Wall clock time and date at job start Tue Mar 31 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99838 * 2 1 4 4 H 1.48506 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46963 * 299.99878 * 3 2 1 6 6 H 1.48497 * 109.47100 * 60.00021 * 3 2 1 7 7 C 1.37877 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99900 * 181.95513 * 7 2 1 9 9 C 1.50697 * 119.99961 * 1.95191 * 7 2 1 10 10 C 1.52999 * 115.54990 * 84.46923 * 9 7 2 11 11 N 1.46498 * 109.47624 * 38.94783 * 10 9 7 12 12 C 1.34770 * 120.00688 * 186.04926 * 11 10 9 13 13 O 1.21278 * 119.99673 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00272 * 179.97438 * 12 11 10 15 15 C 1.52995 * 109.47030 * 186.25384 * 14 12 11 16 16 O 1.42904 * 109.50901 * 303.00417 * 15 14 12 17 17 C 1.53125 * 109.53650 * 63.09857 * 15 14 12 18 18 C 1.53112 * 109.16359 * 177.61019 * 17 15 14 19 19 C 1.53041 * 109.28216 * 302.35271 * 18 17 15 20 20 N 1.46843 * 109.52692 * 59.17353 * 19 18 17 21 21 C 1.46853 * 111.19586 * 298.26631 * 20 19 18 22 22 C 1.53003 * 117.51929 * 230.16424 * 9 7 2 23 23 C 1.53002 * 117.49914 * 298.79745 * 9 7 2 24 24 H 0.96993 * 119.99912 * 5.01582 * 1 2 3 25 25 H 1.09000 * 109.46901 * 278.94833 * 10 9 7 26 26 H 1.08997 * 109.47539 * 158.95412 * 10 9 7 27 27 H 0.97003 * 119.99583 * 6.05206 * 11 10 9 28 28 H 1.08997 * 109.46775 * 66.25575 * 14 12 11 29 29 H 1.08994 * 109.46697 * 306.25691 * 14 12 11 30 30 H 0.96701 * 113.99419 * 299.92266 * 16 15 14 31 31 H 1.08996 * 109.52096 * 297.52315 * 17 15 14 32 32 H 1.09002 * 109.51891 * 57.64756 * 17 15 14 33 33 H 1.09003 * 109.50181 * 62.28762 * 18 17 15 34 34 H 1.09003 * 109.50595 * 182.36769 * 18 17 15 35 35 H 1.09001 * 109.45679 * 299.15962 * 19 18 17 36 36 H 1.08996 * 109.46210 * 179.19271 * 19 18 17 37 37 H 1.00894 * 111.00593 * 174.16202 * 20 19 18 38 38 H 1.09008 * 109.45522 * 181.75711 * 21 20 19 39 39 H 1.08996 * 109.46068 * 301.72836 * 21 20 19 40 40 H 1.08997 * 117.50224 * 214.96630 * 22 9 7 41 41 H 1.09000 * 117.49895 * 359.97438 * 22 9 7 42 42 H 1.08996 * 117.49924 * 359.97438 * 23 9 7 43 43 H 1.08997 * 117.49937 * 145.00013 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0842 -1.1942 0.0314 9 6 1.2518 -2.4987 -0.0456 10 6 0.8475 -2.9795 -1.4407 11 7 1.9281 -2.6943 -2.3878 12 6 1.7476 -2.9197 -3.7042 13 8 0.6903 -3.3584 -4.1048 14 6 2.8591 -2.6257 -4.6785 15 6 2.3486 -2.8183 -6.1078 16 8 1.8447 -4.1470 -6.2596 17 6 1.2301 -1.8120 -6.3920 18 6 0.7666 -1.9719 -7.8425 19 6 1.9596 -1.7692 -8.7795 20 7 3.0015 -2.7560 -8.4680 21 6 3.4956 -2.5910 -7.0950 22 6 1.6205 -3.5637 0.9893 23 6 0.2978 -2.8042 1.1109 24 1 -0.4850 0.8368 -0.0734 25 1 -0.0579 -2.4606 -1.7555 26 1 0.6607 -4.0530 -1.4151 27 1 2.7737 -2.3431 -2.0674 28 1 3.6917 -3.3049 -4.4954 29 1 3.1940 -1.5968 -4.5478 30 1 2.5017 -4.8377 -6.0972 31 1 0.3929 -1.9983 -5.7194 32 1 1.6032 -0.7995 -6.2375 33 1 0.3574 -2.9721 -7.9856 34 1 -0.0006 -1.2298 -8.0634 35 1 2.3596 -0.7641 -8.6458 36 1 1.6358 -1.8967 -9.8124 37 1 3.7583 -2.7050 -9.1333 38 1 4.2876 -3.3154 -6.9047 39 1 3.8883 -1.5821 -6.9692 40 1 1.5749 -4.6068 0.6762 41 1 2.4080 -3.3209 1.7026 42 1 0.2150 -2.0617 1.9046 43 1 -0.6178 -3.3477 0.8779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580048185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:18 Heat of formation + Delta-G solvation = -69.636558 kcal Electronic energy + Delta-G solvation = -23210.840255 eV Core-core repulsion = 19870.153378 eV Total energy + Delta-G solvation = -3340.686877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.92833 -38.24996 -36.61542 -35.24936 -33.12362 -32.02900 -31.94174 -31.28423 -27.86889 -25.84991 -24.96484 -23.89380 -21.96208 -21.13786 -19.67175 -19.62899 -19.21243 -16.83345 -16.70677 -16.00249 -15.75651 -15.23514 -14.85101 -14.60422 -14.48488 -14.28269 -13.72769 -13.63428 -13.44468 -12.86421 -12.77084 -12.59765 -12.29457 -12.16729 -11.63786 -11.61596 -11.35847 -11.05140 -10.93978 -10.87291 -10.60808 -10.55166 -10.23079 -10.16427 -9.74798 -9.56847 -9.11250 -8.91578 -8.52093 -8.50120 -8.28663 -7.87780 -6.12495 -4.22262 3.19614 3.29339 3.30038 3.37769 3.81740 4.17734 4.30620 4.58317 4.74619 4.79609 4.98027 5.12062 5.15739 5.22361 5.31141 5.40805 5.46608 5.49699 5.64872 5.67535 5.76631 5.97731 5.98692 6.06728 6.11717 6.31681 6.50227 6.53535 6.56924 6.57916 6.72691 6.87265 6.94060 7.11044 7.23463 7.31486 7.41892 7.55795 7.75681 8.02678 8.31072 8.48422 8.80237 9.08762 9.45422 10.95657 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019976 B = 0.004643 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.335560 B = 6029.245751 C = 6743.473807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.076 3.924 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.166 3.834 11 N -0.700 5.700 12 C 0.503 3.497 13 O -0.536 6.536 14 C -0.173 4.173 15 C 0.161 3.839 16 O -0.521 6.521 17 C -0.115 4.115 18 C -0.112 4.112 19 C 0.058 3.942 20 N -0.679 5.679 21 C 0.032 3.968 22 C -0.212 4.212 23 C -0.147 4.147 24 H 0.261 0.739 25 H 0.065 0.935 26 H 0.034 0.966 27 H 0.401 0.599 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.362 0.638 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.338 0.662 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.683 -3.294 -12.850 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.128 4.128 3 Si 0.713 3.287 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.024 3.976 10 C 0.042 3.958 11 N -0.350 5.350 12 C 0.287 3.713 13 O -0.414 6.414 14 C -0.214 4.214 15 C 0.119 3.881 16 O -0.324 6.324 17 C -0.152 4.152 18 C -0.150 4.150 19 C -0.071 4.071 20 N -0.310 5.310 21 C -0.098 4.098 22 C -0.250 4.250 23 C -0.185 4.185 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.237 0.763 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.207 0.793 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.156 0.844 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.733 -3.634 -13.025 14.688 hybrid contribution 2.006 1.817 0.351 2.729 sum 7.739 -1.817 -12.674 14.961 Atomic orbital electron populations 1.70000 1.05876 1.26808 1.47928 1.24974 0.94758 0.98845 0.94237 0.86643 0.80183 0.84093 0.77732 1.19663 1.20993 1.20946 1.20333 0.92247 0.88540 1.52662 0.92172 1.19065 0.98955 0.93425 0.86128 1.20810 0.89530 0.96407 0.89036 1.45973 1.18547 1.64636 1.05853 1.20187 0.88904 0.79042 0.83121 1.90679 1.27439 1.45143 1.78155 1.22431 0.98871 1.04268 0.95861 1.20742 0.92504 0.85258 0.89587 1.86722 1.39616 1.13381 1.92686 1.21677 0.99540 0.96196 0.97820 1.21490 0.96473 1.02925 0.94069 1.21966 0.93196 0.92450 0.99497 1.60102 1.15054 1.52879 1.02954 1.22645 0.97116 1.00084 0.89975 1.23088 1.00018 0.95618 1.06233 1.22468 0.91200 1.01404 1.03460 0.92914 0.91720 0.94768 0.76330 0.89151 0.88766 0.79272 0.88684 0.91963 0.90246 0.91999 0.95636 0.91053 0.84439 0.90658 0.94504 0.91678 0.90487 0.89725 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.89 12.73 55.43 0.71 -23.18 16 2 C 0.08 1.98 5.43 -17.82 -0.10 1.88 16 3 Si 0.89 20.01 29.54 -169.99 -5.02 14.98 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.50 -12.49 7.48 -34.44 -0.26 -12.75 16 8 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 9 C 0.02 0.58 1.77 -155.66 -0.27 0.31 16 10 C 0.17 3.74 5.77 -4.04 -0.02 3.72 16 11 N -0.70 -13.79 5.28 -60.30 -0.32 -14.11 16 12 C 0.50 9.36 7.34 -10.99 -0.08 9.28 16 13 O -0.54 -11.85 13.20 -15.18 -0.20 -12.05 16 14 C -0.17 -2.35 4.94 -27.88 -0.14 -2.49 16 15 C 0.16 2.17 0.57 -90.54 -0.05 2.12 16 16 O -0.52 -7.89 10.86 -55.97 -0.61 -8.49 16 17 C -0.11 -1.72 4.70 -26.61 -0.13 -1.85 16 18 C -0.11 -1.46 5.94 -26.65 -0.16 -1.62 16 19 C 0.06 0.62 6.55 -3.83 -0.03 0.60 16 20 N -0.68 -7.17 6.73 -113.82 -0.77 -7.94 16 21 C 0.03 0.34 5.49 -3.83 -0.02 0.31 16 22 C -0.21 -4.44 9.88 -26.72 -0.26 -4.71 16 23 C -0.15 -3.38 9.27 -26.72 -0.25 -3.63 16 24 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 25 H 0.06 1.66 8.12 -51.93 -0.42 1.24 16 26 H 0.03 0.75 7.94 -51.93 -0.41 0.34 16 27 H 0.40 7.43 7.54 -40.82 -0.31 7.12 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.36 4.24 9.05 45.56 0.41 4.66 16 31 H 0.09 1.77 6.08 -51.93 -0.32 1.45 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.19 7.80 -51.93 -0.40 0.79 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.34 2.79 8.90 -39.30 -0.35 2.44 16 38 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 43 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -30.29 343.98 -9.20 -39.49 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -6.41 Total: 14.94 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.76 Total: -8.82 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.38 Total: -45.23 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.81 Total: -20.54 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.29 -9.20 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580048185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.144 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds