99875 * 176.04388 * 13 11 10 34 34 H 1.00892 * 111.00008 * 300.00000 * 13 11 10 35 35 H 1.09002 * 110.38325 * 273.01461 * 17 16 14 36 36 H 1.08995 * 110.38278 * 35.37143 * 17 16 14 37 37 H 1.09003 * 111.10432 * 278.96132 * 18 17 16 38 38 H 1.08995 * 110.85858 * 155.26936 * 18 17 16 39 39 H 1.08997 * 110.71861 * 94.64500 * 21 19 18 40 40 H 1.09001 * 110.71810 * 331.37430 * 21 19 18 41 41 H 1.09009 * 110.48615 * 279.34252 * 22 21 19 42 42 H 1.09001 * 110.48865 * 156.70363 * 22 21 19 43 43 H 0.96702 * 113.99449 * 297.30827 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7884 -5.0067 -0.8431 13 7 0.7282 -5.1188 1.2539 14 6 2.4550 -6.1298 -0.1250 15 8 2.7864 -6.7536 0.8608 16 7 2.9582 -6.4586 -1.3313 17 6 2.6373 -5.7917 -2.6057 18 6 3.8784 -6.0394 -3.5012 19 6 4.2809 -7.4799 -3.0988 20 1 5.3269 -7.7141 -3.2964 21 6 3.3006 -8.4687 -3.7726 22 6 3.2002 -9.6164 -2.7382 23 6 3.2153 -8.8982 -1.3737 24 1 2.1953 -8.7401 -1.0234 25 8 3.9444 -9.6743 -0.4208 26 6 3.9115 -7.5450 -1.5933 27 1 4.7917 -7.4525 -0.9569 28 1 -0.4849 0.8400 0.0004 29 1 0.6248 -2.5571 0.8897 30 1 0.6240 -2.5567 -0.8903 31 1 2.8719 -3.6043 -0.8906 32 1 2.8720 -3.6043 0.8894 33 1 0.1638 -5.9552 1.2511 34 1 1.3478 -5.1033 2.0500 35 1 1.7485 -6.2363 -3.0535 36 1 2.4902 -4.7233 -2.4485 37 1 4.6762 -5.3335 -3.2702 38 1 3.6114 -5.9904 -4.5567 39 1 3.7082 -8.8336 -4.7153 40 1 2.3276 -8.0022 -3.9268 41 1 4.0561 -10.2856 -2.8266 42 1 2.2688 -10.1675 -2.8690 43 1 3.5552 -10.5406 -0.2388 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580048175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:03 Heat of formation + Delta-G solvation = -97.133297 kcal Electronic energy + Delta-G solvation = -23272.851834 eV Core-core repulsion = 19930.972608 eV Total energy + Delta-G solvation = -3341.879225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.91201 -38.68448 -36.56865 -35.18008 -33.82165 -32.78066 -31.21273 -30.10293 -28.50812 -26.63347 -25.98579 -23.85239 -22.55584 -21.34032 -20.46752 -19.80977 -18.90216 -17.84390 -16.92035 -16.24886 -15.76660 -15.61133 -15.40384 -14.80367 -14.78398 -14.44626 -14.30061 -13.82375 -13.46152 -13.14718 -12.71778 -12.37622 -12.32976 -12.22894 -11.90448 -11.84264 -11.54927 -11.37507 -11.00320 -10.90702 -10.89295 -10.77176 -10.62755 -10.53029 -10.14701 -9.99722 -9.77274 -9.35700 -8.99337 -8.63089 -8.34403 -8.19420 -5.93489 -3.95595 2.79261 2.99280 3.34720 3.41435 3.45113 3.92788 4.15059 4.31372 4.45318 4.50499 4.73806 4.87787 4.90670 4.93872 5.05293 5.15506 5.23348 5.30101 5.30747 5.42122 5.46610 5.54589 5.56099 5.64166 5.71350 5.75902 5.83691 5.90115 5.95918 6.03677 6.34001 6.48706 6.68185 7.09248 7.40214 7.49758 7.63538 7.76247 7.80467 7.96479 8.13498 8.32472 8.48934 9.12331 9.67604 11.17410 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025555 B = 0.004023 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.415102 B = 6958.393077 C = 7550.412600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.082 3.918 12 H 0.096 0.904 13 N -0.806 5.806 14 C 0.496 3.504 15 O -0.543 6.543 16 N -0.611 5.611 17 C 0.092 3.908 18 C -0.128 4.128 19 C -0.098 4.098 20 H 0.102 0.898 21 C -0.117 4.117 22 C -0.158 4.158 23 C 0.097 3.903 24 H 0.058 0.942 25 O -0.558 6.558 26 C 0.140 3.860 27 H 0.090 0.910 28 H 0.259 0.741 29 H 0.035 0.965 30 H 0.013 0.987 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.333 0.667 34 H 0.348 0.652 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.453 -19.298 -9.599 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.134 4.134 11 C -0.033 4.033 12 H 0.114 0.886 13 N -0.334 5.334 14 C 0.284 3.716 15 O -0.420 6.420 16 N -0.347 5.347 17 C -0.031 4.031 18 C -0.166 4.166 19 C -0.117 4.117 20 H 0.120 0.880 21 C -0.155 4.155 22 C -0.196 4.196 23 C 0.036 3.964 24 H 0.076 0.924 25 O -0.362 6.362 26 C 0.035 3.965 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.162 0.838 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.447 -18.245 -9.152 21.126 hybrid contribution 0.607 -0.522 0.049 0.802 sum 6.054 -18.766 -9.103 21.718 Atomic orbital electron populations 1.69973 1.05950 1.26402 1.50865 1.24983 0.94789 0.99022 0.95470 0.86656 0.79920 0.83795 0.77981 1.20776 1.21263 1.19975 1.21277 0.92891 0.91303 1.50565 0.93001 1.19013 0.93517 0.89792 0.98176 1.21674 0.98877 0.92130 1.00676 1.21817 0.93381 0.93218 0.94914 0.88631 1.59028 1.26892 1.44162 1.03324 1.22571 0.82204 0.85734 0.81128 1.90683 1.60844 1.54244 1.36211 1.48657 1.45278 1.33271 1.07480 1.22531 0.97572 0.99459 0.83528 1.22811 0.97897 0.95904 0.99952 1.22932 1.00206 0.95771 0.92762 0.87977 1.22511 0.99635 0.95402 0.97931 1.23122 1.02410 0.98520 0.95500 1.22792 0.94929 0.91115 0.87516 0.92416 1.86570 1.54215 1.32387 1.63077 1.21891 0.92775 0.85460 0.96326 0.89194 0.93108 0.94680 0.96914 0.92786 0.92852 0.85559 0.83798 0.91283 0.88787 0.90154 0.89472 0.90852 0.90692 0.90407 0.91345 0.77931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 10 C -0.10 -1.96 4.63 -26.73 -0.12 -2.09 16 11 C 0.08 1.44 2.41 -68.86 -0.17 1.27 16 12 H 0.10 1.58 7.65 -51.93 -0.40 1.18 16 13 N -0.81 -14.10 8.44 -5.65 -0.05 -14.15 16 14 C 0.50 8.42 6.72 -10.98 -0.07 8.35 16 15 O -0.54 -10.81 16.39 5.56 0.09 -10.72 16 16 N -0.61 -8.51 2.88 -162.13 -0.47 -8.98 16 17 C 0.09 1.03 5.99 -2.49 -0.01 1.02 16 18 C -0.13 -1.14 6.44 -24.66 -0.16 -1.30 16 19 C -0.10 -0.88 4.06 -87.61 -0.36 -1.23 16 20 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.12 -0.88 6.11 -24.88 -0.15 -1.04 16 22 C -0.16 -1.30 6.55 -25.13 -0.16 -1.46 16 23 C 0.10 1.13 3.71 -25.71 -0.10 1.03 16 24 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 25 O -0.56 -6.96 13.24 -35.23 -0.47 -7.43 16 26 C 0.14 1.77 3.34 -66.19 -0.22 1.55 16 27 H 0.09 1.37 7.99 -51.92 -0.41 0.95 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 1.05 6.64 -51.93 -0.34 0.70 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.33 5.07 9.06 -39.29 -0.36 4.72 16 34 H 0.35 6.21 8.58 -39.30 -0.34 5.88 16 35 H 0.07 0.67 7.20 -51.93 -0.37 0.30 16 36 H 0.09 1.18 6.01 -51.93 -0.31 0.87 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.60 8.06 -51.93 -0.42 0.18 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.57 6.66 -51.93 -0.35 0.22 16 41 H 0.08 0.60 8.08 -51.92 -0.42 0.19 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.37 2.98 9.11 45.56 0.42 3.40 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -34.02 339.85 -8.31 -42.33 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.18 Total: 9.93 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.07 Total: -6.69 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.22 Total: -49.26 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.38 Total: -18.15 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.02 -8.31 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580048175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.803 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds