Wall clock time and date at job start Tue Mar 31 2020 05:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99690 * 2 1 4 4 H 1.48502 * 109.47118 * 269.99681 * 3 2 1 5 5 H 1.48506 * 109.47267 * 29.99886 * 3 2 1 6 6 H 1.48503 * 109.47084 * 149.99634 * 3 2 1 7 7 C 1.37876 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00414 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47261 * 180.02562 * 9 7 2 11 11 C 1.46953 * 110.99892 * 66.17558 * 10 9 7 12 12 C 1.53060 * 109.36120 * 183.16997 * 11 10 9 13 13 N 1.46955 * 109.37848 * 301.63341 * 12 11 10 14 14 C 1.46901 * 110.99672 * 183.18145 * 13 12 11 15 15 C 1.52995 * 109.47269 * 154.68149 * 14 13 12 16 16 C 1.53004 * 115.55151 * 148.47483 * 15 14 13 17 17 C 1.50703 * 109.47040 * 291.83748 * 16 15 14 18 18 O 1.20832 * 119.99700 * 351.40734 * 17 16 15 19 19 O 1.34227 * 120.00069 * 171.41137 * 17 16 15 20 20 C 1.53001 * 117.49928 * 2.76624 * 15 14 13 21 21 C 1.52997 * 60.00048 * 252.51032 * 20 15 14 22 22 C 1.46955 * 110.88475 * 59.31217 * 13 12 11 23 23 C 1.46955 * 110.99672 * 190.00116 * 10 9 7 24 24 H 0.97003 * 120.00417 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47010 * 59.99926 * 9 7 2 26 26 H 1.09003 * 109.46740 * 300.00192 * 9 7 2 27 27 H 1.08998 * 109.47385 * 63.21221 * 11 10 9 28 28 H 1.09003 * 109.51165 * 303.14315 * 11 10 9 29 29 H 1.09003 * 109.48376 * 181.65407 * 12 11 10 30 30 H 1.08995 * 109.48550 * 61.60896 * 12 11 10 31 31 H 1.09007 * 109.46556 * 274.68165 * 14 13 12 32 32 H 1.09001 * 109.47307 * 34.67778 * 14 13 12 33 33 H 1.08995 * 109.47503 * 51.83555 * 16 15 14 34 34 H 1.08996 * 109.47124 * 171.84102 * 16 15 14 35 35 H 0.96701 * 116.99720 * 185.02064 * 19 17 16 36 36 H 1.09004 * 117.49875 * 359.97438 * 20 15 14 37 37 H 1.09004 * 117.49714 * 145.01967 * 20 15 14 38 38 H 1.09008 * 117.49852 * 252.50987 * 21 20 15 39 39 H 1.08994 * 117.50196 * 107.48943 * 21 20 15 40 40 H 1.08996 * 109.48566 * 60.64207 * 22 13 12 41 41 H 1.08997 * 109.48858 * 180.69065 * 22 13 12 42 42 H 1.09005 * 109.49047 * 56.84230 * 23 10 9 43 43 H 1.09000 * 109.48782 * 296.77214 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 2.9682 -3.6553 1.2574 12 6 4.0035 -4.7804 1.1872 13 7 3.3189 -6.0588 0.9489 14 6 4.2735 -7.1753 0.9502 15 6 3.5473 -8.4669 1.3312 16 6 4.0982 -9.7456 0.6968 17 6 3.8321 -9.7254 -0.7864 18 8 3.1284 -8.8661 -1.2623 19 8 4.3768 -10.6620 -1.5787 20 6 2.0369 -8.3863 1.5622 21 6 2.9838 -8.5683 2.7501 22 6 2.5568 -6.0189 -0.3069 23 6 1.5211 -4.8941 -0.2365 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.2884 -3.8380 2.0897 28 1 3.4763 -2.7023 1.4050 29 1 4.5503 -4.8306 2.1288 30 1 4.6998 -4.5834 0.3721 31 1 4.7084 -7.2826 -0.0436 32 1 5.0645 -6.9763 1.6733 33 1 5.1722 -9.8048 0.8725 34 1 3.6089 -10.6119 1.1419 35 1 4.2393 -10.5654 -2.5310 36 1 1.5608 -7.4131 1.4430 37 1 1.4354 -9.2444 1.2620 38 1 3.0052 -9.5461 3.2315 39 1 3.1306 -7.7149 3.4121 40 1 3.2365 -5.8358 -1.1390 41 1 2.0493 -6.9721 -0.4548 42 1 0.9742 -4.8438 -1.1780 43 1 0.8250 -5.0912 0.5788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:57 Heat of formation + Delta-G solvation = -51.281945 kcal Electronic energy + Delta-G solvation = -23095.379373 eV Core-core repulsion = 19755.488411 eV Total energy + Delta-G solvation = -3339.890962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.62136 -39.08771 -37.42306 -36.12262 -34.43323 -32.34728 -30.39821 -30.13715 -28.58450 -26.15336 -23.92285 -23.10418 -22.30108 -22.07986 -21.21951 -19.04547 -18.90069 -18.19540 -16.62998 -16.29614 -16.19529 -15.75514 -15.32514 -14.69267 -14.59658 -14.14430 -14.03238 -13.56261 -13.28579 -13.17569 -12.94987 -12.64576 -12.29992 -11.96020 -11.64746 -11.58703 -11.48962 -11.26281 -11.10124 -10.79136 -10.75718 -10.64568 -10.55009 -10.29389 -10.22534 -10.09780 -9.73006 -9.61021 -9.10669 -8.39354 -8.01889 -7.13088 -5.98356 -3.99563 2.06327 2.78183 3.34582 3.40187 3.43757 3.84005 4.09977 4.46032 4.50886 4.74036 4.81801 4.96034 5.07691 5.20648 5.22450 5.37071 5.39367 5.50055 5.57495 5.68965 5.72536 5.85320 5.93115 5.97341 5.99462 6.05658 6.12635 6.18590 6.29614 6.41869 6.51957 6.59439 6.71407 6.75966 7.30426 7.38175 7.43310 7.49600 7.74647 7.85565 8.16329 8.29260 8.62619 9.08186 9.64407 11.12567 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032255 B = 0.003547 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.879371 B = 7891.699675 C = 8064.858453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.069 3.931 12 C 0.058 3.942 13 N -0.534 5.534 14 C 0.096 3.904 15 C -0.124 4.124 16 C -0.073 4.073 17 C 0.471 3.529 18 O -0.494 6.494 19 O -0.525 6.525 20 C -0.148 4.148 21 C -0.159 4.159 22 C 0.063 3.937 23 C 0.056 3.944 24 H 0.261 0.739 25 H 0.029 0.971 26 H -0.009 1.009 27 H 0.027 0.973 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.409 0.591 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.032 0.968 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.892 -21.931 2.610 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.059 4.059 12 C -0.070 4.070 13 N -0.259 5.259 14 C -0.033 4.033 15 C -0.125 4.125 16 C -0.111 4.111 17 C 0.312 3.688 18 O -0.380 6.380 19 O -0.338 6.338 20 C -0.185 4.185 21 C -0.196 4.196 22 C -0.065 4.065 23 C -0.073 4.073 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.009 0.991 27 H 0.046 0.954 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.267 0.733 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.051 0.949 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.577 -21.586 2.901 23.408 hybrid contribution 0.296 0.960 -0.744 1.251 sum 8.873 -20.625 2.157 22.557 Atomic orbital electron populations 1.69964 1.06054 1.26688 1.51167 1.24992 0.94852 0.99270 0.95538 0.86507 0.79684 0.83178 0.78075 1.20689 1.21345 1.19889 1.21166 0.93424 0.90013 1.49828 0.91981 1.19694 0.90084 0.87368 0.96038 1.62257 1.28181 1.02827 1.33134 1.21963 0.95422 0.97296 0.91268 1.22255 0.96133 0.88889 0.99719 1.62073 1.25531 1.02734 1.35547 1.21404 0.93219 0.89199 0.99467 1.21125 0.98071 0.93618 0.99671 1.20845 1.04186 0.98960 0.87123 1.23558 0.76630 0.78005 0.90585 1.90766 1.34956 1.35888 1.76362 1.84521 1.73144 1.52025 1.24132 1.23047 0.90978 1.03963 1.00522 1.22991 1.03980 1.02488 0.90108 1.22283 0.96044 0.99084 0.89093 1.22099 0.94980 0.90089 1.00133 0.92976 0.95318 0.99129 0.95449 0.89752 0.91397 0.94599 0.94491 0.91150 0.87688 0.87613 0.73253 0.86405 0.90080 0.89455 0.88159 0.94918 0.89334 0.91324 0.95449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.54 8.47 -34.44 -0.29 -14.83 16 8 H 0.06 1.76 7.13 -52.48 -0.37 1.39 16 9 C 0.19 5.24 4.72 -4.98 -0.02 5.21 16 10 N -0.54 -12.27 4.70 -235.90 -1.11 -13.38 16 11 C 0.07 1.41 5.43 -3.76 -0.02 1.39 16 12 C 0.06 0.95 5.53 -3.76 -0.02 0.93 16 13 N -0.53 -8.13 3.44 -234.46 -0.81 -8.94 16 14 C 0.10 1.18 4.87 -3.83 -0.02 1.16 16 15 C -0.12 -1.27 1.44 -154.51 -0.22 -1.50 16 16 C -0.07 -0.58 5.67 -27.88 -0.16 -0.74 16 17 C 0.47 4.60 7.85 36.01 0.28 4.88 16 18 O -0.49 -6.54 14.09 -18.75 -0.26 -6.80 16 19 O -0.53 -3.95 13.42 -39.25 -0.53 -4.47 16 20 C -0.15 -1.70 8.09 -26.73 -0.22 -1.92 16 21 C -0.16 -1.52 9.91 -26.73 -0.26 -1.79 16 22 C 0.06 1.06 4.28 -3.76 -0.02 1.05 16 23 C 0.06 1.11 5.61 -3.76 -0.02 1.09 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 26 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.82 6.79 -51.93 -0.35 1.47 16 29 H 0.07 0.97 7.98 -51.93 -0.41 0.55 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.49 6.97 -51.93 -0.36 0.13 16 32 H 0.07 0.79 7.75 -51.93 -0.40 0.38 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.11 0.65 8.07 -51.93 -0.42 0.23 16 35 H 0.41 1.64 9.10 45.56 0.41 2.06 16 36 H 0.12 1.68 5.86 -51.93 -0.30 1.37 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.03 0.61 8.12 -51.93 -0.42 0.18 16 41 H 0.09 1.45 4.81 -51.93 -0.25 1.20 16 42 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -32.77 339.25 -9.21 -41.98 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.24 Total: -0.37 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.09 Total: -3.58 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -1.18 Total: -48.84 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.79 Total: -11.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.77 -9.21 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.306 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds